Wall clock time and date at job start Tue Mar 31 2020 18:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46492 * 109.47263 * 2 1 4 4 C 1.46505 * 120.00179 * 269.99960 * 3 2 1 5 5 C 1.50702 * 109.47239 * 270.00195 * 4 3 2 6 6 H 1.08009 * 119.99568 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00069 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47284 * 59.99997 * 9 7 5 11 11 H 1.48496 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47291 * 300.00105 * 9 7 5 13 13 C 1.34781 * 120.00298 * 89.99818 * 3 2 1 14 14 O 1.21591 * 120.00097 * 180.02562 * 13 3 2 15 15 N 1.34773 * 119.99588 * 0.02562 * 13 3 2 16 16 C 1.39944 * 119.99863 * 184.58962 * 15 13 3 17 17 C 1.38944 * 120.03400 * 324.88021 * 16 15 13 18 18 C 1.38139 * 120.06796 * 180.02562 * 17 16 15 19 19 C 1.38185 * 120.13888 * 359.67401 * 18 17 16 20 20 C 1.38892 * 120.06760 * 0.59869 * 19 18 17 21 21 N 1.39946 * 120.03294 * 179.69907 * 20 19 18 22 22 C 1.47093 * 125.56012 * 359.72171 * 21 20 19 23 23 C 1.54093 * 103.90882 * 180.02562 * 22 21 20 24 24 O 1.45699 * 104.00997 * 359.92919 * 23 22 21 25 25 C 1.33783 * 109.47460 * 0.02562 * 24 23 22 26 26 O 1.21516 * 123.06771 * 180.02562 * 25 24 23 27 27 C 1.38720 * 120.03678 * 144.89838 * 16 15 13 28 28 H 1.09003 * 109.47167 * 300.00231 * 1 2 3 29 29 H 1.09002 * 109.47327 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47167 * 239.99769 * 2 1 3 32 32 H 1.09000 * 109.46926 * 120.00412 * 2 1 3 33 33 H 1.08999 * 109.46986 * 29.99555 * 4 3 2 34 34 H 1.08991 * 109.47269 * 149.99709 * 4 3 2 35 35 H 0.97001 * 120.00621 * 179.97438 * 8 7 5 36 36 H 0.97002 * 119.99997 * 4.58288 * 15 13 3 37 37 H 1.08002 * 119.96236 * 0.02562 * 17 16 15 38 38 H 1.07995 * 119.92565 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.96570 * 180.29422 * 19 18 17 40 40 H 1.09002 * 110.56118 * 61.42820 * 22 21 20 41 41 H 1.09001 * 110.56775 * 298.72272 * 22 21 20 42 42 H 1.09003 * 110.51999 * 118.56405 * 23 22 21 43 43 H 1.08999 * 110.51974 * 241.29422 * 23 22 21 44 44 H 1.07996 * 120.07045 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1491 2.3895 -2.8780 8 7 3.3492 3.1257 -3.6181 9 14 5.9135 2.0965 -3.4169 10 1 6.1417 0.6398 -3.5936 11 1 6.1610 2.7965 -4.7029 12 1 6.8407 2.6208 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1631 1.1672 15 7 2.0187 1.3811 2.3344 16 6 2.1594 2.0699 3.5444 17 6 3.1418 3.0430 3.6805 18 6 3.2816 3.7230 4.8748 19 6 2.4412 3.4428 5.9353 20 6 1.4609 2.4671 5.8074 21 7 0.6143 2.1795 6.8839 22 6 0.6575 2.8283 8.2033 23 6 -0.4749 2.1417 8.9910 24 8 -1.0354 1.1873 8.0435 25 6 -0.3723 1.2679 6.8843 26 8 -0.6379 0.5789 5.9192 27 6 1.3185 1.7816 4.6093 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1409 -1.1384 35 1 3.6753 3.5162 -4.4440 36 1 1.7598 0.4462 2.3357 37 1 3.7967 3.2680 2.8517 38 1 4.0462 4.4787 4.9782 39 1 2.5499 3.9794 6.8661 40 1 0.4650 3.8972 8.1108 41 1 1.6199 2.6539 8.6844 42 1 -0.0746 1.6243 9.8630 43 1 -1.2283 2.8702 9.2905 44 1 0.5541 1.0258 4.5060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126571877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:00 Heat of formation + Delta-G solvation = -71.645018 kcal Electronic energy + Delta-G solvation = -28483.587665 eV Core-core repulsion = 24401.338648 eV Total energy + Delta-G solvation = -4082.249017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -42.93560 -41.70265 -39.91568 -38.52681 -37.34107 -36.67637 -35.52958 -34.69553 -31.90037 -31.67336 -30.80565 -29.96032 -28.73497 -25.49669 -24.94665 -24.81760 -24.36574 -22.69633 -22.30614 -20.76538 -19.52803 -19.01025 -18.55614 -18.46740 -18.03486 -17.59269 -17.27628 -16.64046 -16.47964 -16.28063 -15.79107 -15.32324 -15.22337 -15.16072 -15.06248 -14.91213 -14.67815 -14.51179 -14.33620 -13.71811 -13.57394 -13.32035 -13.28501 -13.12652 -12.97691 -12.75946 -12.71282 -12.53633 -12.21299 -12.00191 -11.97147 -11.75600 -11.58119 -11.37692 -11.08469 -10.81088 -10.63060 -9.64110 -9.32850 -8.86756 -8.20767 -6.35879 0.22930 0.32757 1.14147 1.37123 1.41453 1.48548 1.52408 1.71408 2.14883 2.39686 2.45264 2.85920 2.95298 3.08780 3.25699 3.52886 3.97185 3.99389 4.05730 4.20207 4.26875 4.31332 4.34094 4.43073 4.52555 4.53710 4.66892 4.72745 4.73607 4.81835 4.89867 4.96981 5.16661 5.23642 5.29704 5.31983 5.39530 5.46903 5.56093 5.62048 5.79345 6.04699 6.06127 6.06906 6.21711 6.72111 6.73580 6.99827 7.30597 7.59127 8.85796 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002665 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.738660 B =10503.505549 C =11459.315311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.613 5.613 4 C 0.279 3.721 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.696 3.304 14 O -0.614 6.614 15 N -0.680 5.680 16 C 0.182 3.818 17 C -0.166 4.166 18 C -0.067 4.067 19 C -0.153 4.153 20 C 0.192 3.808 21 N -0.566 5.566 22 C 0.052 3.948 23 C 0.037 3.963 24 O -0.337 6.337 25 C 0.637 3.363 26 O -0.551 6.551 27 C -0.199 4.199 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.027 0.973 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.414 0.586 37 H 0.111 0.889 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 -2.508 29.875 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.347 5.347 4 C 0.158 3.842 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.398 3.602 14 O -0.494 6.494 15 N -0.330 5.330 16 C 0.086 3.914 17 C -0.188 4.188 18 C -0.086 4.086 19 C -0.174 4.174 20 C 0.099 3.901 21 N -0.303 5.303 22 C -0.068 4.068 23 C -0.036 4.036 24 O -0.246 6.246 25 C 0.392 3.608 26 O -0.438 6.438 27 C -0.222 4.222 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.254 0.746 37 H 0.129 0.871 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.456 -2.154 29.246 29.829 hybrid contribution 0.581 -0.392 -1.114 1.316 sum -4.875 -2.545 28.133 28.665 Atomic orbital electron populations 1.22161 0.94721 1.03573 1.01526 1.21683 0.95184 0.81546 1.03748 1.47506 1.67249 1.15101 1.04816 1.18672 0.95436 0.91353 0.78789 1.21666 0.97785 1.32144 1.06523 0.92981 1.25839 1.02400 0.94439 0.96340 1.70042 1.37815 1.34098 1.14803 0.85466 0.79004 0.78955 0.77352 1.18580 1.20258 1.20322 1.16048 0.78803 0.84337 0.80964 1.90838 1.53352 1.18829 1.86367 1.42674 1.72833 1.14666 1.02801 1.17494 0.94290 0.94981 0.84645 1.21400 0.98821 0.99211 0.99375 1.21122 0.98739 0.98104 0.90633 1.20953 0.95899 0.99055 1.01530 1.17076 0.91589 0.96377 0.85069 1.45470 1.31940 1.38367 1.14510 1.23489 1.02991 1.00749 0.79619 1.24918 0.96193 0.91187 0.91302 1.87309 1.55197 1.59367 1.22764 1.18794 0.78725 0.80022 0.83216 1.90924 1.70589 1.48675 1.33641 1.21065 1.02031 1.06193 0.92936 0.93341 0.93564 0.88394 0.89724 0.89474 0.95475 0.98262 0.92357 0.74648 0.87081 0.82465 0.80995 0.85616 0.85146 0.84142 0.84441 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 10.24 71.98 0.74 -3.92 16 2 C 0.10 3.39 5.93 86.38 0.51 3.90 16 3 N -0.61 -27.94 2.46 -844.21 -2.07 -30.01 16 4 C 0.28 15.60 5.16 85.63 0.44 16.04 16 5 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.70 32.34 8.12 179.05 1.45 33.79 16 14 O -0.61 -33.79 13.35 -4.00 -0.05 -33.85 16 15 N -0.68 -25.00 5.21 -317.23 -1.65 -26.66 16 16 C 0.18 6.34 6.30 38.13 0.24 6.58 16 17 C -0.17 -5.72 8.69 22.42 0.19 -5.53 16 18 C -0.07 -1.59 10.03 22.23 0.22 -1.37 16 19 C -0.15 -2.79 9.49 22.41 0.21 -2.58 16 20 C 0.19 4.49 6.63 38.13 0.25 4.74 16 21 N -0.57 -10.14 3.17 -759.21 -2.41 -12.55 16 22 C 0.05 0.21 6.47 86.64 0.56 0.77 16 23 C 0.04 0.11 8.23 72.35 0.60 0.70 16 24 O -0.34 -5.82 11.09 -47.43 -0.53 -6.34 16 25 C 0.64 15.27 8.78 129.86 1.14 16.41 16 26 O -0.55 -18.37 14.77 19.63 0.29 -18.08 16 27 C -0.20 -6.10 9.23 22.51 0.21 -5.89 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 32 H 0.09 2.39 6.30 -2.39 -0.02 2.38 16 33 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.41 12.69 6.52 -92.71 -0.60 12.09 16 37 H 0.11 4.66 6.22 -2.91 -0.02 4.64 16 38 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.17 1.41 7.30 -2.91 -0.02 1.39 16 40 H 0.13 -0.04 8.14 -2.39 -0.02 -0.05 16 41 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.14 4.78 5.26 -2.91 -0.02 4.76 16 Total: -1.00 -88.59 368.69 3.80 -84.79 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.44 Total: 18.85 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 7.48 Total: 32.87 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -5.85 Total: -125.89 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -0.29 Total: -58.27 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -88.59 3.80 -84.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126571877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.146 kcal (2) G-P(sol) polarization free energy of solvation -88.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds