Wall clock time and date at job start Tue Mar 31 2020 19:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00374 * 2 1 4 4 N 1.34781 * 119.99739 * 179.97438 * 2 1 3 5 5 C 1.40139 * 119.99708 * 185.22079 * 4 2 1 6 6 C 1.39098 * 119.91928 * 34.27027 * 5 4 2 7 7 C 1.37995 * 120.32355 * 180.02562 * 6 5 4 8 8 C 1.38708 * 120.15966 * 359.97438 * 7 6 5 9 9 O 1.35713 * 120.07847 * 180.02562 * 8 7 6 10 10 C 1.40114 * 119.83832 * 0.02562 * 8 7 6 11 11 C 1.47538 * 120.15274 * 179.97438 * 10 8 7 12 12 O 1.21586 * 120.00615 * 45.57685 * 11 10 8 13 13 N 1.34781 * 119.99730 * 225.57475 * 11 10 8 14 14 C 1.46970 * 120.59563 * 185.25909 * 13 11 10 15 15 C 1.53372 * 108.63389 * 235.20894 * 14 13 11 16 16 N 1.46966 * 108.63407 * 310.57313 * 15 14 13 17 17 C 1.36940 * 120.59172 * 235.20847 * 16 15 14 18 18 H 1.07997 * 119.99999 * 30.30287 * 17 16 15 19 19 C 1.38815 * 119.99495 * 210.57953 * 17 16 15 20 20 N 1.31612 * 120.00011 * 8.59591 * 19 17 16 21 21 Si 1.86800 * 119.99560 * 188.59393 * 19 17 16 22 22 H 1.48493 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46918 * 120.00191 * 21 19 17 24 24 H 1.48502 * 109.46885 * 240.00044 * 21 19 17 25 25 C 1.46961 * 118.80997 * 55.48028 * 16 15 14 26 26 C 1.46966 * 120.59347 * 5.23843 * 13 11 10 27 27 C 1.38386 * 119.92316 * 214.54450 * 5 4 2 28 28 H 1.08995 * 109.47197 * 269.99675 * 1 2 3 29 29 H 1.08994 * 109.47161 * 29.99897 * 1 2 3 30 30 H 1.09008 * 109.46906 * 150.00296 * 1 2 3 31 31 H 0.97000 * 120.00145 * 5.22744 * 4 2 1 32 32 H 1.07996 * 119.84448 * 359.97339 * 6 5 4 33 33 H 1.07992 * 119.91914 * 179.97438 * 7 6 5 34 34 H 0.96703 * 114.00029 * 269.97889 * 9 8 7 35 35 H 1.08998 * 109.60641 * 115.45979 * 14 13 11 36 36 H 1.08999 * 109.60738 * 354.95299 * 14 13 11 37 37 H 1.09000 * 109.60172 * 190.83206 * 15 14 13 38 38 H 1.08997 * 109.60950 * 70.32030 * 15 14 13 39 39 H 0.97004 * 119.99989 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.60785 * 64.26912 * 25 16 15 41 41 H 1.09002 * 109.61017 * 184.77820 * 25 16 15 42 42 H 1.08999 * 109.60853 * 244.53945 * 26 13 11 43 43 H 1.09000 * 109.60743 * 5.05243 * 26 13 11 44 44 H 1.08007 * 120.08509 * 0.02563 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5779 -1.1697 0.1110 6 6 4.2143 -0.2062 0.8866 7 6 5.5895 -0.2006 1.0007 8 6 6.3474 -1.1575 0.3421 9 8 7.6997 -1.1507 0.4559 10 6 5.7134 -2.1312 -0.4410 11 6 6.5128 -3.1519 -1.1450 12 8 7.4120 -3.7277 -0.5634 13 7 6.2463 -3.4463 -2.4330 14 6 6.9558 -4.5392 -3.1129 15 6 7.6104 -3.9829 -4.3834 16 7 6.6048 -3.2170 -5.1331 17 6 6.3340 -3.5161 -6.4417 18 1 6.4407 -4.5303 -6.7970 19 6 5.9281 -2.5144 -7.3128 20 7 5.9653 -1.2554 -6.9311 21 14 5.3291 -2.9536 -9.0268 22 1 5.3834 -4.4265 -9.2079 23 1 3.9301 -2.4856 -9.1972 24 1 6.1971 -2.2978 -10.0376 25 6 5.8993 -2.1205 -4.4549 26 6 5.2407 -2.6804 -3.1827 27 6 4.3215 -2.1272 -0.5564 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6989 -2.0056 -0.0756 32 1 3.6293 0.5416 1.4013 33 1 6.0768 0.5508 1.6043 34 1 8.1483 -0.6191 -0.2159 35 1 6.2484 -5.3244 -3.3794 36 1 7.7232 -4.9434 -2.4528 37 1 7.9755 -4.8063 -4.9972 38 1 8.4399 -3.3300 -4.1117 39 1 5.6819 -0.5554 -7.5400 40 1 6.6098 -1.3381 -4.1883 41 1 5.1342 -1.7136 -5.1160 42 1 4.4112 -3.3333 -3.4542 43 1 4.8756 -1.8570 -2.5688 44 1 3.8265 -2.8718 -1.1623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270038082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:00 Heat of formation + Delta-G solvation = -42.813160 kcal Electronic energy + Delta-G solvation = -29219.727448 eV Core-core repulsion = 25138.728675 eV Total energy + Delta-G solvation = -4080.998773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92944 -39.90950 -38.52914 -36.95610 -36.59444 -34.48232 -33.88590 -32.03558 -30.82052 -30.73697 -29.98945 -28.16592 -26.98002 -24.49041 -23.31909 -23.06203 -22.39723 -21.35251 -20.28469 -19.12651 -18.29730 -17.76615 -17.49845 -16.60895 -16.13894 -15.91564 -15.65853 -15.46143 -14.97908 -14.83827 -14.36422 -14.26130 -13.94038 -13.67655 -13.50210 -13.34916 -13.23424 -13.13526 -12.88606 -12.73658 -12.43403 -12.39160 -12.06179 -11.60389 -11.26302 -10.92632 -10.73940 -10.72207 -10.53288 -10.46443 -10.25329 -10.15127 -10.05901 -9.88916 -9.48633 -8.95839 -8.62832 -8.29067 -8.13722 -6.71169 -5.87273 -3.37922 0.88140 1.04592 2.27575 2.71717 3.02537 3.30102 3.35287 3.38472 3.40334 3.64853 4.21317 4.38138 4.40002 4.64316 4.71586 4.83861 5.00187 5.06753 5.23696 5.27119 5.30019 5.32199 5.49042 5.65306 5.77632 5.83711 5.85269 5.92592 6.01712 6.08830 6.15746 6.19704 6.25954 6.35856 6.42389 6.65240 6.76883 6.92048 7.07535 7.21328 7.51978 7.67187 7.67910 7.81391 7.87521 8.35310 8.52892 9.10258 9.70630 10.28098 11.18973 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.003917 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.855192 B = 7146.782732 C = 8947.829830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.510 3.490 3 O -0.525 6.525 4 N -0.673 5.673 5 C 0.127 3.873 6 C -0.086 4.086 7 C -0.133 4.133 8 C 0.144 3.856 9 O -0.483 6.483 10 C -0.127 4.127 11 C 0.554 3.446 12 O -0.536 6.536 13 N -0.591 5.591 14 C 0.096 3.904 15 C 0.131 3.869 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.157 3.843 26 C 0.073 3.927 27 C -0.094 4.094 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.412 0.588 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.392 0.608 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.021 0.979 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.155 0.827 15.002 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.299 3.701 3 O -0.401 6.401 4 N -0.319 5.319 5 C 0.033 3.967 6 C -0.106 4.106 7 C -0.152 4.152 8 C 0.097 3.903 9 O -0.293 6.293 10 C -0.131 4.131 11 C 0.341 3.659 12 O -0.414 6.414 13 N -0.323 5.323 14 C -0.028 4.028 15 C 0.004 3.996 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.552 5.552 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.030 3.970 26 C -0.051 4.051 27 C -0.115 4.115 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.249 0.751 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.456 1.059 15.643 18.309 hybrid contribution -0.526 -0.211 -1.489 1.593 sum -9.982 0.848 14.154 17.341 Atomic orbital electron populations 1.21890 0.90613 1.05504 1.05051 1.21025 0.90928 0.83090 0.75086 1.90763 1.70522 1.31181 1.47586 1.43662 1.04976 1.10058 1.73236 1.17521 0.82898 0.98121 0.98126 1.21053 0.94156 0.98403 0.97033 1.21247 0.93506 0.98842 1.01617 1.18383 0.83864 0.93161 0.94901 1.84808 1.14504 1.73920 1.56064 1.20134 0.93537 0.98895 1.00519 1.18055 0.83515 0.82582 0.81739 1.90767 1.31077 1.52830 1.66738 1.48019 1.40141 1.34162 1.09966 1.22228 0.96658 0.88480 0.95400 1.21308 0.91391 0.95637 0.91244 1.44008 1.41166 1.37088 1.09284 1.19287 1.41190 0.92916 0.84836 0.91415 1.25175 1.01333 0.95049 0.97943 1.69911 1.51036 0.98597 1.35612 0.86143 0.78105 0.77881 0.84179 1.20202 1.21536 1.21557 1.21379 0.96790 0.89117 0.89695 1.23024 0.91000 0.95143 0.95971 1.20994 0.92199 0.99999 0.98348 0.88482 0.88385 0.89781 0.75131 0.84318 0.84454 0.75099 0.91866 0.89898 0.91497 0.95812 0.93448 0.96085 0.87330 0.91955 0.90542 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.31 36.01 0.37 -0.49 16 2 C 0.51 4.92 7.67 -10.98 -0.08 4.84 16 3 O -0.53 -7.39 14.84 5.55 0.08 -7.30 16 4 N -0.67 -5.95 5.34 -9.87 -0.05 -6.00 16 5 C 0.13 1.51 6.25 -83.68 -0.52 0.99 16 6 C -0.09 -1.07 8.64 -39.35 -0.34 -1.41 16 7 C -0.13 -1.67 9.97 -39.50 -0.39 -2.07 16 8 C 0.14 2.12 6.69 -38.70 -0.26 1.86 16 9 O -0.48 -7.17 12.43 -31.41 -0.39 -7.56 16 10 C -0.13 -1.98 4.98 -104.87 -0.52 -2.50 16 11 C 0.55 10.20 7.02 -12.47 -0.09 10.11 16 12 O -0.54 -11.41 15.78 -7.28 -0.11 -11.53 16 13 N -0.59 -10.81 2.95 -173.43 -0.51 -11.32 16 14 C 0.10 1.77 6.60 -3.59 -0.02 1.75 16 15 C 0.13 2.74 6.67 -3.60 -0.02 2.71 16 16 N -0.59 -14.33 2.97 -171.77 -0.51 -14.84 16 17 C -0.25 -6.64 9.60 -15.06 -0.14 -6.78 16 18 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 19 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 20 N -0.91 -25.28 10.81 55.49 0.60 -24.68 16 21 Si 0.91 20.89 29.56 -169.99 -5.03 15.86 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.16 3.58 5.50 -3.37 -0.02 3.56 16 26 C 0.07 1.31 5.31 -3.36 -0.02 1.29 16 27 C -0.09 -1.23 7.33 -38.99 -0.29 -1.52 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.41 2.24 8.82 -40.82 -0.36 1.88 16 32 H 0.14 1.68 6.46 -52.49 -0.34 1.34 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.39 4.34 9.06 45.56 0.41 4.75 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 37 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.11 2.75 5.84 -51.93 -0.30 2.45 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.26 4.86 -51.93 -0.25 1.01 16 44 H 0.14 1.60 7.04 -52.48 -0.37 1.23 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -35.23 361.86 -7.83 -43.05 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.92 Total: 6.53 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -2.44 Total: 12.34 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.47 Total: -56.84 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.42 Total: -26.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.23 -7.83 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270038082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.242 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds