Wall clock time and date at job start Tue Mar 31 2020 17:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47121 * 2 1 4 4 C 1.46497 * 119.99624 * 274.99856 * 3 2 1 5 5 C 1.50698 * 109.47334 * 279.39835 * 4 3 2 6 6 H 1.07995 * 120.00011 * 359.23200 * 5 4 3 7 7 C 1.37884 * 120.00067 * 179.22809 * 5 4 3 8 8 N 1.31517 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99918 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47432 * 90.00201 * 9 7 5 11 11 H 1.48498 * 109.47315 * 210.00124 * 9 7 5 12 12 H 1.48505 * 109.47502 * 330.00276 * 9 7 5 13 13 S 1.65597 * 119.99979 * 95.00353 * 3 2 1 14 14 O 1.42108 * 106.40011 * 330.24935 * 13 3 2 15 15 O 1.42098 * 106.40177 * 197.33624 * 13 3 2 16 16 N 1.65594 * 107.22217 * 83.79325 * 13 3 2 17 17 C 1.46507 * 119.99819 * 66.32280 * 16 13 3 18 18 C 1.52995 * 109.46828 * 163.14804 * 17 16 13 19 19 H 1.09001 * 110.86059 * 57.34166 * 18 17 16 20 20 C 1.54629 * 110.97129 * 293.54437 * 18 17 16 21 21 C 1.51280 * 104.19305 * 266.68079 * 20 18 17 22 22 O 1.21287 * 124.93840 * 163.71298 * 21 20 18 23 23 N 1.34413 * 110.12112 * 343.74556 * 21 20 18 24 24 C 1.46494 * 124.35348 * 179.56943 * 23 21 20 25 25 C 1.53000 * 109.47180 * 90.02641 * 24 23 21 26 26 C 1.46770 * 111.29819 * 359.59345 * 23 21 20 27 27 H 1.09001 * 109.46585 * 60.00228 * 1 2 3 28 28 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47085 * 299.99909 * 1 2 3 30 30 H 1.09000 * 109.47085 * 240.00091 * 2 1 3 31 31 H 1.09001 * 109.47466 * 120.00012 * 2 1 3 32 32 H 1.08997 * 109.47527 * 39.40587 * 4 3 2 33 33 H 1.09006 * 109.46930 * 159.40167 * 4 3 2 34 34 H 0.96996 * 120.00003 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00257 * 246.32160 * 16 13 3 36 36 H 1.09001 * 109.47027 * 283.14666 * 17 16 13 37 37 H 1.08994 * 109.46891 * 43.14488 * 17 16 13 38 38 H 1.08999 * 110.48381 * 25.36075 * 20 18 17 39 39 H 1.09005 * 110.48385 * 147.87436 * 20 18 17 40 40 H 1.08998 * 109.47744 * 210.02587 * 24 23 21 41 41 H 1.09010 * 109.47322 * 330.02597 * 24 23 21 42 42 H 1.08997 * 109.47304 * 300.00053 * 25 24 23 43 43 H 1.08997 * 109.47113 * 60.00151 * 25 24 23 44 44 H 1.09004 * 109.47266 * 180.02562 * 25 24 23 45 45 H 1.08995 * 110.24290 * 258.01446 * 26 23 21 46 46 H 1.09005 * 110.24212 * 136.01547 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4463 1.7065 -1.9350 6 1 4.1017 0.9910 -1.4610 7 6 3.7879 2.2521 -3.1544 8 7 2.9900 3.1239 -3.7315 9 14 5.3841 1.7532 -3.9865 10 1 5.1402 0.5778 -4.8608 11 1 5.8893 2.8835 -4.8064 12 1 6.3918 1.4014 -2.9540 13 16 2.4123 2.1202 1.4287 14 8 1.5794 1.5403 2.4233 15 8 2.4484 3.5155 1.1621 16 7 3.9634 1.6747 1.7997 17 6 5.0746 2.1154 0.9526 18 6 6.3926 1.9438 1.7103 19 1 6.5287 0.9084 2.0228 20 6 6.4629 2.9014 2.9223 21 6 7.1755 4.1243 2.3880 22 8 7.1886 5.2111 2.9262 23 7 7.7914 3.8313 1.2297 24 6 8.5663 4.7912 0.4397 25 6 10.0281 4.7602 0.8902 26 6 7.5872 2.4262 0.8579 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3185 1.8689 -1.9161 33 1 2.1706 3.1806 -1.0667 34 1 3.2301 3.5074 -4.5894 35 1 4.1364 1.1220 2.5778 36 1 5.0978 1.5157 0.0427 37 1 4.9390 3.1651 0.6925 38 1 5.4603 3.1618 3.2614 39 1 7.0335 2.4489 3.7334 40 1 8.5057 4.5260 -0.6158 41 1 8.1621 5.7929 0.5864 42 1 10.0888 5.0254 1.9457 43 1 10.4324 3.7586 0.7435 44 1 10.6047 5.4747 0.3027 45 1 8.4771 1.8415 1.0904 46 1 7.3498 2.3476 -0.2031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593641774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:56 Heat of formation + Delta-G solvation = -118.205733 kcal Electronic energy + Delta-G solvation = -28730.520634 eV Core-core repulsion = 24781.696545 eV Total energy + Delta-G solvation = -3948.824089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51460 -36.93181 -36.61282 -36.05794 -35.32961 -35.21021 -33.04486 -32.75894 -29.95700 -29.59744 -27.96599 -26.68052 -25.20907 -23.31430 -23.19561 -21.73100 -20.90165 -19.45226 -18.74571 -17.20053 -17.07456 -16.76445 -16.55598 -16.11563 -15.53624 -15.46981 -15.08007 -14.43904 -14.24831 -14.00880 -13.82175 -13.56733 -13.36269 -13.18650 -13.06588 -12.84644 -12.58969 -12.13431 -12.09115 -12.04491 -11.86376 -11.73055 -11.67441 -11.45207 -11.35243 -11.30904 -11.12969 -11.08691 -11.00032 -10.85367 -10.55481 -10.42974 -10.06742 -9.85192 -9.69786 -9.07121 -8.73137 -8.56416 -8.09842 -6.17170 -4.24159 1.26229 2.66506 3.01609 3.15826 3.21642 3.25473 3.49235 4.11756 4.27513 4.32914 4.42224 4.62042 4.87265 4.99422 5.09255 5.09663 5.16753 5.28109 5.35534 5.41208 5.43562 5.50552 5.61328 5.64726 5.70393 5.74828 5.79885 5.83484 5.97557 6.03424 6.09218 6.14065 6.30843 6.35619 6.55495 6.65907 6.69250 7.13909 7.23240 7.34539 7.42599 7.64123 7.79873 8.09817 8.23543 8.79548 9.41017 10.90936 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.005473 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.381132 B = 5114.995688 C = 7102.096358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.784 3.216 14 O -0.999 6.999 15 O -0.977 6.977 16 N -1.131 6.131 17 C 0.125 3.875 18 C -0.106 4.106 19 H 0.103 0.897 20 C -0.154 4.154 21 C 0.520 3.480 22 O -0.536 6.536 23 N -0.618 5.618 24 C 0.119 3.881 25 C -0.167 4.167 26 C 0.106 3.894 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 -6.350 7.892 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.792 3.208 14 O -0.983 6.983 15 O -0.960 6.960 16 N -0.889 5.889 17 C -0.001 4.001 18 C -0.126 4.126 19 H 0.122 0.878 20 C -0.194 4.194 21 C 0.308 3.692 22 O -0.412 6.412 23 N -0.352 5.352 24 C -0.003 4.003 25 C -0.225 4.225 26 C -0.017 4.017 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.598 -4.871 8.282 12.894 hybrid contribution 1.259 -0.845 -0.671 1.658 sum 9.857 -5.716 7.611 13.703 Atomic orbital electron populations 1.22216 0.96974 1.01338 1.02515 1.20945 0.93665 0.82830 1.01957 1.57713 1.78549 1.22994 1.24075 1.19215 0.97411 0.92381 0.78928 1.21521 1.05761 1.25873 1.04725 0.91778 1.24961 0.97003 0.94829 0.97079 1.69930 1.36869 1.28541 1.17095 0.86625 0.83573 0.78182 0.79712 1.20673 1.21171 1.19738 1.01797 0.72618 0.73738 0.72693 1.93555 1.65479 1.79728 1.59581 1.93592 1.86434 1.30825 1.85161 1.56006 1.25143 1.68836 1.38927 1.21432 0.83584 1.02008 0.93110 1.22425 0.94885 1.00349 0.94990 0.87834 1.22461 1.03288 0.94878 0.98814 1.20889 0.78274 0.89479 0.80588 1.90706 1.62348 1.26015 1.62170 1.48292 1.51950 1.11345 1.23652 1.21365 0.90697 0.93179 0.95044 1.22147 0.96234 1.02020 1.02118 1.22134 0.97406 0.81226 1.00969 0.92091 0.92444 0.92482 0.90132 0.92206 0.94500 0.92963 0.92547 0.76111 0.88955 0.89988 0.87569 0.87850 0.90039 0.89907 0.92414 0.92526 0.91508 0.90742 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.17 6.03 -4.04 -0.02 2.15 16 3 N -0.99 -19.28 2.84 -115.66 -0.33 -19.60 16 4 C 0.24 5.73 5.45 -5.20 -0.03 5.70 16 5 C -0.54 -12.96 8.75 -34.44 -0.30 -13.27 16 6 H 0.06 1.43 6.16 -52.49 -0.32 1.11 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 9 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 S 2.78 52.71 6.08 -107.50 -0.65 52.06 16 14 O -1.00 -19.64 17.17 -57.17 -0.98 -20.63 16 15 O -0.98 -22.48 15.95 -57.17 -0.91 -23.40 16 16 N -1.13 -16.34 5.53 -10.61 -0.06 -16.40 16 17 C 0.12 1.83 5.54 -4.04 -0.02 1.81 16 18 C -0.11 -1.13 3.23 -88.99 -0.29 -1.42 16 19 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 20 C -0.15 -1.80 6.34 -26.74 -0.17 -1.97 16 21 C 0.52 7.86 8.02 -10.86 -0.09 7.78 16 22 O -0.54 -10.17 17.59 5.55 0.10 -10.07 16 23 N -0.62 -7.98 2.93 -172.41 -0.51 -8.49 16 24 C 0.12 1.39 6.65 -4.05 -0.03 1.36 16 25 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 26 C 0.11 1.12 6.90 -3.12 -0.02 1.10 16 27 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 30 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 31 H 0.06 0.85 7.78 -51.93 -0.40 0.44 16 32 H 0.04 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.05 1.39 6.79 -51.93 -0.35 1.03 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.41 4.52 8.67 -34.46 -0.30 4.22 16 36 H 0.09 1.44 5.83 -51.93 -0.30 1.14 16 37 H 0.08 1.46 7.68 -51.93 -0.40 1.06 16 38 H 0.11 1.36 7.52 -51.93 -0.39 0.97 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.08 7.93 -51.92 -0.41 0.67 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -33.39 387.07 -9.58 -42.97 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.49 Total: 5.95 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.31 Total: 1.30 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.16 Total: -68.10 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -1.80 Total: -54.09 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.65 Total: 52.06 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.39 -9.58 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593641774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.235 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds