Wall clock time and date at job start Tue Mar 31 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47197 * 2 1 4 4 C 1.46497 * 119.99672 * 274.99602 * 3 2 1 5 5 C 1.50704 * 109.47328 * 296.94785 * 4 3 2 6 6 H 1.08000 * 119.99694 * 5.79066 * 5 4 3 7 7 C 1.37872 * 120.00403 * 185.79272 * 5 4 3 8 8 N 1.31525 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00460 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46843 * 59.99992 * 9 7 5 11 11 H 1.48500 * 109.47220 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47022 * 300.00298 * 9 7 5 13 13 S 1.65596 * 120.00222 * 94.99604 * 3 2 1 14 14 O 1.42099 * 106.40364 * 340.10972 * 13 3 2 15 15 O 1.42096 * 106.40375 * 207.18624 * 13 3 2 16 16 N 1.65603 * 107.21747 * 93.64666 * 13 3 2 17 17 C 1.47273 * 121.35166 * 94.82106 * 16 13 3 18 18 C 1.52987 * 108.18528 * 118.52073 * 17 16 13 19 19 N 1.45640 * 110.77785 * 46.72637 * 18 17 16 20 20 C 1.33386 * 124.58961 * 338.09972 * 19 18 17 21 21 O 1.21278 * 118.49147 * 184.34301 * 20 19 18 22 22 C 1.47051 * 121.35710 * 274.84442 * 16 13 3 23 23 H 1.08999 * 109.56432 * 102.89058 * 22 16 13 24 24 C 1.52997 * 109.56461 * 342.53854 * 22 16 13 25 25 C 1.53008 * 109.46911 * 176.19195 * 24 22 16 26 26 C 1.52993 * 109.47432 * 296.19302 * 24 22 16 27 27 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47546 * 300.00684 * 1 2 3 29 29 H 1.09000 * 109.46941 * 60.00251 * 1 2 3 30 30 H 1.09001 * 109.47062 * 239.99106 * 2 1 3 31 31 H 1.08998 * 109.46508 * 120.00052 * 2 1 3 32 32 H 1.09001 * 109.47212 * 56.94772 * 4 3 2 33 33 H 1.09000 * 109.47436 * 176.94809 * 4 3 2 34 34 H 0.96993 * 119.99734 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.71634 * 358.84372 * 17 16 13 36 36 H 1.09000 * 109.72051 * 238.19286 * 17 16 13 37 37 H 1.08999 * 109.21649 * 286.38881 * 18 17 16 38 38 H 1.09002 * 109.17646 * 167.03674 * 18 17 16 39 39 H 0.96997 * 117.71235 * 158.07477 * 19 18 17 40 40 H 1.09001 * 109.47336 * 56.19830 * 24 22 16 41 41 H 1.08993 * 109.46784 * 76.74795 * 25 24 22 42 42 H 1.09000 * 109.46753 * 196.73981 * 25 24 22 43 43 H 1.09001 * 109.46763 * 316.74097 * 25 24 22 44 44 H 1.08997 * 109.47012 * 42.29629 * 26 24 22 45 45 H 1.08995 * 109.47818 * 162.29616 * 26 24 22 46 46 H 1.09003 * 109.46886 * 282.30283 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.1836 1.4210 -2.1284 6 1 3.6126 0.4812 -1.8134 7 6 3.5740 1.9916 -3.3212 8 7 3.0520 3.1364 -3.7044 9 14 4.8454 1.1398 -4.3923 10 1 4.3437 -0.2020 -4.7838 11 1 5.0903 1.9522 -5.6110 12 1 6.1132 0.9922 -3.6333 13 16 2.4121 2.1202 1.4286 14 8 1.7546 1.3882 2.4537 15 8 2.2229 3.5138 1.2251 16 7 4.0363 1.8984 1.6639 17 6 5.0168 2.9153 1.2475 18 6 5.7601 3.4003 2.4936 19 7 6.1865 2.2736 3.3121 20 6 5.6377 1.0585 3.2727 21 8 6.0267 0.2222 4.0602 22 6 4.5581 0.6778 2.2966 23 1 4.9719 0.0192 1.5331 24 6 3.4274 -0.0390 3.0371 25 6 3.9503 -1.3560 3.6143 26 6 2.9183 0.8495 4.1738 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.1992 2.1255 -1.7816 33 1 2.4801 3.1302 -1.0616 34 1 3.3269 3.5381 -4.5434 35 1 4.5011 3.7527 0.7776 36 1 5.7249 2.4772 0.5441 37 1 5.0996 4.0396 3.0793 38 1 6.6356 3.9733 2.1880 39 1 6.9212 2.4167 3.9290 40 1 2.6120 -0.2447 2.3436 41 1 4.5420 -1.1520 4.5066 42 1 3.1088 -1.9978 3.8753 43 1 4.5724 -1.8563 2.8722 44 1 2.8423 1.8790 3.8240 45 1 1.9366 0.5017 4.4952 46 1 3.6134 0.8010 5.0120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337054027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:15 Heat of formation + Delta-G solvation = -71.499951 kcal Electronic energy + Delta-G solvation = -30379.755573 eV Core-core repulsion = 26432.956798 eV Total energy + Delta-G solvation = -3946.798775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.58692 -37.63396 -36.75814 -36.13334 -35.64954 -35.12052 -32.76644 -32.63392 -29.96276 -29.46666 -27.06821 -26.66774 -25.92017 -23.86348 -23.26834 -21.64191 -21.04771 -19.65614 -18.25282 -17.55175 -17.17588 -16.91063 -16.50112 -16.29441 -15.73882 -15.51013 -15.04793 -14.50190 -14.36791 -14.06662 -13.93238 -13.60883 -13.26918 -12.92308 -12.84997 -12.62119 -12.39806 -12.21543 -12.02632 -11.99556 -11.83963 -11.80458 -11.56680 -11.32270 -11.16341 -11.03699 -10.95510 -10.76738 -10.71555 -10.45777 -10.35102 -10.23904 -9.87748 -9.81507 -9.47633 -9.16419 -8.78781 -8.60159 -8.09157 -6.18984 -4.25643 1.05802 2.64187 3.07985 3.19922 3.26624 3.27495 3.38811 3.94240 4.29182 4.45632 4.63982 4.69891 4.90236 5.05592 5.14228 5.17051 5.23047 5.34034 5.42177 5.52933 5.67203 5.72516 5.79013 5.90056 5.95676 5.99785 6.03922 6.14083 6.19666 6.26223 6.31155 6.39030 6.50998 6.61410 6.69404 6.71938 6.76322 6.79977 7.27293 7.28814 7.32494 7.53279 7.78061 8.09110 8.21887 8.79094 9.40485 10.89024 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.005756 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.719665 B = 4863.606350 C = 5564.850259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 N -0.988 5.988 4 C 0.248 3.752 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 S 2.771 3.229 14 O -0.974 6.974 15 O -0.979 6.979 16 N -1.004 6.004 17 C 0.108 3.892 18 C 0.097 3.903 19 N -0.717 5.717 20 C 0.526 3.474 21 O -0.545 6.545 22 C 0.148 3.852 23 H 0.104 0.896 24 C -0.107 4.107 25 C -0.144 4.144 26 C -0.098 4.098 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.050 0.950 34 H 0.266 0.734 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.396 0.604 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -2.687 10.911 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.002 4.002 3 N -0.830 5.830 4 C 0.126 3.874 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.783 3.217 14 O -0.958 6.958 15 O -0.963 6.963 16 N -0.842 5.842 17 C -0.018 4.018 18 C -0.030 4.030 19 N -0.368 5.368 20 C 0.311 3.689 21 O -0.423 6.423 22 C 0.038 3.962 23 H 0.122 0.878 24 C -0.127 4.127 25 C -0.201 4.201 26 C -0.156 4.156 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.231 0.769 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.495 -2.510 11.548 12.078 hybrid contribution 1.356 -0.326 -1.060 1.752 sum 3.851 -2.835 10.488 11.527 Atomic orbital electron populations 1.22169 0.96815 1.01428 1.02308 1.21131 0.93794 0.82843 1.02390 1.57792 1.77865 1.23264 1.24050 1.19133 0.97475 0.91853 0.78921 1.21405 1.23798 1.07705 1.04598 0.91934 1.24963 0.96506 0.94845 0.97634 1.69933 1.42890 1.17194 1.22740 0.86624 0.81726 0.79565 0.79859 1.20176 1.21195 1.20225 1.02394 0.72842 0.73513 0.72994 1.93826 1.75067 1.72899 1.54017 1.93566 1.84494 1.31733 1.86480 1.58519 1.25704 1.25969 1.74046 1.21732 0.92503 0.92339 0.95254 1.21787 1.00051 0.88209 0.92915 1.45342 1.37611 1.10939 1.42939 1.20241 0.82748 0.81730 0.84159 1.90701 1.62617 1.48331 1.40621 1.21319 0.94386 0.86827 0.93640 0.87828 1.21966 0.95202 0.96053 0.99430 1.21951 1.00503 0.95352 1.02329 1.21728 0.99985 0.98780 0.95082 0.92310 0.92809 0.92014 0.89693 0.91661 0.95305 0.93182 0.92458 0.86704 0.89749 0.91302 0.89312 0.76882 0.87386 0.90607 0.92900 0.92977 0.93736 0.91621 0.95455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.12 2.07 5.92 -4.04 -0.02 2.05 16 3 N -0.99 -19.09 2.95 -115.66 -0.34 -19.43 16 4 C 0.25 5.83 5.60 -5.19 -0.03 5.80 16 5 C -0.54 -13.24 8.70 -34.44 -0.30 -13.54 16 6 H 0.06 1.49 7.26 -52.49 -0.38 1.11 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 9 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 S 2.77 50.45 5.24 -107.50 -0.56 49.89 16 14 O -0.97 -17.15 9.37 -57.17 -0.54 -17.69 16 15 O -0.98 -20.73 15.39 -57.17 -0.88 -21.61 16 16 N -1.00 -15.70 2.97 -107.71 -0.32 -16.02 16 17 C 0.11 1.49 6.53 -3.63 -0.02 1.47 16 18 C 0.10 1.03 7.34 -4.51 -0.03 0.99 16 19 N -0.72 -8.40 5.42 -61.33 -0.33 -8.73 16 20 C 0.53 7.63 6.30 -11.73 -0.07 7.55 16 21 O -0.55 -8.96 14.52 5.56 0.08 -8.88 16 22 C 0.15 2.18 2.89 -68.91 -0.20 1.98 16 23 H 0.10 1.47 8.08 -51.93 -0.42 1.05 16 24 C -0.11 -1.59 2.13 -90.62 -0.19 -1.78 16 25 C -0.14 -1.94 8.39 37.16 0.31 -1.62 16 26 C -0.10 -1.52 6.65 37.15 0.25 -1.27 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.46 7.09 -51.93 -0.37 1.09 16 31 H 0.07 0.96 5.15 -51.93 -0.27 0.69 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 1.28 6.96 -51.93 -0.36 0.92 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.11 1.71 6.99 -51.93 -0.36 1.35 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.40 3.88 8.80 -40.82 -0.36 3.53 16 40 H 0.11 1.64 3.33 -51.93 -0.17 1.46 16 41 H 0.08 1.11 5.89 -51.93 -0.31 0.81 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.66 7.98 -51.93 -0.41 0.25 16 44 H 0.04 0.72 5.39 -51.93 -0.28 0.44 16 45 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 46 H 0.03 0.41 7.31 -51.93 -0.38 0.03 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -30.36 357.67 -8.82 -39.17 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.00 Total: 5.69 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.03 Total: 0.99 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.26 Total: -67.78 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.33 Total: -48.18 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.56 Total: 49.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.36 -8.82 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337054027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.327 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds