Wall clock time and date at job start Tue Mar 31 2020 19:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00374 * 2 1 4 4 N 1.34781 * 119.99739 * 179.97438 * 2 1 3 5 5 C 1.40139 * 119.99708 * 185.22079 * 4 2 1 6 6 C 1.39098 * 119.91928 * 34.27027 * 5 4 2 7 7 C 1.37995 * 120.32355 * 180.02562 * 6 5 4 8 8 C 1.38708 * 120.15966 * 359.97438 * 7 6 5 9 9 O 1.35713 * 120.07847 * 180.02562 * 8 7 6 10 10 C 1.40114 * 119.83832 * 0.02562 * 8 7 6 11 11 C 1.47538 * 120.15274 * 179.97438 * 10 8 7 12 12 O 1.21586 * 120.00615 * 45.57685 * 11 10 8 13 13 N 1.34781 * 119.99730 * 225.57475 * 11 10 8 14 14 C 1.46970 * 120.59563 * 185.25909 * 13 11 10 15 15 C 1.53372 * 108.63389 * 235.20894 * 14 13 11 16 16 N 1.46966 * 108.63407 * 310.57313 * 15 14 13 17 17 C 1.36940 * 120.59172 * 235.20847 * 16 15 14 18 18 H 1.07997 * 119.99999 * 30.30287 * 17 16 15 19 19 C 1.38815 * 119.99495 * 210.57953 * 17 16 15 20 20 N 1.31612 * 120.00011 * 8.59591 * 19 17 16 21 21 Si 1.86800 * 119.99560 * 188.59393 * 19 17 16 22 22 H 1.48493 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46918 * 120.00191 * 21 19 17 24 24 H 1.48502 * 109.46885 * 240.00044 * 21 19 17 25 25 C 1.46961 * 118.80997 * 55.48028 * 16 15 14 26 26 C 1.46966 * 120.59347 * 5.23843 * 13 11 10 27 27 C 1.38386 * 119.92316 * 214.54450 * 5 4 2 28 28 H 1.08995 * 109.47197 * 269.99675 * 1 2 3 29 29 H 1.08994 * 109.47161 * 29.99897 * 1 2 3 30 30 H 1.09008 * 109.46906 * 150.00296 * 1 2 3 31 31 H 0.97000 * 120.00145 * 5.22744 * 4 2 1 32 32 H 1.07996 * 119.84448 * 359.97339 * 6 5 4 33 33 H 1.07992 * 119.91914 * 179.97438 * 7 6 5 34 34 H 0.96703 * 114.00029 * 269.97889 * 9 8 7 35 35 H 1.08998 * 109.60641 * 115.45979 * 14 13 11 36 36 H 1.08999 * 109.60738 * 354.95299 * 14 13 11 37 37 H 1.09000 * 109.60172 * 190.83206 * 15 14 13 38 38 H 1.08997 * 109.60950 * 70.32030 * 15 14 13 39 39 H 0.97004 * 119.99989 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.60785 * 64.26912 * 25 16 15 41 41 H 1.09002 * 109.61017 * 184.77820 * 25 16 15 42 42 H 1.08999 * 109.60853 * 244.53945 * 26 13 11 43 43 H 1.09000 * 109.60743 * 5.05243 * 26 13 11 44 44 H 1.08007 * 120.08509 * 0.02563 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5779 -1.1697 0.1110 6 6 4.2143 -0.2062 0.8866 7 6 5.5895 -0.2006 1.0007 8 6 6.3474 -1.1575 0.3421 9 8 7.6997 -1.1507 0.4559 10 6 5.7134 -2.1312 -0.4410 11 6 6.5128 -3.1519 -1.1450 12 8 7.4120 -3.7277 -0.5634 13 7 6.2463 -3.4463 -2.4330 14 6 6.9558 -4.5392 -3.1129 15 6 7.6104 -3.9829 -4.3834 16 7 6.6048 -3.2170 -5.1331 17 6 6.3340 -3.5161 -6.4417 18 1 6.4407 -4.5303 -6.7970 19 6 5.9281 -2.5144 -7.3128 20 7 5.9653 -1.2554 -6.9311 21 14 5.3291 -2.9536 -9.0268 22 1 5.3834 -4.4265 -9.2079 23 1 3.9301 -2.4856 -9.1972 24 1 6.1971 -2.2978 -10.0376 25 6 5.8993 -2.1205 -4.4549 26 6 5.2407 -2.6804 -3.1827 27 6 4.3215 -2.1272 -0.5564 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6989 -2.0056 -0.0756 32 1 3.6293 0.5416 1.4013 33 1 6.0768 0.5508 1.6043 34 1 8.1483 -0.6191 -0.2159 35 1 6.2484 -5.3244 -3.3794 36 1 7.7232 -4.9434 -2.4528 37 1 7.9755 -4.8063 -4.9972 38 1 8.4399 -3.3300 -4.1117 39 1 5.6819 -0.5554 -7.5400 40 1 6.6098 -1.3381 -4.1883 41 1 5.1342 -1.7136 -5.1160 42 1 4.4112 -3.3333 -3.4542 43 1 4.8756 -1.8570 -2.5688 44 1 3.8265 -2.8718 -1.1623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270038082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:57 Heat of formation + Delta-G solvation = -68.397404 kcal Electronic energy + Delta-G solvation = -29220.836865 eV Core-core repulsion = 25138.728675 eV Total energy + Delta-G solvation = -4082.108190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -41.98579 -41.02814 -39.75850 -38.36727 -37.86964 -35.68719 -35.32407 -33.56772 -32.38648 -31.55481 -31.40422 -29.07933 -28.63833 -26.01605 -24.84037 -24.46852 -23.51418 -22.57917 -21.54488 -20.50143 -19.42212 -19.12883 -18.44146 -18.02815 -17.47577 -17.09063 -16.89037 -16.67941 -16.51796 -16.05311 -15.74816 -15.45894 -15.23772 -15.14838 -15.07889 -14.80734 -14.61121 -14.09694 -13.97369 -13.77984 -13.39793 -13.27098 -13.20971 -13.01884 -12.89893 -12.74977 -12.46505 -12.21436 -12.05152 -11.93954 -11.81713 -11.69254 -11.37402 -11.10469 -10.83993 -10.62471 -10.06249 -9.86071 -9.12581 -8.64325 -7.87354 -5.42132 -0.21447 0.05126 1.46213 1.48398 1.50630 1.60370 1.64997 1.90655 2.13776 2.49679 2.55779 3.17224 3.28394 3.37001 3.58520 3.69227 3.85149 4.03848 4.18059 4.22605 4.25308 4.34276 4.37527 4.53176 4.56302 4.57741 4.69634 4.70927 4.76624 4.79926 4.84240 5.04597 5.06696 5.12424 5.20167 5.23436 5.27532 5.52318 5.61098 5.66148 5.72317 6.36660 6.39169 6.41501 6.68697 7.07295 7.11131 7.11331 7.76832 8.30931 9.16464 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.003917 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.855192 B = 7146.782732 C = 8947.829830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.575 6.575 4 N -0.661 5.661 5 C 0.131 3.869 6 C -0.087 4.087 7 C -0.128 4.128 8 C 0.129 3.871 9 O -0.499 6.499 10 C -0.151 4.151 11 C 0.558 3.442 12 O -0.569 6.569 13 N -0.593 5.593 14 C 0.105 3.895 15 C 0.132 3.868 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.072 0.928 19 C -0.046 4.046 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.296 1.296 25 C 0.163 3.837 26 C 0.093 3.907 27 C -0.092 4.092 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.431 0.569 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.007 0.993 39 H 0.251 0.749 40 H -0.009 1.009 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 -0.027 15.576 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.297 3.703 3 O -0.454 6.454 4 N -0.309 5.309 5 C 0.036 3.964 6 C -0.107 4.107 7 C -0.147 4.147 8 C 0.082 3.918 9 O -0.311 6.311 10 C -0.155 4.155 11 C 0.347 3.653 12 O -0.449 6.449 13 N -0.324 5.324 14 C -0.018 4.018 15 C 0.005 3.995 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.090 0.910 19 C -0.241 4.241 20 N -0.584 5.584 21 Si 0.800 3.200 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.223 1.223 25 C 0.037 3.963 26 C -0.030 4.030 27 C -0.113 4.113 28 H 0.137 0.863 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.271 0.729 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.009 0.991 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.808 0.157 16.226 20.068 hybrid contribution 0.225 0.094 -1.621 1.639 sum -11.583 0.250 14.605 18.642 Atomic orbital electron populations 1.21935 0.86695 1.06731 1.06779 1.21921 0.92691 0.82237 0.73468 1.90746 1.71803 1.32906 1.49900 1.43685 1.03691 1.11109 1.72435 1.17595 0.84466 0.97190 0.97108 1.21238 0.94183 0.98437 0.96883 1.21417 0.93579 0.98578 1.01117 1.18587 0.83913 0.93807 0.95488 1.84764 1.14979 1.74507 1.56828 1.20065 0.94494 0.99131 1.01810 1.18422 0.83046 0.82404 0.81455 1.90740 1.32671 1.54125 1.67405 1.48046 1.40147 1.34085 1.10152 1.22087 0.97035 0.88694 0.94022 1.21374 0.90550 0.95258 0.92290 1.44256 1.42237 1.37426 1.09293 1.19613 1.40585 0.93161 0.85839 0.90988 1.25897 1.01946 0.94922 1.01361 1.70086 1.52244 0.99435 1.36613 0.85139 0.77179 0.78043 0.79665 1.18945 1.21387 1.22301 1.21171 0.95473 0.88515 0.91186 1.22757 0.90590 0.95869 0.93827 1.21057 0.91176 1.00529 0.98493 0.86334 0.88687 0.87006 0.72938 0.83864 0.82473 0.73752 0.90331 0.89537 0.90543 0.97515 0.93922 0.99091 0.89799 0.90387 0.88719 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.31 71.24 0.73 -0.37 16 2 C 0.51 8.60 7.67 87.66 0.67 9.27 16 3 O -0.57 -15.50 14.84 -3.04 -0.05 -15.55 16 4 N -0.66 -9.90 5.34 -303.52 -1.62 -11.52 16 5 C 0.13 2.87 6.25 38.05 0.24 3.11 16 6 C -0.09 -2.04 8.64 22.42 0.19 -1.85 16 7 C -0.13 -3.08 9.97 22.32 0.22 -2.86 16 8 C 0.13 3.74 6.69 22.84 0.15 3.90 16 9 O -0.50 -14.90 12.43 -78.33 -0.97 -15.88 16 10 C -0.15 -4.61 4.98 -20.02 -0.10 -4.71 16 11 C 0.56 20.29 7.02 86.70 0.61 20.90 16 12 O -0.57 -24.26 15.78 8.03 0.13 -24.14 16 13 N -0.59 -21.24 2.95 -820.88 -2.42 -23.66 16 14 C 0.11 3.78 6.60 86.41 0.57 4.35 16 15 C 0.13 5.49 6.67 86.42 0.58 6.07 16 16 N -0.61 -29.59 2.97 -697.35 -2.07 -31.66 16 17 C -0.26 -13.73 9.60 84.03 0.81 -12.92 16 18 H 0.07 3.64 7.84 -2.91 -0.02 3.62 16 19 C -0.05 -2.45 5.11 84.86 0.43 -2.02 16 20 N -0.94 -53.23 10.81 21.65 0.23 -52.99 16 21 Si 0.97 42.86 29.56 68.60 2.03 44.89 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 25 C 0.16 7.55 5.50 86.57 0.48 8.03 16 26 C 0.09 3.28 5.31 86.56 0.46 3.74 16 27 C -0.09 -2.22 7.33 22.65 0.17 -2.06 16 28 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.43 3.16 8.82 -92.71 -0.82 2.34 16 32 H 0.14 3.27 6.46 -2.91 -0.02 3.25 16 33 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.40 9.18 9.06 -74.06 -0.67 8.51 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.09 3.07 6.99 -2.39 -0.02 3.06 16 37 H 0.08 2.99 7.93 -2.39 -0.02 2.97 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.08 4.34 5.84 -2.39 -0.01 4.32 16 42 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.09 3.01 4.86 -2.39 -0.01 3.00 16 44 H 0.15 3.15 7.04 -2.91 -0.02 3.13 16 Total: -1.00 -77.28 361.86 1.05 -76.23 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.42 Total: 21.69 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 6.21 Total: 32.59 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -5.87 Total: -119.83 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.89 Total: -55.56 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -77.28 1.05 -76.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270038082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.830 kcal (2) G-P(sol) polarization free energy of solvation -77.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds