Wall clock time and date at job start Tue Mar 31 2020 17:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.88732 * 2 1 4 4 C 1.55126 * 110.90497 * 124.09057 * 2 1 3 5 5 N 1.47423 * 104.72422 * 155.27305 * 4 2 1 6 6 C 1.34777 * 125.65106 * 155.81451 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.72686 * 6 5 4 8 8 C 1.50703 * 120.00161 * 179.71993 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 S 1.81408 * 109.46799 * 180.02562 * 9 8 6 11 11 O 1.42102 * 110.54035 * 291.62208 * 10 9 8 12 12 O 1.42098 * 110.54418 * 68.37375 * 10 9 8 13 13 N 1.65603 * 104.44779 * 180.02562 * 10 9 8 14 14 C 1.46496 * 120.00314 * 89.99701 * 13 10 9 15 15 C 1.46501 * 119.99767 * 269.99924 * 13 10 9 16 16 C 1.47025 * 108.70465 * 335.55925 * 5 4 2 17 17 C 1.54327 * 107.27046 * 1.28114 * 16 5 4 18 18 H 1.08993 * 110.72304 * 140.55572 * 17 16 5 19 19 N 1.46504 * 110.71944 * 263.65647 * 17 16 5 20 20 C 1.36931 * 119.99987 * 273.54299 * 19 17 16 21 21 H 1.07997 * 120.00051 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99885 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00181 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46992 * 90.00109 * 24 22 20 26 26 H 1.48497 * 109.47101 * 210.00173 * 24 22 20 27 27 H 1.48498 * 109.47164 * 330.00088 * 24 22 20 28 28 H 1.08996 * 109.46799 * 183.87828 * 1 2 3 29 29 H 1.08990 * 109.47128 * 303.88439 * 1 2 3 30 30 H 1.09002 * 109.46644 * 63.88256 * 1 2 3 31 31 H 1.09001 * 110.49878 * 36.43760 * 4 2 1 32 32 H 1.08995 * 110.34630 * 274.03849 * 4 2 1 33 33 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 34 34 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 35 35 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 36 36 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 37 37 H 1.08996 * 109.47226 * 60.00005 * 14 13 10 38 38 H 1.08994 * 109.46997 * 180.02562 * 14 13 10 39 39 H 1.08999 * 109.46914 * 300.00022 * 14 13 10 40 40 H 1.09000 * 109.47620 * 89.99811 * 15 13 10 41 41 H 1.08999 * 109.47127 * 210.00391 * 15 13 10 42 42 H 1.09004 * 109.47215 * 329.99805 * 15 13 10 43 43 H 1.08997 * 109.88721 * 120.69687 * 16 5 4 44 44 H 1.09002 * 109.88145 * 241.71341 * 16 5 4 45 45 H 0.97000 * 120.00021 * 93.54728 * 19 17 16 46 46 H 0.97001 * 119.99689 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0835 -0.8123 1.2001 5 7 3.4271 -1.2434 0.7730 6 6 4.4476 -1.5621 1.5936 7 8 4.3008 -1.5010 2.7959 8 6 5.7712 -1.9947 1.0172 9 6 6.7486 -2.2965 2.1549 10 16 8.3421 -2.8165 1.4610 11 8 8.2213 -4.0841 0.8301 12 8 8.9787 -1.7290 0.8043 13 7 9.2935 -3.1087 2.7846 14 6 9.3257 -4.4456 3.3828 15 6 10.1029 -2.0303 3.3573 16 6 3.4675 -1.2739 -0.6964 17 6 2.0862 -0.8075 -1.2025 18 1 2.1922 -0.1693 -2.0796 19 7 1.2283 -1.9570 -1.5009 20 6 1.2848 -2.5520 -2.7328 21 1 1.9615 -2.1737 -3.4847 22 6 0.4716 -3.6409 -3.0157 23 7 -0.3541 -4.1010 -2.0999 24 14 0.5482 -4.4521 -4.6966 25 1 1.5665 -5.5329 -4.6787 26 1 -0.7794 -5.0284 -5.0291 27 1 0.9184 -3.4401 -5.7183 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5729 0.8531 30 1 -0.3633 0.4524 -0.9228 31 1 1.4524 -1.6786 1.3982 32 1 2.1515 -0.1809 2.0859 33 1 6.1741 -1.1966 0.3936 34 1 5.6289 -2.8909 0.4133 35 1 6.8909 -1.4005 2.7590 36 1 6.3455 -3.0947 2.7781 37 1 9.6749 -5.1662 2.6433 38 1 10.0021 -4.4449 4.2375 39 1 8.3239 -4.7202 3.7128 40 1 9.5237 -1.5052 4.1169 41 1 11.0002 -2.4511 3.8110 42 1 10.3871 -1.3319 2.5700 43 1 4.2426 -0.5994 -1.0600 44 1 3.6678 -2.2885 -1.0407 45 1 0.6203 -2.2966 -0.8257 46 1 -0.9221 -4.8621 -2.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755120867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:02 Heat of formation + Delta-G solvation = -110.989756 kcal Electronic energy + Delta-G solvation = -27389.811515 eV Core-core repulsion = 23441.300334 eV Total energy + Delta-G solvation = -3948.511181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23118 -39.14615 -38.32336 -37.27089 -36.91033 -35.71043 -34.46115 -33.69871 -32.20852 -29.33915 -28.93342 -28.10507 -25.97810 -25.74351 -25.13349 -23.36612 -20.73333 -20.26518 -19.95746 -19.43376 -18.78639 -18.15592 -17.63768 -17.25655 -17.08657 -16.75230 -16.31582 -15.98367 -15.63420 -15.41799 -15.26303 -14.95183 -14.60779 -14.48564 -14.11595 -13.98737 -13.70372 -13.62662 -13.44477 -13.35945 -13.26737 -13.23350 -13.05561 -12.88508 -12.78064 -12.58329 -12.56059 -12.52661 -12.32753 -12.12642 -11.99424 -11.97405 -11.46106 -11.37200 -11.09871 -10.90736 -10.00418 -9.68330 -9.00709 -7.91957 -5.19935 -0.88000 1.48890 1.50534 1.51479 1.57711 1.58934 1.98182 2.58212 2.72950 3.07865 3.25455 3.40073 3.41521 3.71065 3.76359 3.87812 3.89203 3.93461 4.09119 4.24234 4.37355 4.42674 4.53940 4.56147 4.61571 4.64253 4.71941 4.72161 4.79286 4.87623 4.97065 4.97560 5.00750 5.01001 5.03483 5.19816 5.24371 5.33592 5.54843 5.55975 5.60370 6.29841 6.49377 7.02063 7.37593 8.12053 8.34289 9.31282 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002954 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.342039 B = 9476.055583 C =10773.486166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.530 3.470 7 O -0.580 6.580 8 C -0.138 4.138 9 C -0.601 4.601 10 S 2.630 3.370 11 O -0.984 6.984 12 O -0.977 6.977 13 N -1.008 6.008 14 C 0.079 3.921 15 C 0.072 3.928 16 C 0.071 3.929 17 C 0.161 3.839 18 H 0.083 0.917 19 N -0.724 5.724 20 C -0.234 4.234 21 H 0.083 0.917 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.966 3.034 25 H -0.293 1.293 26 H -0.302 1.302 27 H -0.266 1.266 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.375 0.625 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.660 7.877 12.119 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.131 0.869 4 C -0.009 4.009 5 N -0.341 5.341 6 C 0.319 3.681 7 O -0.461 6.461 8 C -0.179 4.179 9 C -0.730 4.730 10 S 2.724 3.276 11 O -0.975 6.975 12 O -0.967 6.967 13 N -0.848 5.848 14 C -0.066 4.066 15 C -0.073 4.073 16 C -0.054 4.054 17 C 0.051 3.949 18 H 0.101 0.899 19 N -0.364 5.364 20 C -0.366 4.366 21 H 0.101 0.899 22 C -0.266 4.266 23 N -0.620 5.620 24 Si 0.796 3.204 25 H -0.220 1.220 26 H -0.229 1.229 27 H -0.191 1.191 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.209 0.791 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.988 7.752 11.717 23.620 hybrid contribution -1.061 -1.062 -0.084 1.503 sum 17.927 6.690 11.633 22.393 Atomic orbital electron populations 1.21475 0.93566 1.01299 1.02016 1.22629 0.96712 0.99355 0.93117 0.86947 1.22305 0.82491 0.97793 0.98303 1.48545 1.12028 1.65402 1.08096 1.20297 0.85394 0.76619 0.85818 1.90640 1.84004 1.55752 1.15696 1.21452 0.92447 1.05747 0.98229 1.30374 1.18643 1.14542 1.09472 1.04344 0.76141 0.73295 0.73867 1.93565 1.87244 1.42553 1.74093 1.93546 1.73311 1.56987 1.72855 1.57158 1.58624 1.18310 1.50708 1.21779 1.03898 0.81061 0.99841 1.21903 0.96413 0.89235 0.99724 1.23231 1.01777 1.02138 0.78291 1.21489 0.88297 0.88776 0.96382 0.89872 1.42622 1.46168 1.34055 1.13540 1.19641 1.16961 1.08507 0.91482 0.89876 1.25474 0.99702 1.00381 1.01029 1.69809 1.28870 1.28155 1.35133 0.85244 0.75986 0.78565 0.80580 1.22022 1.22882 1.19081 0.94456 0.91013 0.92369 0.93643 0.90186 0.85140 0.86984 0.82964 0.84003 0.92306 0.87412 0.91418 0.90890 0.88479 0.90628 0.88680 0.92334 0.79124 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.85 71.98 0.64 -3.06 16 2 C -0.10 -2.77 3.53 -9.32 -0.03 -2.80 16 3 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.11 3.54 6.36 86.93 0.55 4.09 16 5 N -0.61 -19.01 3.32 -811.36 -2.70 -21.71 16 6 C 0.53 16.33 7.85 87.66 0.69 17.02 16 7 O -0.58 -20.79 16.24 -3.02 -0.05 -20.84 16 8 C -0.14 -3.23 4.90 29.85 0.15 -3.08 16 9 C -0.60 -11.50 5.47 71.98 0.39 -11.11 16 10 S 2.63 53.59 5.43 -56.49 -0.31 53.28 16 11 O -0.98 -27.13 17.10 -127.65 -2.18 -29.31 16 12 O -0.98 -24.31 16.58 -127.65 -2.12 -26.42 16 13 N -1.01 -14.88 3.52 -562.71 -1.98 -16.86 16 14 C 0.08 0.93 10.25 127.77 1.31 2.24 16 15 C 0.07 0.73 10.61 127.77 1.36 2.09 16 16 C 0.07 2.17 6.22 86.73 0.54 2.71 16 17 C 0.16 5.43 3.36 46.18 0.16 5.59 16 18 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 19 N -0.72 -32.91 4.62 -317.32 -1.47 -34.37 16 20 C -0.23 -11.96 9.98 84.03 0.84 -11.12 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 23 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 24 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H 0.04 1.34 6.39 -2.39 -0.02 1.33 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.64 7.99 -2.39 -0.02 1.62 16 32 H 0.08 2.32 8.03 -2.39 -0.02 2.31 16 33 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.15 2.47 8.10 -2.39 -0.02 2.45 16 36 H 0.14 2.64 8.10 -2.39 -0.02 2.62 16 37 H 0.06 0.82 7.90 -2.39 -0.02 0.80 16 38 H 0.11 0.64 7.79 -2.39 -0.02 0.62 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 0.58 7.92 -2.39 -0.02 0.56 16 42 H 0.08 0.93 6.91 -2.39 -0.02 0.92 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 45 H 0.38 18.85 6.11 -92.71 -0.57 18.29 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -75.92 386.30 -1.04 -76.96 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.40 Total: 30.81 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 7.05 Total: -1.03 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -5.86 Total: -130.27 kcal Atomic # 8 Polarization: -72.23 SS G_CDS: -4.35 Total: -76.58 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 53.59 SS G_CDS: -0.31 Total: 53.28 kcal Total: -75.92 -1.04 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755120867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.033 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds