Wall clock time and date at job start Tue Mar 31 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47197 * 2 1 4 4 C 1.46497 * 119.99672 * 274.99602 * 3 2 1 5 5 C 1.50704 * 109.47328 * 296.94785 * 4 3 2 6 6 H 1.08000 * 119.99694 * 5.79066 * 5 4 3 7 7 C 1.37872 * 120.00403 * 185.79272 * 5 4 3 8 8 N 1.31525 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00460 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46843 * 59.99992 * 9 7 5 11 11 H 1.48500 * 109.47220 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47022 * 300.00298 * 9 7 5 13 13 S 1.65596 * 120.00222 * 94.99604 * 3 2 1 14 14 O 1.42099 * 106.40364 * 340.10972 * 13 3 2 15 15 O 1.42096 * 106.40375 * 207.18624 * 13 3 2 16 16 N 1.65603 * 107.21747 * 93.64666 * 13 3 2 17 17 C 1.47273 * 121.35166 * 94.82106 * 16 13 3 18 18 C 1.52987 * 108.18528 * 118.52073 * 17 16 13 19 19 N 1.45640 * 110.77785 * 46.72637 * 18 17 16 20 20 C 1.33386 * 124.58961 * 338.09972 * 19 18 17 21 21 O 1.21278 * 118.49147 * 184.34301 * 20 19 18 22 22 C 1.47051 * 121.35710 * 274.84442 * 16 13 3 23 23 H 1.08999 * 109.56432 * 102.89058 * 22 16 13 24 24 C 1.52997 * 109.56461 * 342.53854 * 22 16 13 25 25 C 1.53008 * 109.46911 * 176.19195 * 24 22 16 26 26 C 1.52993 * 109.47432 * 296.19302 * 24 22 16 27 27 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47546 * 300.00684 * 1 2 3 29 29 H 1.09000 * 109.46941 * 60.00251 * 1 2 3 30 30 H 1.09001 * 109.47062 * 239.99106 * 2 1 3 31 31 H 1.08998 * 109.46508 * 120.00052 * 2 1 3 32 32 H 1.09001 * 109.47212 * 56.94772 * 4 3 2 33 33 H 1.09000 * 109.47436 * 176.94809 * 4 3 2 34 34 H 0.96993 * 119.99734 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.71634 * 358.84372 * 17 16 13 36 36 H 1.09000 * 109.72051 * 238.19286 * 17 16 13 37 37 H 1.08999 * 109.21649 * 286.38881 * 18 17 16 38 38 H 1.09002 * 109.17646 * 167.03674 * 18 17 16 39 39 H 0.96997 * 117.71235 * 158.07477 * 19 18 17 40 40 H 1.09001 * 109.47336 * 56.19830 * 24 22 16 41 41 H 1.08993 * 109.46784 * 76.74795 * 25 24 22 42 42 H 1.09000 * 109.46753 * 196.73981 * 25 24 22 43 43 H 1.09001 * 109.46763 * 316.74097 * 25 24 22 44 44 H 1.08997 * 109.47012 * 42.29629 * 26 24 22 45 45 H 1.08995 * 109.47818 * 162.29616 * 26 24 22 46 46 H 1.09003 * 109.46886 * 282.30283 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.1836 1.4210 -2.1284 6 1 3.6126 0.4812 -1.8134 7 6 3.5740 1.9916 -3.3212 8 7 3.0520 3.1364 -3.7044 9 14 4.8454 1.1398 -4.3923 10 1 4.3437 -0.2020 -4.7838 11 1 5.0903 1.9522 -5.6110 12 1 6.1132 0.9922 -3.6333 13 16 2.4121 2.1202 1.4286 14 8 1.7546 1.3882 2.4537 15 8 2.2229 3.5138 1.2251 16 7 4.0363 1.8984 1.6639 17 6 5.0168 2.9153 1.2475 18 6 5.7601 3.4003 2.4936 19 7 6.1865 2.2736 3.3121 20 6 5.6377 1.0585 3.2727 21 8 6.0267 0.2222 4.0602 22 6 4.5581 0.6778 2.2966 23 1 4.9719 0.0192 1.5331 24 6 3.4274 -0.0390 3.0371 25 6 3.9503 -1.3560 3.6143 26 6 2.9183 0.8495 4.1738 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.1992 2.1255 -1.7816 33 1 2.4801 3.1302 -1.0616 34 1 3.3269 3.5381 -4.5434 35 1 4.5011 3.7527 0.7776 36 1 5.7249 2.4772 0.5441 37 1 5.0996 4.0396 3.0793 38 1 6.6356 3.9733 2.1880 39 1 6.9212 2.4167 3.9290 40 1 2.6120 -0.2447 2.3436 41 1 4.5420 -1.1520 4.5066 42 1 3.1088 -1.9978 3.8753 43 1 4.5724 -1.8563 2.8722 44 1 2.8423 1.8790 3.8240 45 1 1.9366 0.5017 4.4952 46 1 3.6134 0.8010 5.0120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337054027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:14 Heat of formation + Delta-G solvation = -93.268170 kcal Electronic energy + Delta-G solvation = -30380.699513 eV Core-core repulsion = 26432.956798 eV Total energy + Delta-G solvation = -3947.742716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.71753 -39.01448 -37.93997 -37.70921 -37.10955 -36.35673 -34.65205 -33.80341 -31.47716 -30.54768 -28.59568 -28.12498 -27.05308 -25.16147 -24.74621 -23.18974 -22.19463 -20.90491 -19.51401 -18.90238 -18.51172 -18.42088 -18.07710 -17.55589 -17.11231 -16.80527 -16.44628 -15.98576 -15.63803 -15.41139 -15.16489 -14.79910 -14.75398 -14.48134 -14.02161 -13.82864 -13.66648 -13.59137 -13.54726 -13.41917 -13.26902 -13.14124 -12.93787 -12.71791 -12.69819 -12.52231 -12.43098 -12.21064 -12.03133 -11.93566 -11.71206 -11.67024 -11.60274 -11.20528 -10.72597 -10.56683 -10.19614 -9.94971 -9.71463 -8.15432 -6.28744 -0.38772 1.45936 1.46916 1.51878 1.54509 1.81138 2.25838 2.43874 2.52331 3.16568 3.28425 3.34115 3.54899 3.80393 3.90964 3.96921 4.12040 4.18202 4.33261 4.44053 4.47801 4.56432 4.59545 4.66667 4.76907 4.84471 4.93441 4.96311 4.98966 5.03378 5.13062 5.17382 5.25257 5.29202 5.37964 5.42502 5.44837 5.52370 5.61726 5.79344 5.84532 5.95125 6.15485 6.23792 6.83491 7.16860 7.41540 8.92791 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.005756 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.719665 B = 4863.606350 C = 5564.850259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.994 5.994 4 C 0.264 3.736 5 C -0.535 4.535 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.928 5.928 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.265 1.265 13 S 2.782 3.218 14 O -0.969 6.969 15 O -1.012 7.012 16 N -1.002 6.002 17 C 0.097 3.903 18 C 0.101 3.899 19 N -0.706 5.706 20 C 0.524 3.476 21 O -0.567 6.567 22 C 0.144 3.856 23 H 0.112 0.888 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.095 4.095 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.003 0.997 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.409 0.591 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -4.037 11.557 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.835 5.835 4 C 0.141 3.859 5 C -0.574 4.574 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.568 5.568 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.190 1.190 13 S 2.794 3.206 14 O -0.953 6.953 15 O -0.997 6.997 16 N -0.842 5.842 17 C -0.028 4.028 18 C -0.025 4.025 19 N -0.357 5.357 20 C 0.309 3.691 21 O -0.446 6.446 22 C 0.035 3.965 23 H 0.130 0.870 24 C -0.129 4.129 25 C -0.195 4.195 26 C -0.153 4.153 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.021 0.979 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.246 0.754 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.001 -3.860 12.211 13.417 hybrid contribution 0.864 0.107 -1.193 1.477 sum 4.865 -3.753 11.018 12.615 Atomic orbital electron populations 1.22157 0.95878 1.03167 1.01292 1.21360 0.94705 0.81475 1.03270 1.57745 1.78717 1.24187 1.22810 1.18644 0.95836 0.91083 0.80377 1.21679 1.23413 1.07792 1.04560 0.90988 1.25763 0.98419 0.95355 0.99035 1.70068 1.44600 1.18846 1.23282 0.85613 0.79637 0.78439 0.77985 1.19577 1.21516 1.19015 1.01958 0.73415 0.72625 0.72621 1.93840 1.75630 1.72513 1.53290 1.93519 1.85364 1.33930 1.86857 1.58295 1.25028 1.26930 1.73931 1.21923 0.92218 0.91538 0.97113 1.21873 1.01451 0.87791 0.91345 1.45259 1.37366 1.10280 1.42822 1.20133 0.82701 0.82390 0.83884 1.90700 1.63347 1.49193 1.41366 1.21445 0.94646 0.86407 0.93999 0.87018 1.21977 0.95171 0.96662 0.99111 1.21882 1.00931 0.94766 1.01877 1.21683 1.00009 0.98196 0.95428 0.89208 0.93112 0.93715 0.90180 0.89310 0.97890 0.95838 0.92556 0.88267 0.89176 0.90871 0.85353 0.75397 0.87746 0.91750 0.91486 0.92274 0.94924 0.91752 0.95268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.93 10.24 71.98 0.74 -4.19 16 2 C 0.12 3.78 5.92 86.38 0.51 4.30 16 3 N -0.99 -38.62 2.95 -519.84 -1.53 -40.15 16 4 C 0.26 12.77 5.60 85.63 0.48 13.25 16 5 C -0.54 -26.48 8.70 25.60 0.22 -26.26 16 6 H 0.07 3.36 7.26 -2.91 -0.02 3.34 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -51.71 13.29 21.45 0.28 -51.43 16 9 Si 0.96 40.19 29.54 68.60 2.03 42.21 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 13 S 2.78 101.32 5.24 -56.49 -0.30 101.02 16 14 O -0.97 -33.46 9.37 -128.00 -1.20 -34.66 16 15 O -1.01 -43.97 15.39 -128.00 -1.97 -45.94 16 16 N -1.00 -30.45 2.97 -494.68 -1.47 -31.92 16 17 C 0.10 2.59 6.53 86.23 0.56 3.16 16 18 C 0.10 1.91 7.34 86.54 0.63 2.54 16 19 N -0.71 -14.81 5.42 -467.10 -2.53 -17.34 16 20 C 0.52 14.17 6.30 87.79 0.55 14.72 16 21 O -0.57 -17.60 14.52 -3.02 -0.04 -17.64 16 22 C 0.14 4.02 2.89 44.06 0.13 4.15 16 23 H 0.11 2.94 8.08 -2.39 -0.02 2.92 16 24 C -0.11 -3.06 2.13 -10.79 -0.02 -3.09 16 25 C -0.14 -3.41 8.39 71.98 0.60 -2.80 16 26 C -0.10 -2.84 6.65 71.98 0.48 -2.36 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 2.67 7.09 -2.39 -0.02 2.65 16 31 H 0.09 2.44 5.15 -2.39 -0.01 2.43 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.02 1.26 6.96 -2.39 -0.02 1.24 16 34 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.10 2.99 6.99 -2.39 -0.02 2.97 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.41 6.86 8.80 -92.71 -0.82 6.05 16 40 H 0.10 2.97 3.33 -2.39 -0.01 2.96 16 41 H 0.06 1.78 5.89 -2.39 -0.01 1.76 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.37 7.98 -2.39 -0.02 1.35 16 44 H 0.03 1.03 5.39 -2.42 -0.01 1.01 16 45 H 0.06 1.90 7.85 -2.39 -0.02 1.88 16 46 H 0.03 0.85 7.31 -2.39 -0.02 0.83 16 Total: -1.00 -65.40 357.67 -1.20 -66.59 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.19 Total: 24.66 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.35 Total: 4.59 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -5.25 Total: -140.84 kcal Atomic # 8 Polarization: -95.02 SS G_CDS: -3.21 Total: -98.24 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 101.32 SS G_CDS: -0.30 Total: 101.02 kcal Total: -65.40 -1.20 -66.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337054027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.676 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds