Wall clock time and date at job start Tue Mar 31 2020 18:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47228 * 2 1 4 4 C 1.34777 * 119.99566 * 180.02562 * 3 2 1 5 5 O 1.21585 * 120.00534 * 5.06450 * 4 3 2 6 6 N 1.34780 * 119.99675 * 185.06365 * 4 3 2 7 7 C 1.46968 * 120.59567 * 174.93310 * 6 4 3 8 8 C 1.53368 * 108.63533 * 235.20739 * 7 6 4 9 9 N 1.46964 * 108.63281 * 310.57220 * 8 7 6 10 10 S 1.65602 * 120.59397 * 235.20201 * 9 8 7 11 11 O 1.42096 * 104.27878 * 333.93360 * 10 9 8 12 12 O 1.42103 * 104.27892 * 206.07402 * 10 9 8 13 13 C 1.81401 * 104.44644 * 90.00302 * 10 9 8 14 14 C 1.53001 * 109.47294 * 179.97438 * 13 10 9 15 15 C 1.52997 * 109.47292 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.46910 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00416 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00055 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00068 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99844 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46827 * 89.99657 * 20 18 16 22 22 H 1.48495 * 109.46786 * 209.99698 * 20 18 16 23 23 H 1.48501 * 109.46888 * 329.99907 * 20 18 16 24 24 C 1.46964 * 118.81442 * 55.48245 * 9 8 7 25 25 C 1.46964 * 120.59424 * 354.90973 * 6 4 3 26 26 H 1.08999 * 109.46560 * 300.00064 * 1 2 3 27 27 H 1.09000 * 109.47200 * 59.99857 * 1 2 3 28 28 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46516 * 240.00334 * 2 1 3 30 30 H 1.08994 * 109.47354 * 120.01041 * 2 1 3 31 31 H 0.96993 * 120.00336 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.60648 * 115.45723 * 7 6 4 33 33 H 1.09005 * 109.74984 * 355.03661 * 7 6 4 34 34 H 1.09000 * 109.60902 * 190.82997 * 8 7 6 35 35 H 1.09000 * 109.61277 * 70.31642 * 8 7 6 36 36 H 1.09005 * 109.47062 * 60.00296 * 13 10 9 37 37 H 1.09001 * 109.47465 * 300.00155 * 13 10 9 38 38 H 1.09000 * 109.47043 * 59.99916 * 14 13 10 39 39 H 1.09001 * 109.47123 * 300.00526 * 14 13 10 40 40 H 1.08997 * 109.46842 * 299.99672 * 15 14 13 41 41 H 1.08997 * 109.47353 * 60.00658 * 15 14 13 42 42 H 0.97005 * 120.00000 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.61027 * 64.25986 * 24 9 8 44 44 H 1.08999 * 109.61689 * 184.77559 * 24 9 8 45 45 H 1.08993 * 109.61558 * 244.53882 * 25 6 4 46 46 H 1.09000 * 109.60951 * 5.05191 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6273 -0.0005 5 8 4.1328 0.7072 -0.0939 6 7 3.7937 2.8935 0.1025 7 6 5.2330 3.1689 0.2148 8 6 5.4748 4.0055 1.4773 9 7 4.5353 5.1356 1.4788 10 16 5.0884 6.6914 1.6055 11 8 6.3278 6.5681 2.2895 12 8 4.0019 7.4039 2.1808 13 6 5.3575 7.2171 -0.1097 14 6 5.8750 8.6568 -0.1267 15 6 6.1014 9.1004 -1.5733 16 6 6.6117 10.5183 -1.5899 17 1 6.7594 11.0500 -0.6615 18 6 6.8901 11.1368 -2.7903 19 7 7.3349 12.3743 -2.8048 20 14 6.6340 10.2174 -4.3962 21 1 5.2500 10.4473 -4.8828 22 1 7.6028 10.7097 -5.4082 23 1 6.8456 8.7645 -4.1738 24 6 3.0957 4.8600 1.3722 25 6 2.8542 4.0236 0.1040 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8898 31 1 1.3882 2.1184 -0.0004 32 1 5.5687 3.7234 -0.6615 33 1 5.7830 2.2306 0.2868 34 1 6.4982 4.3806 1.4770 35 1 5.3083 3.3902 2.3614 36 1 4.4171 7.1630 -0.6581 37 1 6.0906 6.5616 -0.5799 38 1 6.8154 8.7114 0.4219 39 1 5.1417 9.3120 0.3434 40 1 6.8346 8.4453 -2.0437 41 1 5.1609 9.0461 -2.1214 42 1 7.5311 12.8093 -3.6493 43 1 2.7637 4.3040 2.2490 44 1 2.5474 5.7995 1.3025 45 1 3.0206 4.6390 -0.7800 46 1 1.8307 3.6485 0.1043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177731131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:56 Heat of formation + Delta-G solvation = -123.453235 kcal Electronic energy + Delta-G solvation = -27369.191007 eV Core-core repulsion = 23420.139368 eV Total energy + Delta-G solvation = -3949.051638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42977 -38.83486 -38.28335 -37.06501 -36.49478 -36.35146 -34.99232 -34.23883 -32.54597 -31.08196 -30.14588 -27.98359 -25.41346 -25.08332 -23.96369 -22.97727 -22.14371 -21.01672 -20.12289 -19.32691 -18.96560 -18.07355 -17.58150 -17.29466 -17.26373 -16.85509 -16.24378 -16.18286 -15.66977 -15.55809 -15.47504 -15.31124 -15.17573 -14.86030 -14.30046 -14.07573 -13.72137 -13.64545 -13.56261 -13.23837 -13.21947 -13.20456 -13.06954 -12.73527 -12.68941 -12.54685 -12.46812 -12.36489 -12.33172 -12.04033 -11.84338 -11.63616 -11.41562 -11.37404 -11.23403 -10.77058 -10.54473 -10.12625 -9.36007 -8.29414 -6.35274 -0.80319 1.37008 1.39997 1.47100 1.51293 1.75800 2.10216 2.36599 2.81429 2.89929 3.05879 3.11035 3.49277 3.77368 3.83386 3.92097 4.07462 4.18322 4.21979 4.23218 4.27469 4.34013 4.39858 4.52763 4.58807 4.61555 4.71115 4.83063 4.88954 4.90511 4.96898 4.97830 5.08731 5.10254 5.27769 5.35682 5.42003 5.46493 5.50378 5.53475 5.63481 5.92188 6.25810 6.73393 6.92960 7.29391 7.52103 8.87538 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.002797 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.782731 B =10009.109686 C =10996.349469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 N -0.736 5.736 4 C 0.701 3.299 5 O -0.636 6.636 6 N -0.625 5.625 7 C 0.113 3.887 8 C 0.108 3.892 9 N -0.996 5.996 10 S 2.618 3.382 11 O -0.989 6.989 12 O -0.984 6.984 13 C -0.607 4.607 14 C -0.103 4.103 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.029 0.971 18 C -0.001 4.001 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.238 1.238 24 C 0.100 3.900 25 C 0.093 3.907 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.410 0.590 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 -26.487 4.854 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.006 3.994 3 N -0.396 5.396 4 C 0.402 3.598 5 O -0.517 6.517 6 N -0.362 5.362 7 C -0.012 4.012 8 C -0.018 4.018 9 N -0.834 5.834 10 S 2.715 3.285 11 O -0.979 6.979 12 O -0.974 6.974 13 C -0.739 4.739 14 C -0.143 4.143 15 C -0.043 4.043 16 C -0.581 4.581 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.188 1.188 22 H -0.214 1.214 23 H -0.161 1.161 24 C -0.026 4.026 25 C -0.032 4.032 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.113 0.887 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.787 -26.584 5.561 31.415 hybrid contribution 0.152 0.641 -1.134 1.312 sum -15.634 -25.943 4.426 30.612 Atomic orbital electron populations 1.21958 0.91825 1.04205 1.03311 1.21221 0.95843 0.81215 1.01164 1.45301 1.04608 1.10078 1.79572 1.16078 0.83296 0.82852 0.77578 1.90891 1.56369 1.44590 1.59887 1.47180 1.07924 1.04187 1.76884 1.21926 0.80310 1.00907 0.98076 1.21913 0.93597 0.87563 0.98733 1.57576 1.14193 1.21804 1.89821 1.04692 0.72946 0.72923 0.77938 1.93532 1.46804 1.85432 1.72146 1.93532 1.55003 1.72637 1.76212 1.30562 1.13140 1.05983 1.24179 1.21170 1.00730 0.92026 1.00326 1.19497 0.97180 0.94124 0.93489 1.21573 1.44116 0.99164 0.93289 0.95259 1.26128 0.94102 0.95644 1.03839 1.70087 1.46937 1.14362 1.27942 0.85587 0.78571 0.80448 0.77604 1.18823 1.21401 1.16109 1.22143 0.79243 1.02245 0.98957 1.22408 0.94029 0.87839 0.98886 0.91077 0.91181 0.89772 0.92976 0.92865 0.75100 0.89491 0.88715 0.87399 0.90439 0.82370 0.82937 0.92162 0.91828 0.95081 0.94900 0.92481 0.89779 0.86722 0.88724 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 10.03 71.98 0.72 0.05 16 2 C 0.13 1.45 6.40 86.38 0.55 2.01 16 3 N -0.74 -8.81 5.47 -478.53 -2.62 -11.42 16 4 C 0.70 13.45 8.29 179.05 1.49 14.94 16 5 O -0.64 -18.07 15.78 -3.98 -0.06 -18.13 16 6 N -0.62 -9.20 2.95 -835.13 -2.46 -11.66 16 7 C 0.11 1.73 6.58 86.41 0.57 2.30 16 8 C 0.11 1.71 6.48 86.41 0.56 2.27 16 9 N -1.00 -16.76 3.19 -511.43 -1.63 -18.39 16 10 S 2.62 64.35 5.42 -56.49 -0.31 64.05 16 11 O -0.99 -31.24 16.70 -127.65 -2.13 -33.38 16 12 O -0.98 -29.56 16.69 -127.65 -2.13 -31.69 16 13 C -0.61 -14.18 6.18 71.98 0.44 -13.73 16 14 C -0.10 -3.73 5.16 30.59 0.16 -3.57 16 15 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 16 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 17 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 18 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 19 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 20 Si 0.96 42.46 27.47 68.60 1.88 44.35 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 24 C 0.10 1.15 6.52 86.57 0.56 1.72 16 25 C 0.09 0.76 6.61 86.57 0.57 1.34 16 26 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.41 2.28 5.92 -92.71 -0.55 1.73 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.72 7.03 -2.38 -0.02 1.71 16 34 H 0.11 1.70 7.06 -2.39 -0.02 1.69 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 41 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 42 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 1.19 7.05 -2.39 -0.02 1.18 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.12 0.27 5.55 -2.39 -0.01 0.25 16 Total: -1.00 -85.92 379.32 -2.33 -88.25 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.37 Total: 10.38 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 6.46 Total: -23.00 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -6.41 Total: -100.82 kcal Atomic # 8 Polarization: -78.87 SS G_CDS: -4.33 Total: -83.20 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.35 kcal Atomic # 16 Polarization: 64.35 SS G_CDS: -0.31 Total: 64.05 kcal Total: -85.92 -2.33 -88.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177731131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.203 kcal (2) G-P(sol) polarization free energy of solvation -85.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds