Wall clock time and date at job start Tue Mar 31 2020 19:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33427 * 119.99770 * 2 1 4 4 C 1.46322 * 119.99518 * 180.02562 * 3 2 1 5 5 C 1.35231 * 119.99644 * 179.97438 * 4 3 2 6 6 C 1.46178 * 119.99812 * 179.97438 * 5 4 3 7 7 O 1.21721 * 119.99825 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.38305 * 119.99729 * 175.53486 * 8 6 5 10 10 C 1.39295 * 126.43401 * 107.73466 * 9 8 6 11 11 C 1.46714 * 126.52039 * 0.02562 * 10 9 8 12 12 O 1.21598 * 119.99923 * 359.97438 * 11 10 9 13 13 O 1.34833 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.45201 * 117.00221 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47246 * 180.02562 * 14 13 11 16 16 C 1.41473 * 106.96284 * 179.97438 * 10 9 8 17 17 N 1.30308 * 108.18242 * 359.97438 * 16 10 9 18 18 N 1.34795 * 126.44546 * 287.42259 * 9 8 6 19 19 C 1.46500 * 125.74243 * 359.97438 * 18 9 8 20 20 C 1.50701 * 109.46866 * 91.22177 * 19 18 9 21 21 H 1.07999 * 120.00691 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99868 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00348 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99980 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47098 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47379 * 119.99801 * 24 22 20 27 27 H 1.48506 * 109.46968 * 239.99514 * 24 22 20 28 28 H 1.09010 * 109.47362 * 300.00516 * 1 2 3 29 29 H 1.09004 * 109.47432 * 59.99826 * 1 2 3 30 30 H 1.08994 * 109.47472 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.99936 * 179.97438 * 2 1 3 32 32 H 1.07993 * 120.00294 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.00188 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00343 * 359.72691 * 5 4 3 35 35 H 0.96995 * 119.99522 * 355.53975 * 8 6 5 36 36 H 1.08996 * 109.47284 * 300.00246 * 14 13 11 37 37 H 1.08999 * 109.47135 * 60.00062 * 14 13 11 38 38 H 1.09000 * 109.47046 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.46560 * 300.00202 * 15 14 13 40 40 H 1.08999 * 109.47023 * 59.99969 * 15 14 13 41 41 H 1.08009 * 125.91380 * 179.97438 * 16 10 9 42 42 H 1.08995 * 109.47480 * 211.21944 * 19 18 9 43 43 H 1.08995 * 109.47394 * 331.22303 * 19 18 9 44 44 H 0.96998 * 120.00362 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6373 1.1555 -0.0006 5 6 4.3134 2.3266 -0.0011 6 6 5.7752 2.3266 -0.0011 7 8 6.3838 1.2724 -0.0001 8 7 6.4491 3.4938 -0.0011 9 6 7.8290 3.4956 0.0922 10 6 8.7268 3.7962 -0.9295 11 6 8.3884 4.1711 -2.3070 12 8 7.2237 4.2425 -2.6490 13 8 9.3688 4.4365 -3.1938 14 6 8.9604 4.8004 -4.5388 15 6 10.2010 5.0620 -5.3953 16 6 10.0271 3.6724 -0.3860 17 7 9.9137 3.3250 0.8647 18 7 8.5578 3.2124 1.1902 19 6 8.0203 2.8469 2.5031 20 6 7.8905 1.3482 2.5932 21 1 8.1790 0.7298 1.7561 22 6 7.4024 0.7664 3.7440 23 7 7.0506 1.5193 4.7633 24 14 7.2422 -1.0914 3.8559 25 1 7.7022 -1.7053 2.5844 26 1 8.0750 -1.5934 4.9782 27 1 5.8214 -1.4522 4.0939 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.0469 -0.9353 0.0004 32 1 1.6341 2.0908 -0.0004 33 1 4.1772 0.2202 -0.0006 34 1 3.7735 3.2619 -0.0055 35 1 5.9663 4.3325 -0.0664 36 1 8.3827 3.9860 -4.9759 37 1 8.3478 5.7011 -4.5013 38 1 9.8943 5.3357 -6.4049 39 1 10.7790 5.8763 -4.9582 40 1 10.8132 4.1610 -5.4328 41 1 10.9537 3.8373 -0.9161 42 1 8.6945 3.2006 3.2831 43 1 7.0401 3.3050 2.6349 44 1 6.7075 1.1100 5.5730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136853967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:51 Heat of formation + Delta-G solvation = -19.643238 kcal Electronic energy + Delta-G solvation = -28338.709342 eV Core-core repulsion = 24258.715291 eV Total energy + Delta-G solvation = -4079.994050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12479 -39.61612 -38.91958 -36.17508 -35.82174 -34.40482 -33.73861 -32.23704 -31.93594 -31.41686 -29.21059 -27.55328 -27.13730 -24.36990 -23.11758 -23.00966 -22.06121 -20.47647 -20.02977 -19.52550 -19.41932 -17.59968 -17.14830 -16.87131 -16.48735 -16.26759 -15.80026 -14.91134 -14.72099 -14.53944 -14.31408 -14.11632 -13.71968 -13.56080 -13.51050 -13.37189 -13.25460 -13.01843 -12.74108 -12.27736 -12.12158 -11.84810 -11.83560 -11.79022 -11.58206 -11.30316 -11.03704 -10.95760 -10.78969 -10.68141 -10.38574 -10.25597 -9.94077 -9.84150 -9.61882 -9.30939 -8.61323 -8.60305 -8.27548 -8.10994 -6.23656 -4.27085 0.89288 1.73994 2.56546 2.70562 2.76056 3.12390 3.24849 3.31901 3.42878 3.59359 3.68806 3.86272 4.36762 4.71208 4.90731 4.93023 4.93908 5.02883 5.14602 5.14794 5.24666 5.29277 5.36787 5.38170 5.42375 5.57190 5.60653 5.72035 5.72388 5.75353 5.88332 6.08689 6.13378 6.39957 6.45396 6.53156 6.69961 6.76152 6.77741 6.85562 7.07603 7.54634 7.69538 7.80084 7.84485 8.15610 8.28549 8.61056 8.82034 9.38712 10.85282 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.004367 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.699673 B = 6409.508436 C = 9286.422643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C -0.146 4.146 4 C -0.035 4.035 5 C -0.195 4.195 6 C 0.556 3.444 7 O -0.494 6.494 8 N -0.654 5.654 9 C 0.388 3.612 10 C -0.310 4.310 11 C 0.551 3.449 12 O -0.528 6.528 13 O -0.357 6.357 14 C 0.065 3.935 15 C -0.151 4.151 16 C 0.088 3.912 17 N -0.279 5.279 18 N -0.301 5.301 19 C 0.250 3.750 20 C -0.519 4.519 21 H 0.074 0.926 22 C 0.066 3.934 23 N -0.897 5.897 24 Si 0.906 3.094 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.190 0.810 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 5.945 -14.020 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C -0.164 4.164 4 C -0.055 4.055 5 C -0.216 4.216 6 C 0.345 3.655 7 O -0.366 6.366 8 N -0.307 5.307 9 C 0.158 3.842 10 C -0.325 4.325 11 C 0.399 3.601 12 O -0.419 6.419 13 O -0.274 6.274 14 C -0.009 4.009 15 C -0.209 4.209 16 C -0.099 4.099 17 N -0.100 5.100 18 N -0.080 5.080 19 C 0.133 3.867 20 C -0.558 4.558 21 H 0.092 0.908 22 C -0.137 4.137 23 N -0.536 5.536 24 Si 0.733 3.267 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.207 0.793 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.547 4.846 -12.695 14.677 hybrid contribution -0.896 -0.254 -0.571 1.092 sum -6.443 4.592 -13.266 15.446 Atomic orbital electron populations 1.20896 0.92713 1.02631 1.02242 1.23715 0.96296 0.98078 0.96664 1.21797 0.92830 0.98546 1.03250 1.22516 0.93149 0.98688 0.91145 1.22714 0.92353 0.99286 1.07289 1.18291 0.88189 0.82975 0.76041 1.90914 1.69852 1.30327 1.45527 1.42221 1.02169 1.10270 1.76074 1.17579 0.83377 0.96148 0.87124 1.18826 0.93762 1.28202 0.91758 1.19795 0.82905 0.72883 0.84557 1.90792 1.20362 1.51035 1.79677 1.86555 1.38979 1.80154 1.21737 1.22901 0.97833 1.00572 0.79637 1.21793 0.97397 1.03069 0.98592 1.23836 0.97064 0.97100 0.91899 1.77238 0.94655 1.22481 1.15673 1.49956 1.03186 1.44298 1.10574 1.19945 0.94742 0.98025 0.74008 1.21301 1.43651 0.89679 1.01152 0.90789 1.24862 0.94686 0.99135 0.94977 1.69929 1.43361 1.35544 1.04727 0.86286 0.77777 0.84392 0.78255 1.19322 1.20812 1.20780 0.91212 0.91296 0.91815 0.86707 0.86386 0.85187 0.85423 0.74497 0.91570 0.91557 0.90589 0.91531 0.91496 0.79311 0.92155 0.93060 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.19 36.00 0.37 -0.66 16 2 C -0.13 -1.37 9.98 -35.99 -0.36 -1.72 16 3 C -0.15 -1.73 9.48 -38.02 -0.36 -2.09 16 4 C -0.04 -0.53 9.38 -37.40 -0.35 -0.88 16 5 C -0.20 -3.06 9.71 -37.47 -0.36 -3.43 16 6 C 0.56 11.14 7.69 -13.07 -0.10 11.04 16 7 O -0.49 -12.08 14.77 5.17 0.08 -12.00 16 8 N -0.65 -12.18 4.43 -12.42 -0.06 -12.24 16 9 C 0.39 8.12 6.47 -153.55 -0.99 7.13 16 10 C -0.31 -5.96 6.15 -104.85 -0.64 -6.61 16 11 C 0.55 9.81 7.94 34.15 0.27 10.08 16 12 O -0.53 -10.03 16.09 -19.34 -0.31 -10.34 16 13 O -0.36 -5.34 10.07 -40.85 -0.41 -5.75 16 14 C 0.06 0.75 6.20 37.16 0.23 0.98 16 15 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 16 C 0.09 1.60 11.86 -16.97 -0.20 1.40 16 17 N -0.28 -6.07 12.47 30.88 0.39 -5.68 16 18 N -0.30 -6.96 3.58 -61.15 -0.22 -7.18 16 19 C 0.25 6.37 6.10 -5.19 -0.03 6.34 16 20 C -0.52 -14.63 8.42 -34.44 -0.29 -14.92 16 21 H 0.07 2.25 7.38 -52.49 -0.39 1.86 16 22 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 23 N -0.90 -25.47 13.29 55.43 0.74 -24.74 16 24 Si 0.91 22.23 29.54 -169.99 -5.02 17.21 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.11 1.21 8.05 -52.49 -0.42 0.78 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 2.16 7.52 -52.49 -0.39 1.77 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.42 6.21 8.80 -40.82 -0.36 5.85 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.19 2.63 8.06 -52.48 -0.42 2.21 16 42 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.05 1.32 8.04 -51.93 -0.42 0.90 16 44 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -34.34 396.42 -7.58 -41.91 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.19 Total: 5.28 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -2.54 Total: 7.54 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.85 Total: -49.83 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.65 Total: -28.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.34 -7.58 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136853967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.271 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds