Wall clock time and date at job start Tue Mar 31 2020 19:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33427 * 119.99770 * 2 1 4 4 C 1.46322 * 119.99518 * 180.02562 * 3 2 1 5 5 C 1.35231 * 119.99644 * 179.97438 * 4 3 2 6 6 C 1.46178 * 119.99812 * 179.97438 * 5 4 3 7 7 O 1.21721 * 119.99825 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.38305 * 119.99729 * 175.53486 * 8 6 5 10 10 C 1.39295 * 126.43401 * 107.73466 * 9 8 6 11 11 C 1.46714 * 126.52039 * 0.02562 * 10 9 8 12 12 O 1.21598 * 119.99923 * 359.97438 * 11 10 9 13 13 O 1.34833 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.45201 * 117.00221 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47246 * 180.02562 * 14 13 11 16 16 C 1.41473 * 106.96284 * 179.97438 * 10 9 8 17 17 N 1.30308 * 108.18242 * 359.97438 * 16 10 9 18 18 N 1.34795 * 126.44546 * 287.42259 * 9 8 6 19 19 C 1.46500 * 125.74243 * 359.97438 * 18 9 8 20 20 C 1.50701 * 109.46866 * 91.22177 * 19 18 9 21 21 H 1.07999 * 120.00691 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99868 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00348 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99980 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47098 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47379 * 119.99801 * 24 22 20 27 27 H 1.48506 * 109.46968 * 239.99514 * 24 22 20 28 28 H 1.09010 * 109.47362 * 300.00516 * 1 2 3 29 29 H 1.09004 * 109.47432 * 59.99826 * 1 2 3 30 30 H 1.08994 * 109.47472 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.99936 * 179.97438 * 2 1 3 32 32 H 1.07993 * 120.00294 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.00188 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00343 * 359.72691 * 5 4 3 35 35 H 0.96995 * 119.99522 * 355.53975 * 8 6 5 36 36 H 1.08996 * 109.47284 * 300.00246 * 14 13 11 37 37 H 1.08999 * 109.47135 * 60.00062 * 14 13 11 38 38 H 1.09000 * 109.47046 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.46560 * 300.00202 * 15 14 13 40 40 H 1.08999 * 109.47023 * 59.99969 * 15 14 13 41 41 H 1.08009 * 125.91380 * 179.97438 * 16 10 9 42 42 H 1.08995 * 109.47480 * 211.21944 * 19 18 9 43 43 H 1.08995 * 109.47394 * 331.22303 * 19 18 9 44 44 H 0.96998 * 120.00362 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6373 1.1555 -0.0006 5 6 4.3134 2.3266 -0.0011 6 6 5.7752 2.3266 -0.0011 7 8 6.3838 1.2724 -0.0001 8 7 6.4491 3.4938 -0.0011 9 6 7.8290 3.4956 0.0922 10 6 8.7268 3.7962 -0.9295 11 6 8.3884 4.1711 -2.3070 12 8 7.2237 4.2425 -2.6490 13 8 9.3688 4.4365 -3.1938 14 6 8.9604 4.8004 -4.5388 15 6 10.2010 5.0620 -5.3953 16 6 10.0271 3.6724 -0.3860 17 7 9.9137 3.3250 0.8647 18 7 8.5578 3.2124 1.1902 19 6 8.0203 2.8469 2.5031 20 6 7.8905 1.3482 2.5932 21 1 8.1790 0.7298 1.7561 22 6 7.4024 0.7664 3.7440 23 7 7.0506 1.5193 4.7633 24 14 7.2422 -1.0914 3.8559 25 1 7.7022 -1.7053 2.5844 26 1 8.0750 -1.5934 4.9782 27 1 5.8214 -1.4522 4.0939 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.0469 -0.9353 0.0004 32 1 1.6341 2.0908 -0.0004 33 1 4.1772 0.2202 -0.0006 34 1 3.7735 3.2619 -0.0055 35 1 5.9663 4.3325 -0.0664 36 1 8.3827 3.9860 -4.9759 37 1 8.3478 5.7011 -4.5013 38 1 9.8943 5.3357 -6.4049 39 1 10.7790 5.8763 -4.9582 40 1 10.8132 4.1610 -5.4328 41 1 10.9537 3.8373 -0.9161 42 1 8.6945 3.2006 3.2831 43 1 7.0401 3.3050 2.6349 44 1 6.7075 1.1100 5.5730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136853967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:47 Heat of formation + Delta-G solvation = -40.268149 kcal Electronic energy + Delta-G solvation = -28339.603705 eV Core-core repulsion = 24258.715291 eV Total energy + Delta-G solvation = -4080.888414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -42.70608 -40.95814 -40.47328 -37.47475 -36.82477 -36.01613 -35.71767 -33.66766 -33.27748 -32.51295 -30.69250 -29.35075 -28.24120 -25.95222 -24.70662 -24.25554 -23.29568 -21.92813 -21.25959 -21.05059 -20.55398 -19.15954 -18.85291 -18.37079 -18.15855 -17.43749 -17.21582 -16.74989 -16.24373 -15.89691 -15.67046 -15.57252 -15.27113 -14.91558 -14.69619 -14.42476 -14.31252 -14.19057 -14.12415 -13.76694 -13.51620 -13.15330 -13.08640 -12.82272 -12.81696 -12.68226 -12.51938 -12.36329 -12.30151 -12.19399 -11.89041 -11.77850 -11.43541 -11.40853 -11.27110 -10.91702 -10.75998 -10.32041 -9.75110 -9.29279 -8.38461 -6.48478 -0.25970 0.19328 1.05142 1.22757 1.28482 1.29879 1.45617 1.56978 1.82076 2.09468 2.21838 2.32718 2.44829 2.93838 3.58639 3.68844 3.88859 3.97363 4.09019 4.14652 4.17740 4.20254 4.27477 4.40570 4.48382 4.51465 4.68124 4.73975 4.82469 4.84870 4.95082 4.96671 5.00297 5.02323 5.19835 5.21031 5.37205 5.46069 5.51452 5.54463 5.61080 5.72949 5.79864 5.91365 6.27367 6.55689 6.64409 6.85988 7.10843 7.20504 8.70270 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.004367 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.699673 B = 6409.508436 C = 9286.422643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.166 4.166 4 C -0.024 4.024 5 C -0.216 4.216 6 C 0.548 3.452 7 O -0.552 6.552 8 N -0.646 5.646 9 C 0.376 3.624 10 C -0.314 4.314 11 C 0.556 3.444 12 O -0.543 6.543 13 O -0.353 6.353 14 C 0.055 3.945 15 C -0.144 4.144 16 C 0.107 3.893 17 N -0.313 5.313 18 N -0.327 5.327 19 C 0.270 3.730 20 C -0.528 4.528 21 H 0.044 0.956 22 C 0.027 3.973 23 N -0.917 5.917 24 Si 0.959 3.041 25 H -0.284 1.284 26 H -0.267 1.267 27 H -0.269 1.269 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.167 0.833 35 H 0.432 0.568 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.234 0.766 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 6.375 -15.529 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.129 4.129 3 C -0.184 4.184 4 C -0.044 4.044 5 C -0.237 4.237 6 C 0.340 3.660 7 O -0.429 6.429 8 N -0.300 5.300 9 C 0.147 3.853 10 C -0.330 4.330 11 C 0.403 3.597 12 O -0.434 6.434 13 O -0.270 6.270 14 C -0.018 4.018 15 C -0.201 4.201 16 C -0.079 4.079 17 N -0.134 5.134 18 N -0.106 5.106 19 C 0.151 3.849 20 C -0.567 4.567 21 H 0.062 0.938 22 C -0.173 4.173 23 N -0.556 5.556 24 Si 0.784 3.216 25 H -0.210 1.210 26 H -0.192 1.192 27 H -0.194 1.194 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.161 0.839 33 H 0.122 0.878 34 H 0.184 0.816 35 H 0.274 0.726 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.251 0.749 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.829 5.330 -14.219 16.650 hybrid contribution -0.528 -0.418 -0.275 0.728 sum -7.358 4.912 -14.494 16.981 Atomic orbital electron populations 1.20974 0.90304 1.03830 1.03326 1.24073 0.98095 0.97509 0.93256 1.21836 0.90758 1.00224 1.05550 1.22672 0.95117 0.97439 0.89125 1.22781 0.89802 1.01276 1.09818 1.19099 0.89925 0.82332 0.74620 1.90876 1.71241 1.32158 1.48643 1.42276 1.01559 1.10915 1.75289 1.18018 0.84497 0.95727 0.87073 1.19107 0.93865 1.27582 0.92422 1.19541 0.83079 0.72624 0.84410 1.90780 1.21077 1.51643 1.79947 1.86541 1.37934 1.79555 1.22926 1.23305 0.99857 1.00658 0.78026 1.21820 0.95842 1.03317 0.99114 1.24547 0.98305 0.94397 0.90667 1.77182 0.94218 1.24351 1.17638 1.49667 1.04072 1.46445 1.10379 1.19395 0.93896 0.96389 0.75204 1.21241 1.44112 0.90894 1.00427 0.93776 1.25519 0.94267 1.02891 0.94634 1.69979 1.43539 1.36968 1.05079 0.85490 0.78526 0.79866 0.77732 1.20971 1.19206 1.19354 0.90279 0.89759 0.90695 0.87219 0.83895 0.87837 0.81552 0.72614 0.91936 0.90932 0.88005 0.90930 0.91495 0.74950 0.94057 0.93785 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 10.19 71.24 0.73 -0.91 16 2 C -0.11 -2.13 9.98 24.60 0.25 -1.88 16 3 C -0.17 -3.64 9.48 23.28 0.22 -3.42 16 4 C -0.02 -0.72 9.38 23.68 0.22 -0.49 16 5 C -0.22 -6.83 9.71 23.64 0.23 -6.60 16 6 C 0.55 22.85 7.69 86.30 0.66 23.51 16 7 O -0.55 -28.60 14.77 -4.41 -0.07 -28.67 16 8 N -0.65 -24.78 4.43 -311.40 -1.38 -26.16 16 9 C 0.38 16.20 6.47 132.61 0.86 17.06 16 10 C -0.31 -12.09 6.15 -20.01 -0.12 -12.21 16 11 C 0.56 19.38 7.94 70.04 0.56 19.93 16 12 O -0.54 -20.32 16.09 19.52 0.31 -20.01 16 13 O -0.35 -9.95 10.07 -57.46 -0.58 -10.53 16 14 C 0.05 1.16 6.20 71.98 0.45 1.60 16 15 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 16 C 0.11 3.85 11.86 85.72 1.02 4.87 16 17 N -0.31 -13.89 12.47 -56.22 -0.70 -14.60 16 18 N -0.33 -15.70 3.58 -347.39 -1.24 -16.94 16 19 C 0.27 14.45 6.10 85.63 0.52 14.97 16 20 C -0.53 -31.10 8.42 25.60 0.22 -30.89 16 21 H 0.04 2.83 7.38 -2.91 -0.02 2.81 16 22 C 0.03 1.57 5.46 84.65 0.46 2.03 16 23 N -0.92 -52.83 13.29 21.45 0.28 -52.54 16 24 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 25 H -0.28 -14.39 7.11 99.48 0.71 -13.69 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 28 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 2.19 8.05 -2.91 -0.02 2.17 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.10 3.65 7.52 -2.91 -0.02 3.63 16 34 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.43 13.08 8.80 -92.71 -0.82 12.26 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.23 5.93 8.06 -2.91 -0.02 5.91 16 42 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.04 2.38 8.04 -2.39 -0.02 2.36 16 44 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -77.76 396.42 5.86 -71.90 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.20 Total: 22.72 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 7.00 Total: 26.35 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -3.04 Total: -110.24 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -0.33 Total: -59.20 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.76 5.86 -71.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136853967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.629 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds