Wall clock time and date at job start Tue Mar 31 2020 18:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.47686 * 2 1 4 4 C 1.34766 * 117.00235 * 179.97438 * 3 2 1 5 5 O 1.21528 * 120.00152 * 0.02562 * 4 3 2 6 6 C 1.47245 * 119.99857 * 179.97438 * 4 3 2 7 7 C 1.41355 * 126.47654 * 0.05433 * 6 4 3 8 8 C 1.36325 * 107.00455 * 179.97438 * 7 6 4 9 9 C 1.46827 * 125.83890 * 179.97438 * 8 7 6 10 10 O 1.21673 * 120.00122 * 348.84029 * 9 8 7 11 11 N 1.34773 * 119.99849 * 168.84137 * 9 8 7 12 12 C 1.46505 * 120.00202 * 2.15625 * 11 9 8 13 13 C 1.50699 * 109.47161 * 82.25450 * 12 11 9 14 14 H 1.07996 * 119.99689 * 0.02562 * 13 12 11 15 15 C 1.37868 * 119.99948 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99932 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46932 * 120.00420 * 17 15 13 20 20 H 1.48501 * 109.46960 * 240.00199 * 17 15 13 21 21 C 1.46502 * 119.99987 * 182.15829 * 11 9 8 22 22 C 1.53004 * 109.47244 * 85.15872 * 21 11 9 23 23 C 1.47195 * 109.47102 * 180.02562 * 22 21 11 24 24 N 9.09473 * 122.66133 * 193.37672 * 6 1 2 25 25 N 1.37789 * 108.32368 * 359.77361 * 8 7 6 26 26 H 0.96991 * 125.38684 * 180.22721 * 25 8 7 27 27 C 1.34233 * 109.23123 * 0.37351 * 25 8 7 28 28 C 1.50695 * 125.80336 * 179.89578 * 27 25 8 29 29 H 1.09002 * 109.47216 * 300.00273 * 1 2 3 30 30 H 1.08998 * 109.46795 * 59.99815 * 1 2 3 31 31 H 1.08991 * 109.47514 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47216 * 239.99727 * 2 1 3 33 33 H 1.09004 * 109.47187 * 120.00125 * 2 1 3 34 34 H 1.08007 * 126.49983 * 359.97145 * 7 6 4 35 35 H 1.08997 * 109.47093 * 202.25868 * 12 11 9 36 36 H 1.09001 * 109.46709 * 322.25505 * 12 11 9 37 37 H 0.97002 * 119.99787 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.47027 * 205.16028 * 21 11 9 39 39 H 1.09003 * 109.46904 * 325.16001 * 21 11 9 40 40 H 1.09001 * 109.47192 * 300.00391 * 22 21 11 41 41 H 1.08991 * 109.46712 * 60.00024 * 22 21 11 42 42 H 1.09004 * 109.46778 * 269.68516 * 28 27 25 43 43 H 1.08999 * 109.46971 * 149.69374 * 28 27 25 44 44 H 1.08994 * 109.47380 * 29.69055 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3501 1.5454 0.0005 5 8 4.0904 0.5816 0.0005 6 6 3.9130 2.9060 0.0000 7 6 3.1839 4.1170 0.0000 8 6 4.0951 5.1310 0.0000 9 6 3.7844 6.5660 -0.0005 10 8 2.6454 6.9418 -0.2049 11 7 4.7610 7.4670 0.2254 12 6 6.1409 7.0171 0.4246 13 6 6.7895 6.7776 -0.9145 14 1 6.2298 6.9443 -1.8230 15 6 8.0975 6.3468 -0.9797 16 7 8.7791 6.1444 0.1267 17 14 8.9016 6.0507 -2.6396 18 1 7.9291 6.3498 -3.7212 19 1 10.0859 6.9354 -2.7807 20 1 9.3293 4.6319 -2.7363 21 6 4.4425 8.8962 0.2718 22 6 3.9783 9.2698 1.6811 23 6 3.6578 10.7057 1.7275 24 7 3.4122 11.8125 1.7714 25 7 5.3575 4.5789 0.0052 26 1 6.1890 5.0783 0.0094 27 6 5.2548 3.2405 0.0001 28 6 6.4060 2.2680 0.0010 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1087 4.2196 0.0000 35 1 6.6977 7.7816 0.9665 36 1 6.1417 6.0910 0.9995 37 1 9.6993 5.8409 0.0807 38 1 5.3303 9.4747 0.0165 39 1 3.6485 9.1149 -0.4422 40 1 3.0905 8.6912 1.9365 41 1 4.7723 9.0510 2.3950 42 1 6.6836 2.0328 -1.0265 43 1 6.1090 1.3540 0.5153 44 1 7.2577 2.7136 0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294564607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:24 Heat of formation + Delta-G solvation = -49.088595 kcal Electronic energy + Delta-G solvation = -28683.404209 eV Core-core repulsion = 24602.133312 eV Total energy + Delta-G solvation = -4081.270897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.36496 -39.78496 -38.78808 -36.73620 -36.22307 -35.60661 -33.45148 -31.96829 -31.74676 -31.05846 -30.40958 -27.74664 -26.73371 -24.75167 -23.64126 -23.41815 -22.10420 -20.78127 -19.51235 -19.25980 -17.72109 -17.33539 -16.95417 -16.62840 -16.32422 -15.83129 -15.29194 -15.21156 -14.85826 -14.80649 -14.34247 -14.20088 -13.70284 -13.42901 -13.25992 -13.13312 -12.88643 -12.83804 -12.74326 -12.48192 -12.41319 -12.30552 -12.07981 -11.87291 -11.81243 -11.64579 -11.50336 -11.37251 -11.27265 -11.04048 -10.79557 -10.51020 -10.40366 -10.16524 -10.11306 -9.55681 -9.06475 -8.68524 -8.23586 -7.74372 -6.66871 -4.81153 1.86547 2.03005 2.79301 2.88758 2.90185 2.97290 3.08803 3.12981 3.43336 3.51131 3.78327 3.91930 4.02866 4.27903 4.64920 4.90598 4.93780 5.01471 5.14675 5.20263 5.22170 5.23794 5.36481 5.50927 5.56778 5.68786 5.72415 5.81209 5.90647 5.91303 5.93499 6.10287 6.19261 6.21049 6.26016 6.35754 6.60523 6.73105 6.97737 7.04387 7.28250 7.33080 7.47041 7.63675 7.87622 8.00896 8.19280 8.34995 8.66122 8.91687 10.35652 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008717 B = 0.004234 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.363149 B = 6612.191203 C = 9261.970527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.354 6.354 4 C 0.546 3.454 5 O -0.528 6.528 6 C -0.248 4.248 7 C -0.069 4.069 8 C -0.046 4.046 9 C 0.593 3.407 10 O -0.552 6.552 11 N -0.598 5.598 12 C 0.215 3.785 13 C -0.566 4.566 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.879 5.879 17 Si 0.897 3.103 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.129 3.871 22 C -0.047 4.047 23 C 0.221 3.779 24 N -0.448 5.448 25 N -0.494 5.494 26 H 0.456 0.544 27 C 0.131 3.869 28 C -0.099 4.099 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.153 0.847 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.275 0.725 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 -8.178 2.207 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.394 3.606 5 O -0.419 6.419 6 C -0.255 4.255 7 C -0.094 4.094 8 C -0.158 4.158 9 C 0.382 3.618 10 O -0.432 6.432 11 N -0.328 5.328 12 C 0.095 3.905 13 C -0.604 4.604 14 H 0.092 0.908 15 C -0.139 4.139 16 N -0.515 5.515 17 Si 0.723 3.277 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.201 1.201 21 C 0.003 3.997 22 C -0.089 4.089 23 C -0.097 4.097 24 N -0.125 5.125 25 N -0.104 5.104 26 H 0.316 0.684 27 C 0.002 3.998 28 C -0.157 4.157 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.096 -6.453 2.256 9.853 hybrid contribution 1.184 -0.528 -0.873 1.563 sum -5.913 -6.981 1.383 9.252 Atomic orbital electron populations 1.21793 0.92961 1.02575 1.03593 1.22923 0.95050 0.80792 1.02293 1.86584 1.24367 1.31414 1.84755 1.20189 0.79895 0.88792 0.71765 1.90757 1.60194 1.42554 1.48436 1.18241 0.92175 0.90219 1.24891 1.21042 0.99018 0.89183 1.00188 1.19915 0.84620 0.93231 1.18022 1.17082 0.84493 0.83916 0.76279 1.90760 1.20769 1.80080 1.51545 1.48018 1.09913 1.05146 1.69697 1.19879 0.76391 0.96840 0.97432 1.21708 0.97841 1.47718 0.93154 0.90833 1.25078 0.96633 0.94399 0.97766 1.69918 1.11214 1.43373 1.26963 0.86399 0.79672 0.78553 0.83075 1.19135 1.20182 1.20133 1.21154 1.02300 0.82211 0.93994 1.19788 1.04601 0.82967 1.01495 1.28997 0.92772 0.94942 0.92994 1.81129 1.09693 1.12926 1.08775 1.44193 1.11083 1.05651 1.49488 0.68351 1.20881 0.94914 0.85110 0.98922 1.20625 0.93928 0.97387 1.03727 0.91493 0.91476 0.90582 0.91513 0.91509 0.82937 0.92807 0.94421 0.91525 0.89091 0.89704 0.86996 0.87069 0.90203 0.88494 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.71 6.20 37.16 0.23 0.94 16 3 O -0.35 -5.22 10.07 -40.67 -0.41 -5.63 16 4 C 0.55 9.12 7.95 34.39 0.27 9.39 16 5 O -0.53 -9.31 14.58 -19.29 -0.28 -9.59 16 6 C -0.25 -4.34 6.13 -105.03 -0.64 -4.98 16 7 C -0.07 -1.22 10.42 -39.09 -0.41 -1.63 16 8 C -0.05 -0.86 6.57 -82.40 -0.54 -1.40 16 9 C 0.59 11.25 7.53 -12.79 -0.10 11.16 16 10 O -0.55 -11.14 16.52 5.21 0.09 -11.06 16 11 N -0.60 -10.49 2.49 -176.55 -0.44 -10.93 16 12 C 0.22 4.18 4.70 -5.19 -0.02 4.16 16 13 C -0.57 -12.31 7.29 -34.44 -0.25 -12.57 16 14 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.07 1.50 5.06 -17.82 -0.09 1.41 16 16 N -0.88 -20.01 13.29 55.43 0.74 -19.27 16 17 Si 0.90 18.06 29.54 -169.99 -5.02 13.04 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 C 0.13 1.87 5.30 -4.04 -0.02 1.85 16 22 C -0.05 -0.56 5.99 -29.52 -0.18 -0.74 16 23 C 0.22 2.98 15.43 -20.81 -0.32 2.66 16 24 N -0.45 -7.12 18.53 42.10 0.78 -6.34 16 25 N -0.49 -9.32 4.70 -5.60 -0.03 -9.34 16 26 H 0.46 9.07 3.23 -40.82 -0.13 8.94 16 27 C 0.13 2.31 7.21 -81.53 -0.59 1.72 16 28 C -0.10 -1.53 9.88 36.00 0.36 -1.17 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.15 2.49 8.06 -52.48 -0.42 2.06 16 35 H 0.05 1.06 8.01 -51.93 -0.42 0.64 16 36 H 0.04 0.77 5.16 -51.93 -0.27 0.50 16 37 H 0.27 6.01 8.31 -40.82 -0.34 5.67 16 38 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 39 H 0.08 1.28 7.54 -51.93 -0.39 0.89 16 40 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 1.45 6.46 -51.93 -0.34 1.11 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -26.52 382.87 -6.46 -32.98 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.73 Total: 10.45 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -1.92 Total: 9.92 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 1.05 Total: -45.89 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.60 Total: -26.28 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -26.52 -6.46 -32.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294564607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.111 kcal (2) G-P(sol) polarization free energy of solvation -26.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds