Wall clock time and date at job start Tue Mar 31 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46492 * 109.47263 * 2 1 4 4 C 1.46505 * 120.00179 * 269.99960 * 3 2 1 5 5 C 1.50702 * 109.47239 * 270.00195 * 4 3 2 6 6 H 1.08009 * 119.99568 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00069 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47284 * 59.99997 * 9 7 5 11 11 H 1.48496 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47291 * 300.00105 * 9 7 5 13 13 C 1.34781 * 120.00298 * 89.99818 * 3 2 1 14 14 O 1.21591 * 120.00097 * 180.02562 * 13 3 2 15 15 N 1.34773 * 119.99588 * 0.02562 * 13 3 2 16 16 C 1.39944 * 119.99863 * 184.58962 * 15 13 3 17 17 C 1.38944 * 120.03400 * 324.88021 * 16 15 13 18 18 C 1.38139 * 120.06796 * 180.02562 * 17 16 15 19 19 C 1.38185 * 120.13888 * 359.67401 * 18 17 16 20 20 C 1.38892 * 120.06760 * 0.59869 * 19 18 17 21 21 N 1.39946 * 120.03294 * 179.69907 * 20 19 18 22 22 C 1.47093 * 125.56012 * 359.72171 * 21 20 19 23 23 C 1.54093 * 103.90882 * 180.02562 * 22 21 20 24 24 O 1.45699 * 104.00997 * 359.92919 * 23 22 21 25 25 C 1.33783 * 109.47460 * 0.02562 * 24 23 22 26 26 O 1.21516 * 123.06771 * 180.02562 * 25 24 23 27 27 C 1.38720 * 120.03678 * 144.89838 * 16 15 13 28 28 H 1.09003 * 109.47167 * 300.00231 * 1 2 3 29 29 H 1.09002 * 109.47327 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47167 * 239.99769 * 2 1 3 32 32 H 1.09000 * 109.46926 * 120.00412 * 2 1 3 33 33 H 1.08999 * 109.46986 * 29.99555 * 4 3 2 34 34 H 1.08991 * 109.47269 * 149.99709 * 4 3 2 35 35 H 0.97001 * 120.00621 * 179.97438 * 8 7 5 36 36 H 0.97002 * 119.99997 * 4.58288 * 15 13 3 37 37 H 1.08002 * 119.96236 * 0.02562 * 17 16 15 38 38 H 1.07995 * 119.92565 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.96570 * 180.29422 * 19 18 17 40 40 H 1.09002 * 110.56118 * 61.42820 * 22 21 20 41 41 H 1.09001 * 110.56775 * 298.72272 * 22 21 20 42 42 H 1.09003 * 110.51999 * 118.56405 * 23 22 21 43 43 H 1.08999 * 110.51974 * 241.29422 * 23 22 21 44 44 H 1.07996 * 120.07045 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1491 2.3895 -2.8780 8 7 3.3492 3.1257 -3.6181 9 14 5.9135 2.0965 -3.4169 10 1 6.1417 0.6398 -3.5936 11 1 6.1610 2.7965 -4.7029 12 1 6.8407 2.6208 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1631 1.1672 15 7 2.0187 1.3811 2.3344 16 6 2.1594 2.0699 3.5444 17 6 3.1418 3.0430 3.6805 18 6 3.2816 3.7230 4.8748 19 6 2.4412 3.4428 5.9353 20 6 1.4609 2.4671 5.8074 21 7 0.6143 2.1795 6.8839 22 6 0.6575 2.8283 8.2033 23 6 -0.4749 2.1417 8.9910 24 8 -1.0354 1.1873 8.0435 25 6 -0.3723 1.2679 6.8843 26 8 -0.6379 0.5789 5.9192 27 6 1.3185 1.7816 4.6093 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1409 -1.1384 35 1 3.6753 3.5162 -4.4440 36 1 1.7598 0.4462 2.3357 37 1 3.7967 3.2680 2.8517 38 1 4.0462 4.4787 4.9782 39 1 2.5499 3.9794 6.8661 40 1 0.4650 3.8972 8.1108 41 1 1.6199 2.6539 8.6844 42 1 -0.0746 1.6243 9.8630 43 1 -1.2283 2.8702 9.2905 44 1 0.5541 1.0258 4.5060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126571877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:03 Heat of formation + Delta-G solvation = -46.488994 kcal Electronic energy + Delta-G solvation = -28482.496817 eV Core-core repulsion = 24401.338648 eV Total energy + Delta-G solvation = -4081.158170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18841 -40.23021 -38.71615 -37.58905 -36.10388 -35.21696 -34.14550 -32.66897 -31.10643 -30.11290 -29.65126 -29.08562 -26.83887 -24.62199 -23.91121 -23.16496 -22.99884 -21.65781 -21.15332 -19.37749 -18.36815 -17.85433 -17.56367 -17.24863 -16.47763 -16.27454 -16.05501 -15.36231 -15.07270 -14.76474 -14.61251 -14.49629 -14.31648 -14.14637 -13.76151 -13.67857 -13.48011 -13.23470 -12.89180 -12.64195 -12.38326 -12.03827 -11.88535 -11.76287 -11.68406 -11.19526 -11.18364 -10.93090 -10.75419 -10.71764 -10.50811 -10.39212 -10.11432 -9.85520 -9.64606 -9.18325 -8.41159 -8.30856 -7.89335 -7.55811 -6.01920 -4.06653 1.31678 1.43339 1.91580 2.44469 2.93168 3.23532 3.33545 3.37860 3.41547 3.57509 3.69777 4.05338 4.16433 4.16771 4.38914 4.52466 4.67766 4.77194 4.90844 5.04862 5.14252 5.30303 5.31928 5.38948 5.51389 5.60246 5.63510 5.72068 5.79908 6.03503 6.21145 6.23355 6.26965 6.49662 6.54577 6.59035 6.76657 6.88438 6.99462 7.27770 7.38463 7.53459 7.61615 7.69856 7.96070 8.25452 8.60294 8.93817 9.25603 9.58581 11.05913 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002665 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.738660 B =10503.505549 C =11459.315311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.700 3.300 14 O -0.568 6.568 15 N -0.695 5.695 16 C 0.211 3.789 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.180 4.180 20 C 0.190 3.810 21 N -0.567 5.567 22 C 0.060 3.940 23 C 0.042 3.958 24 O -0.322 6.322 25 C 0.642 3.358 26 O -0.499 6.499 27 C -0.190 4.190 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.403 0.597 37 H 0.149 0.851 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 -2.432 26.191 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.340 5.340 4 C 0.141 3.859 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.402 3.598 14 O -0.444 6.444 15 N -0.344 5.344 16 C 0.113 3.887 17 C -0.160 4.160 18 C -0.093 4.093 19 C -0.202 4.202 20 C 0.098 3.902 21 N -0.305 5.305 22 C -0.063 4.063 23 C -0.033 4.033 24 O -0.232 6.232 25 C 0.397 3.603 26 O -0.382 6.382 27 C -0.213 4.213 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.240 0.760 37 H 0.166 0.834 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.084 -2.043 25.455 26.252 hybrid contribution 0.861 -0.471 -0.209 1.003 sum -5.223 -2.514 25.247 25.904 Atomic orbital electron populations 1.22246 0.96575 1.01564 1.02604 1.21379 0.93691 0.84247 1.02426 1.47624 1.66873 1.13339 1.06195 1.19232 0.96199 0.93515 0.76906 1.21420 0.96971 1.31941 1.06210 0.92526 1.24920 0.97811 0.94947 0.96381 1.69919 1.35715 1.33399 1.14373 0.86561 0.84855 0.78208 0.77789 1.20300 1.21215 1.20205 1.15907 0.79141 0.84752 0.80026 1.90880 1.51340 1.16685 1.85482 1.43001 1.73456 1.14297 1.03628 1.17314 0.92875 0.93805 0.84705 1.21531 0.98390 0.97515 0.98540 1.20808 0.98063 0.98591 0.91804 1.20536 0.98426 1.00684 1.00522 1.16932 0.91189 0.96850 0.85207 1.45371 1.33261 1.38646 1.13192 1.22951 1.01067 0.99725 0.82560 1.24360 0.95643 0.91342 0.91962 1.87332 1.55146 1.57809 1.22956 1.18553 0.78477 0.80242 0.83031 1.90972 1.69093 1.46691 1.31456 1.21120 1.02416 1.05710 0.92031 0.92955 0.91837 0.92042 0.89466 0.92449 0.94765 0.93708 0.92668 0.75971 0.83368 0.85234 0.86071 0.88108 0.88090 0.87150 0.87139 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.11 1.77 5.93 -4.05 -0.02 1.74 16 3 N -0.61 -13.09 2.46 -180.81 -0.44 -13.53 16 4 C 0.26 6.85 5.16 -5.19 -0.03 6.82 16 5 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.70 15.26 8.12 -86.92 -0.71 14.55 16 14 O -0.57 -14.49 13.35 5.29 0.07 -14.42 16 15 N -0.69 -12.12 5.21 -14.24 -0.07 -12.19 16 16 C 0.21 3.52 6.30 -83.71 -0.53 2.99 16 17 C -0.14 -2.29 8.69 -39.36 -0.34 -2.64 16 18 C -0.07 -0.94 10.03 -39.64 -0.40 -1.34 16 19 C -0.18 -1.98 9.49 -39.36 -0.37 -2.35 16 20 C 0.19 2.41 6.63 -83.72 -0.56 1.86 16 21 N -0.57 -5.87 3.17 -118.19 -0.37 -6.25 16 22 C 0.06 0.28 6.47 -3.15 -0.02 0.26 16 23 C 0.04 0.15 8.23 37.73 0.31 0.46 16 24 O -0.32 -3.12 11.09 -37.86 -0.42 -3.54 16 25 C 0.64 8.05 8.78 53.85 0.47 8.52 16 26 O -0.50 -8.12 14.77 -19.12 -0.28 -8.40 16 27 C -0.19 -2.87 9.23 -39.21 -0.36 -3.23 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 32 H 0.06 0.80 6.30 -51.93 -0.33 0.47 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.40 5.95 6.52 -40.82 -0.27 5.68 16 37 H 0.15 2.86 6.22 -52.49 -0.33 2.54 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.12 0.91 7.30 -52.49 -0.38 0.52 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.16 2.49 5.26 -52.49 -0.28 2.21 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -36.82 368.69 -8.57 -45.39 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.73 Total: 4.41 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -2.59 Total: 11.97 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.16 Total: -57.89 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.63 Total: -26.36 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.82 -8.57 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126571877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.096 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds