Wall clock time and date at job start Tue Mar 31 2020 19:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.46994 * 2 1 4 4 C 1.34842 * 117.00119 * 180.02562 * 3 2 1 5 5 O 1.21595 * 119.99414 * 359.97438 * 4 3 2 6 6 C 1.46723 * 120.00153 * 179.97438 * 4 3 2 7 7 C 1.41475 * 126.51951 * 359.68522 * 6 4 3 8 8 N 1.30308 * 108.17871 * 180.26441 * 7 6 4 9 9 N 1.39896 * 109.21894 * 359.97438 * 8 7 6 10 10 C 1.46500 * 125.74364 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.46974 * 265.27788 * 10 9 8 12 12 H 1.07995 * 120.00136 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99716 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00042 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99899 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46994 * 59.99873 * 15 13 11 17 17 H 1.48501 * 109.47062 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46749 * 300.00081 * 15 13 11 19 19 C 1.34795 * 108.51381 * 0.02562 * 9 8 7 20 20 N 1.38345 * 126.43983 * 179.97438 * 19 9 8 21 21 C 1.34769 * 120.00605 * 271.57025 * 20 19 9 22 22 O 1.21619 * 119.99738 * 5.01992 * 21 20 19 23 23 C 1.47027 * 120.00377 * 185.02399 * 21 20 19 24 24 C 1.33046 * 120.00118 * 179.97438 * 23 21 20 25 25 C 1.50698 * 119.99755 * 179.97438 * 24 23 21 26 26 C 1.53008 * 117.49342 * 188.62024 * 25 24 23 27 27 C 1.53006 * 59.99989 * 252.51072 * 26 25 24 28 28 H 1.08992 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47103 * 300.01032 * 1 2 3 30 30 H 1.09008 * 109.46926 * 60.00199 * 1 2 3 31 31 H 1.08994 * 109.47373 * 239.99644 * 2 1 3 32 32 H 1.08999 * 109.46501 * 119.99349 * 2 1 3 33 33 H 1.08003 * 125.90738 * 0.22432 * 7 6 4 34 34 H 1.08996 * 109.46868 * 25.27974 * 10 9 8 35 35 H 1.09004 * 109.47133 * 145.28261 * 10 9 8 36 36 H 0.97004 * 119.99710 * 179.97438 * 14 13 11 37 37 H 0.97010 * 119.99591 * 91.56845 * 20 19 9 38 38 H 1.08000 * 120.00317 * 359.97438 * 23 21 20 39 39 H 1.08000 * 119.99565 * 359.97438 * 24 23 21 40 40 H 1.08993 * 115.55197 * 334.33053 * 25 24 23 41 41 H 1.08997 * 117.50264 * 359.97438 * 26 25 24 42 42 H 1.08995 * 117.49393 * 145.02636 * 26 25 24 43 43 H 1.09001 * 117.50013 * 252.51369 * 27 26 25 44 44 H 1.08998 * 117.51776 * 107.47955 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3508 1.5456 -0.0005 5 8 4.0914 0.5813 -0.0005 6 6 3.9115 2.9015 -0.0011 7 6 3.1827 4.1140 -0.0075 8 7 4.0344 5.1003 -0.0115 9 7 5.3351 4.5855 -0.0075 10 6 6.5685 5.3761 -0.0096 11 6 7.0562 5.5422 -1.4258 12 1 6.5027 5.1031 -2.2426 13 6 8.2086 6.2556 -1.6788 14 7 8.8824 6.7907 -0.6842 15 14 8.8129 6.4621 -3.4343 16 1 7.7758 7.1597 -4.2360 17 1 10.0632 7.2634 -3.4364 18 1 9.0805 5.1265 -4.0259 19 6 5.2627 3.2395 -0.0013 20 7 6.3299 2.3591 0.0036 21 6 6.8712 1.9496 -1.1607 22 8 6.4826 2.4227 -2.2116 23 6 7.9312 0.9307 -1.1606 24 6 8.4651 0.5261 -2.3100 25 6 9.5520 -0.5178 -2.3098 26 6 10.2651 -0.7954 -3.6348 27 6 9.2811 -1.8199 -3.0662 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.1066 4.2062 -0.0093 34 1 6.3722 6.3565 0.4244 35 1 7.3295 4.8638 0.5790 36 1 9.6934 7.2924 -0.8622 37 1 6.6888 2.0367 0.8452 38 1 8.2765 0.5108 -0.2274 39 1 8.1195 0.9457 -3.2432 40 1 10.1438 -0.5800 -1.3966 41 1 9.9478 -0.2233 -4.5066 42 1 11.3264 -1.0402 -3.5934 43 1 9.6951 -2.7387 -2.6509 44 1 8.3166 -1.9216 -3.5636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093241189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:39 Heat of formation + Delta-G solvation = -26.742017 kcal Electronic energy + Delta-G solvation = -28585.682885 eV Core-core repulsion = 24505.381008 eV Total energy + Delta-G solvation = -4080.301876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.70897 -40.95628 -40.54928 -38.46800 -37.46781 -36.10664 -35.71874 -33.71548 -33.48279 -32.52329 -30.61229 -29.34584 -26.40828 -25.45469 -24.56719 -23.33672 -23.25093 -22.54098 -21.84702 -21.10081 -20.63325 -19.19042 -18.93452 -18.53229 -18.17810 -17.44290 -17.22865 -16.83318 -16.49282 -16.16269 -15.78927 -15.61755 -15.35925 -14.98792 -14.92184 -14.66250 -14.41408 -14.20166 -13.77662 -13.63940 -13.52257 -13.11418 -12.84399 -12.82440 -12.65012 -12.53481 -12.40058 -12.35748 -12.31110 -12.13764 -11.92810 -11.48242 -11.44451 -11.38485 -11.16937 -10.80323 -10.70777 -10.51728 -10.08831 -9.80156 -8.41300 -6.53420 0.14460 0.24574 1.03752 1.22501 1.29788 1.31395 1.41783 1.79570 2.06245 2.16745 2.24136 2.33939 2.91183 3.00750 3.46916 3.62323 3.87487 3.91255 3.97773 4.04951 4.07969 4.14509 4.16348 4.21725 4.39671 4.40731 4.48206 4.68835 4.77392 4.81779 4.95029 4.98052 4.99485 5.01093 5.07945 5.19180 5.23720 5.29203 5.39117 5.44107 5.48831 5.52359 5.70385 5.89663 6.26230 6.51957 6.60354 6.84995 7.08266 7.16706 8.66735 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.007269 B = 0.004974 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.015751 B = 5628.269914 C = 8803.537394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.555 3.445 5 O -0.540 6.540 6 C -0.308 4.308 7 C 0.106 3.894 8 N -0.313 5.313 9 N -0.327 5.327 10 C 0.269 3.731 11 C -0.543 4.543 12 H 0.043 0.957 13 C 0.031 3.969 14 N -0.912 5.912 15 Si 0.958 3.042 16 H -0.275 1.275 17 H -0.264 1.264 18 H -0.278 1.278 19 C 0.375 3.625 20 N -0.646 5.646 21 C 0.558 3.442 22 O -0.565 6.565 23 C -0.211 4.211 24 C -0.027 4.027 25 C -0.149 4.149 26 C -0.171 4.171 27 C -0.153 4.153 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.234 0.766 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.274 0.726 37 H 0.430 0.570 38 H 0.166 0.834 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -18.359 2.508 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.401 3.599 5 O -0.432 6.432 6 C -0.324 4.324 7 C -0.080 4.080 8 N -0.134 5.134 9 N -0.105 5.105 10 C 0.150 3.850 11 C -0.581 4.581 12 H 0.062 0.938 13 C -0.170 4.170 14 N -0.551 5.551 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.188 1.188 18 H -0.204 1.204 19 C 0.146 3.854 20 N -0.300 5.300 21 C 0.350 3.650 22 O -0.443 6.443 23 C -0.231 4.231 24 C -0.047 4.047 25 C -0.167 4.167 26 C -0.208 4.208 27 C -0.190 4.190 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.251 0.749 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.272 0.728 38 H 0.183 0.817 39 H 0.119 0.881 40 H 0.154 0.846 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.134 -16.847 1.823 17.706 hybrid contribution 0.490 -0.350 -0.444 0.748 sum -4.644 -17.197 1.379 17.866 Atomic orbital electron populations 1.21819 0.90026 1.04414 1.03802 1.23301 0.97168 0.78936 1.02422 1.86541 1.22240 1.33815 1.84387 1.19580 0.80915 0.87596 0.71772 1.90782 1.60970 1.42571 1.48851 1.19165 0.91045 0.93050 1.29133 1.24541 1.01357 0.87191 0.94893 1.77172 0.86873 1.23856 1.25486 1.49759 1.07561 1.04182 1.49038 1.19426 0.76430 0.90958 0.98154 1.21246 1.09819 1.35175 0.91843 0.93836 1.25517 0.95806 0.94198 1.01511 1.69960 1.17651 1.34836 1.32626 0.85611 0.78141 0.78273 0.79733 1.20004 1.18847 1.20363 1.17989 0.88532 0.82312 0.96560 1.42199 1.32831 1.44195 1.10798 1.19256 0.81986 0.81589 0.82144 1.90803 1.63208 1.57668 1.32625 1.22370 0.99014 1.00059 1.01694 1.23213 0.92012 0.92125 0.97350 1.21363 0.99540 0.96782 0.99033 1.23130 0.99499 1.02806 0.95368 1.23080 1.00970 0.92756 1.02192 0.87979 0.90894 0.91498 0.92022 0.90949 0.74948 0.93864 0.93384 0.91661 0.72829 0.81650 0.88085 0.84646 0.89320 0.86200 0.85750 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.29 71.98 0.74 -1.25 16 2 C 0.06 1.18 6.20 71.98 0.45 1.63 16 3 O -0.35 -10.12 10.07 -57.54 -0.58 -10.70 16 4 C 0.55 19.66 7.94 70.04 0.56 20.22 16 5 O -0.54 -20.62 16.09 19.53 0.31 -20.31 16 6 C -0.31 -11.97 6.15 -20.01 -0.12 -12.10 16 7 C 0.11 3.82 11.86 85.72 1.02 4.84 16 8 N -0.31 -13.77 12.47 -56.22 -0.70 -14.47 16 9 N -0.33 -15.55 3.58 -347.35 -1.24 -16.79 16 10 C 0.27 14.18 6.08 85.63 0.52 14.70 16 11 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 12 H 0.04 2.76 7.65 -2.91 -0.02 2.74 16 13 C 0.03 1.76 5.46 84.65 0.46 2.22 16 14 N -0.91 -51.90 13.29 21.45 0.28 -51.62 16 15 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 16 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 C 0.37 16.14 6.48 132.59 0.86 17.00 16 20 N -0.65 -24.88 4.51 -310.69 -1.40 -26.28 16 21 C 0.56 23.15 7.71 86.55 0.67 23.82 16 22 O -0.57 -29.07 16.03 -4.09 -0.07 -29.13 16 23 C -0.21 -6.53 9.67 23.42 0.23 -6.31 16 24 C -0.03 -0.79 9.24 24.52 0.23 -0.57 16 25 C -0.15 -3.03 6.01 -11.54 -0.07 -3.10 16 26 C -0.17 -3.01 10.23 30.60 0.31 -2.70 16 27 C -0.15 -2.50 10.23 30.60 0.31 -2.19 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.23 5.94 8.06 -2.91 -0.02 5.92 16 34 H 0.04 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 37 H 0.43 13.07 8.81 -92.70 -0.82 12.25 16 38 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.10 3.47 7.49 -2.91 -0.02 3.45 16 40 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -77.09 395.88 5.24 -71.85 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.21 Total: 24.71 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 6.40 Total: 24.86 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.06 Total: -109.16 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -0.33 Total: -60.14 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.09 5.24 -71.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093241189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.107 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds