Wall clock time and date at job start Tue Mar 31 2020 18:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47228 * 2 1 4 4 C 1.34777 * 119.99566 * 180.02562 * 3 2 1 5 5 O 1.21585 * 120.00534 * 5.06450 * 4 3 2 6 6 N 1.34780 * 119.99675 * 185.06365 * 4 3 2 7 7 C 1.46968 * 120.59567 * 174.93310 * 6 4 3 8 8 C 1.53368 * 108.63533 * 235.20739 * 7 6 4 9 9 N 1.46964 * 108.63281 * 310.57220 * 8 7 6 10 10 S 1.65602 * 120.59397 * 235.20201 * 9 8 7 11 11 O 1.42096 * 104.27878 * 333.93360 * 10 9 8 12 12 O 1.42103 * 104.27892 * 206.07402 * 10 9 8 13 13 C 1.81401 * 104.44644 * 90.00302 * 10 9 8 14 14 C 1.53001 * 109.47294 * 179.97438 * 13 10 9 15 15 C 1.52997 * 109.47292 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.46910 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00416 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00055 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00068 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99844 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46827 * 89.99657 * 20 18 16 22 22 H 1.48495 * 109.46786 * 209.99698 * 20 18 16 23 23 H 1.48501 * 109.46888 * 329.99907 * 20 18 16 24 24 C 1.46964 * 118.81442 * 55.48245 * 9 8 7 25 25 C 1.46964 * 120.59424 * 354.90973 * 6 4 3 26 26 H 1.08999 * 109.46560 * 300.00064 * 1 2 3 27 27 H 1.09000 * 109.47200 * 59.99857 * 1 2 3 28 28 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46516 * 240.00334 * 2 1 3 30 30 H 1.08994 * 109.47354 * 120.01041 * 2 1 3 31 31 H 0.96993 * 120.00336 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.60648 * 115.45723 * 7 6 4 33 33 H 1.09005 * 109.74984 * 355.03661 * 7 6 4 34 34 H 1.09000 * 109.60902 * 190.82997 * 8 7 6 35 35 H 1.09000 * 109.61277 * 70.31642 * 8 7 6 36 36 H 1.09005 * 109.47062 * 60.00296 * 13 10 9 37 37 H 1.09001 * 109.47465 * 300.00155 * 13 10 9 38 38 H 1.09000 * 109.47043 * 59.99916 * 14 13 10 39 39 H 1.09001 * 109.47123 * 300.00526 * 14 13 10 40 40 H 1.08997 * 109.46842 * 299.99672 * 15 14 13 41 41 H 1.08997 * 109.47353 * 60.00658 * 15 14 13 42 42 H 0.97005 * 120.00000 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.61027 * 64.25986 * 24 9 8 44 44 H 1.08999 * 109.61689 * 184.77559 * 24 9 8 45 45 H 1.08993 * 109.61558 * 244.53882 * 25 6 4 46 46 H 1.09000 * 109.60951 * 5.05191 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6273 -0.0005 5 8 4.1328 0.7072 -0.0939 6 7 3.7937 2.8935 0.1025 7 6 5.2330 3.1689 0.2148 8 6 5.4748 4.0055 1.4773 9 7 4.5353 5.1356 1.4788 10 16 5.0884 6.6914 1.6055 11 8 6.3278 6.5681 2.2895 12 8 4.0019 7.4039 2.1808 13 6 5.3575 7.2171 -0.1097 14 6 5.8750 8.6568 -0.1267 15 6 6.1014 9.1004 -1.5733 16 6 6.6117 10.5183 -1.5899 17 1 6.7594 11.0500 -0.6615 18 6 6.8901 11.1368 -2.7903 19 7 7.3349 12.3743 -2.8048 20 14 6.6340 10.2174 -4.3962 21 1 5.2500 10.4473 -4.8828 22 1 7.6028 10.7097 -5.4082 23 1 6.8456 8.7645 -4.1738 24 6 3.0957 4.8600 1.3722 25 6 2.8542 4.0236 0.1040 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8898 31 1 1.3882 2.1184 -0.0004 32 1 5.5687 3.7234 -0.6615 33 1 5.7830 2.2306 0.2868 34 1 6.4982 4.3806 1.4770 35 1 5.3083 3.3902 2.3614 36 1 4.4171 7.1630 -0.6581 37 1 6.0906 6.5616 -0.5799 38 1 6.8154 8.7114 0.4219 39 1 5.1417 9.3120 0.3434 40 1 6.8346 8.4453 -2.0437 41 1 5.1609 9.0461 -2.1214 42 1 7.5311 12.8093 -3.6493 43 1 2.7637 4.3040 2.2490 44 1 2.5474 5.7995 1.3025 45 1 3.0206 4.6390 -0.7800 46 1 1.8307 3.6485 0.1043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177731131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:57 Heat of formation + Delta-G solvation = -93.687887 kcal Electronic energy + Delta-G solvation = -27367.900284 eV Core-core repulsion = 23420.139368 eV Total energy + Delta-G solvation = -3947.760916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.73386 -38.13020 -37.13995 -35.91661 -35.70897 -34.87047 -34.25447 -32.25267 -31.94976 -30.58696 -28.43371 -27.31458 -24.48772 -23.78332 -23.37914 -22.24520 -20.65482 -20.16309 -19.36469 -18.38427 -17.25278 -16.96327 -16.84454 -16.38623 -16.21222 -16.09773 -15.20982 -15.06806 -14.96558 -14.65292 -14.55399 -14.30126 -14.21266 -13.62648 -13.08072 -12.98924 -12.86279 -12.62907 -12.41147 -12.36269 -12.21827 -12.11017 -12.00895 -11.96190 -11.87397 -11.65942 -11.62667 -11.24467 -11.04886 -10.98798 -10.45808 -10.16723 -10.06812 -9.89022 -9.57386 -9.41971 -9.29254 -8.70339 -8.62042 -6.11523 -4.11076 0.24131 2.17211 2.58029 2.85096 3.23611 3.31754 3.33315 3.41861 3.85017 4.08236 4.18398 4.37180 4.45075 4.48380 4.62653 4.64383 4.79661 4.84750 4.86875 4.93207 4.97185 5.05071 5.07579 5.22046 5.32592 5.38653 5.41789 5.46602 5.52606 5.58410 5.69865 5.71242 6.01777 6.06162 6.08796 6.20623 6.23034 6.52359 6.61686 7.07839 7.22016 7.52456 7.67503 8.22061 8.44108 8.92776 9.49412 11.01702 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.002797 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.782731 B =10009.109686 C =10996.349469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.749 5.749 4 C 0.708 3.292 5 O -0.589 6.589 6 N -0.626 5.626 7 C 0.112 3.888 8 C 0.107 3.893 9 N -1.004 6.004 10 S 2.599 3.401 11 O -0.954 6.954 12 O -0.956 6.956 13 C -0.614 4.614 14 C -0.097 4.097 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.107 3.893 25 C 0.094 3.906 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.395 0.605 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 -24.253 6.323 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.408 5.408 4 C 0.410 3.590 5 O -0.467 6.467 6 N -0.363 5.363 7 C -0.012 4.012 8 C -0.020 4.020 9 N -0.841 5.841 10 S 2.696 3.304 11 O -0.944 6.944 12 O -0.946 6.946 13 C -0.746 4.746 14 C -0.137 4.137 15 C -0.042 4.042 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.020 4.020 25 C -0.032 4.032 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.099 0.901 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.499 -24.373 7.001 28.727 hybrid contribution -0.535 -0.085 -1.698 1.782 sum -14.034 -24.458 5.303 28.693 Atomic orbital electron populations 1.22017 0.94394 1.03344 1.02562 1.21159 0.93869 0.81784 1.02384 1.45369 1.05467 1.09211 1.80744 1.15820 0.82684 0.82841 0.77690 1.90924 1.54982 1.43031 1.57740 1.47123 1.07575 1.04074 1.77577 1.21949 0.80008 1.01451 0.97840 1.21857 0.93639 0.88032 0.98437 1.57893 1.12917 1.23221 1.90028 1.05508 0.74142 0.72490 0.78309 1.93578 1.45138 1.84647 1.71072 1.93571 1.54287 1.71296 1.75464 1.30660 1.11020 1.09496 1.23401 1.21318 1.00960 0.88423 1.02981 1.19521 0.96609 0.97500 0.90596 1.21127 1.44200 0.96418 0.94832 0.90729 1.25030 0.94495 0.94732 0.99159 1.69909 1.45101 1.12089 1.26696 0.86775 0.78220 0.80681 0.83569 1.20245 1.21251 1.19061 1.21873 0.80899 1.01410 0.97781 1.22190 0.93071 0.88704 0.99186 0.91942 0.91943 0.90619 0.91561 0.91691 0.76787 0.90765 0.87545 0.87538 0.90516 0.85509 0.85398 0.90962 0.91018 0.96183 0.96658 0.92595 0.90479 0.87583 0.90125 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.03 37.16 0.37 -0.19 16 2 C 0.13 0.83 6.40 -4.04 -0.03 0.80 16 3 N -0.75 -5.32 5.47 -65.22 -0.36 -5.67 16 4 C 0.71 7.38 8.29 -86.91 -0.72 6.66 16 5 O -0.59 -8.45 15.78 5.29 0.08 -8.37 16 6 N -0.63 -5.41 2.95 -177.94 -0.52 -5.94 16 7 C 0.11 0.97 6.58 -3.60 -0.02 0.95 16 8 C 0.11 0.94 6.48 -3.60 -0.02 0.92 16 9 N -1.00 -9.70 3.19 -113.00 -0.36 -10.06 16 10 S 2.60 34.13 5.42 -107.50 -0.58 33.54 16 11 O -0.95 -15.37 16.70 -57.54 -0.96 -16.33 16 12 O -0.96 -15.00 16.69 -57.54 -0.96 -15.96 16 13 C -0.61 -8.11 6.18 37.16 0.23 -7.88 16 14 C -0.10 -1.81 5.16 -26.73 -0.14 -1.95 16 15 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 16 C -0.53 -14.76 9.66 -34.44 -0.33 -15.10 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 20 Si 0.88 21.11 27.47 -169.99 -4.67 16.45 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 C 0.11 0.79 6.52 -3.36 -0.02 0.77 16 25 C 0.09 0.57 6.61 -3.36 -0.02 0.55 16 26 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.40 1.78 5.92 -40.82 -0.24 1.54 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 1.01 7.03 -51.93 -0.36 0.64 16 34 H 0.11 0.92 7.06 -51.93 -0.37 0.55 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.13 1.39 8.14 -51.92 -0.42 0.97 16 37 H 0.13 1.46 8.14 -51.92 -0.42 1.03 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.74 7.05 -51.93 -0.37 0.37 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.30 5.55 -51.93 -0.29 0.01 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -38.15 379.32 -10.23 -48.39 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.48 Total: -2.30 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.92 Total: -12.83 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.47 Total: -48.30 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.84 Total: -40.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 34.13 SS G_CDS: -0.58 Total: 33.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.15 -10.23 -48.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177731131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.302 kcal (2) G-P(sol) polarization free energy of solvation -38.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds