Wall clock time and date at job start Tue Mar 31 2020 17:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47121 * 2 1 4 4 C 1.46497 * 119.99624 * 274.99856 * 3 2 1 5 5 C 1.50698 * 109.47334 * 279.39835 * 4 3 2 6 6 H 1.07995 * 120.00011 * 359.23200 * 5 4 3 7 7 C 1.37884 * 120.00067 * 179.22809 * 5 4 3 8 8 N 1.31517 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99918 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47432 * 90.00201 * 9 7 5 11 11 H 1.48498 * 109.47315 * 210.00124 * 9 7 5 12 12 H 1.48505 * 109.47502 * 330.00276 * 9 7 5 13 13 S 1.65597 * 119.99979 * 95.00353 * 3 2 1 14 14 O 1.42108 * 106.40011 * 330.24935 * 13 3 2 15 15 O 1.42098 * 106.40177 * 197.33624 * 13 3 2 16 16 N 1.65594 * 107.22217 * 83.79325 * 13 3 2 17 17 C 1.46507 * 119.99819 * 66.32280 * 16 13 3 18 18 C 1.52995 * 109.46828 * 163.14804 * 17 16 13 19 19 H 1.09001 * 110.86059 * 57.34166 * 18 17 16 20 20 C 1.54629 * 110.97129 * 293.54437 * 18 17 16 21 21 C 1.51280 * 104.19305 * 266.68079 * 20 18 17 22 22 O 1.21287 * 124.93840 * 163.71298 * 21 20 18 23 23 N 1.34413 * 110.12112 * 343.74556 * 21 20 18 24 24 C 1.46494 * 124.35348 * 179.56943 * 23 21 20 25 25 C 1.53000 * 109.47180 * 90.02641 * 24 23 21 26 26 C 1.46770 * 111.29819 * 359.59345 * 23 21 20 27 27 H 1.09001 * 109.46585 * 60.00228 * 1 2 3 28 28 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47085 * 299.99909 * 1 2 3 30 30 H 1.09000 * 109.47085 * 240.00091 * 2 1 3 31 31 H 1.09001 * 109.47466 * 120.00012 * 2 1 3 32 32 H 1.08997 * 109.47527 * 39.40587 * 4 3 2 33 33 H 1.09006 * 109.46930 * 159.40167 * 4 3 2 34 34 H 0.96996 * 120.00003 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00257 * 246.32160 * 16 13 3 36 36 H 1.09001 * 109.47027 * 283.14666 * 17 16 13 37 37 H 1.08994 * 109.46891 * 43.14488 * 17 16 13 38 38 H 1.08999 * 110.48381 * 25.36075 * 20 18 17 39 39 H 1.09005 * 110.48385 * 147.87436 * 20 18 17 40 40 H 1.08998 * 109.47744 * 210.02587 * 24 23 21 41 41 H 1.09010 * 109.47322 * 330.02597 * 24 23 21 42 42 H 1.08997 * 109.47304 * 300.00053 * 25 24 23 43 43 H 1.08997 * 109.47113 * 60.00151 * 25 24 23 44 44 H 1.09004 * 109.47266 * 180.02562 * 25 24 23 45 45 H 1.08995 * 110.24290 * 258.01446 * 26 23 21 46 46 H 1.09005 * 110.24212 * 136.01547 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4463 1.7065 -1.9350 6 1 4.1017 0.9910 -1.4610 7 6 3.7879 2.2521 -3.1544 8 7 2.9900 3.1239 -3.7315 9 14 5.3841 1.7532 -3.9865 10 1 5.1402 0.5778 -4.8608 11 1 5.8893 2.8835 -4.8064 12 1 6.3918 1.4014 -2.9540 13 16 2.4123 2.1202 1.4287 14 8 1.5794 1.5403 2.4233 15 8 2.4484 3.5155 1.1621 16 7 3.9634 1.6747 1.7997 17 6 5.0746 2.1154 0.9526 18 6 6.3926 1.9438 1.7103 19 1 6.5287 0.9084 2.0228 20 6 6.4629 2.9014 2.9223 21 6 7.1755 4.1243 2.3880 22 8 7.1886 5.2111 2.9262 23 7 7.7914 3.8313 1.2297 24 6 8.5663 4.7912 0.4397 25 6 10.0281 4.7602 0.8902 26 6 7.5872 2.4262 0.8579 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3185 1.8689 -1.9161 33 1 2.1706 3.1806 -1.0667 34 1 3.2301 3.5074 -4.5894 35 1 4.1364 1.1220 2.5778 36 1 5.0978 1.5157 0.0427 37 1 4.9390 3.1651 0.6925 38 1 5.4603 3.1618 3.2614 39 1 7.0335 2.4489 3.7334 40 1 8.5057 4.5260 -0.6158 41 1 8.1621 5.7929 0.5864 42 1 10.0888 5.0254 1.9457 43 1 10.4324 3.7586 0.7435 44 1 10.6047 5.4747 0.3027 45 1 8.4771 1.8415 1.0904 46 1 7.3498 2.3476 -0.2031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593641774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:55 Heat of formation + Delta-G solvation = -143.553253 kcal Electronic energy + Delta-G solvation = -28731.619785 eV Core-core repulsion = 24781.696545 eV Total energy + Delta-G solvation = -3949.923240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.54218 -38.35261 -38.00148 -37.63134 -36.87365 -36.43538 -34.62651 -34.07482 -31.48527 -30.54252 -28.95132 -28.45584 -26.28536 -24.91508 -24.23359 -23.24099 -21.88955 -20.60303 -20.12727 -18.69354 -18.59859 -18.24549 -17.85973 -17.43048 -16.99038 -16.55420 -16.48491 -15.95266 -15.43450 -15.22909 -14.99263 -14.77625 -14.59974 -14.50400 -14.24501 -14.09936 -13.74103 -13.63059 -13.52027 -13.34529 -13.19934 -13.10807 -12.99327 -12.91484 -12.67103 -12.63704 -12.59729 -12.34362 -12.23006 -12.08131 -12.01280 -11.82713 -11.65599 -11.51537 -10.84131 -10.53350 -10.36106 -9.76584 -9.70803 -8.10310 -6.24440 -0.27185 1.48443 1.50204 1.54872 1.59967 2.02489 2.10692 2.48307 2.64652 3.22427 3.38553 3.42482 3.52226 3.76117 3.94458 4.02862 4.12090 4.26325 4.41191 4.47459 4.47963 4.49381 4.57833 4.65950 4.68024 4.74836 4.81326 4.84753 4.87797 4.96267 5.02239 5.06997 5.19555 5.23839 5.25285 5.32859 5.45342 5.58584 5.61623 5.82902 5.94777 6.13495 6.16467 6.31298 6.88039 7.14046 7.45720 8.98353 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.005473 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.381132 B = 5114.995688 C = 7102.096358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.533 4.533 6 H 0.087 0.913 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.237 1.237 13 S 2.796 3.204 14 O -1.005 7.005 15 O -1.024 7.024 16 N -1.109 6.109 17 C 0.123 3.877 18 C -0.092 4.092 19 H 0.153 0.847 20 C -0.149 4.149 21 C 0.501 3.499 22 O -0.591 6.591 23 N -0.619 5.619 24 C 0.109 3.891 25 C -0.155 4.155 26 C 0.102 3.898 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.262 0.738 35 H 0.427 0.573 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.819 -10.035 8.623 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.002 4.002 3 N -0.836 5.836 4 C 0.134 3.866 5 C -0.572 4.572 6 H 0.105 0.895 7 C -0.193 4.193 8 N -0.575 5.575 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.159 1.159 13 S 2.804 3.196 14 O -0.989 6.989 15 O -1.008 7.008 16 N -0.873 5.873 17 C -0.003 4.003 18 C -0.112 4.112 19 H 0.171 0.829 20 C -0.189 4.189 21 C 0.291 3.709 22 O -0.472 6.472 23 N -0.352 5.352 24 C -0.013 4.013 25 C -0.213 4.213 26 C -0.020 4.020 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.158 0.842 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.134 0.866 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.245 -8.630 9.035 16.810 hybrid contribution 0.365 0.302 -0.881 1.001 sum 11.610 -8.328 8.154 16.451 Atomic orbital electron populations 1.22217 0.96490 1.03138 1.01129 1.21252 0.94240 0.81110 1.03588 1.57590 1.79367 1.24157 1.22465 1.18736 0.96942 0.90686 0.80232 1.21861 1.05667 1.25302 1.04357 0.89500 1.25909 1.00572 0.94769 0.98066 1.70105 1.39314 1.30515 1.17578 0.85583 0.80029 0.77211 0.79134 1.20490 1.22355 1.15936 1.01200 0.73440 0.72679 0.72290 1.93537 1.66456 1.79469 1.59462 1.93539 1.87353 1.34145 1.85757 1.55480 1.23389 1.68832 1.39604 1.21434 0.85550 0.99444 0.93844 1.22477 0.92296 1.02697 0.93769 0.82932 1.22512 1.02539 0.93632 1.00232 1.21612 0.78399 0.89806 0.81122 1.90665 1.64416 1.28274 1.63854 1.48520 1.51074 1.12699 1.22874 1.21508 0.91913 0.91996 0.95836 1.22046 0.94697 1.03499 1.01100 1.22419 0.98887 0.79985 1.00741 0.93805 0.89059 0.93541 0.89768 0.89134 0.96782 0.96976 0.92937 0.73606 0.89293 0.94069 0.89077 0.84164 0.88625 0.92522 0.94142 0.90727 0.90041 0.86610 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.06 10.24 71.98 0.74 -4.33 16 2 C 0.12 3.81 6.03 86.38 0.52 4.33 16 3 N -0.99 -38.55 2.84 -519.84 -1.48 -40.03 16 4 C 0.26 12.57 5.45 85.63 0.47 13.04 16 5 C -0.53 -25.47 8.75 25.60 0.22 -25.25 16 6 H 0.09 3.67 6.16 -2.91 -0.02 3.65 16 7 C 0.01 0.29 5.46 84.66 0.46 0.75 16 8 N -0.94 -53.09 13.29 21.45 0.28 -52.80 16 9 Si 0.96 38.16 29.54 68.60 2.03 40.19 16 10 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.30 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.24 -8.00 7.11 99.48 0.71 -7.29 16 13 S 2.80 105.53 6.08 -56.49 -0.34 105.19 16 14 O -1.01 -38.42 17.17 -128.00 -2.20 -40.62 16 15 O -1.02 -49.28 15.95 -128.00 -2.04 -51.32 16 16 N -1.11 -29.80 5.53 -187.49 -1.04 -30.83 16 17 C 0.12 3.38 5.54 86.38 0.48 3.85 16 18 C -0.09 -1.59 3.23 -9.74 -0.03 -1.62 16 19 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 20 C -0.15 -3.12 6.34 30.59 0.19 -2.92 16 21 C 0.50 14.97 8.02 87.90 0.71 15.67 16 22 O -0.59 -23.33 17.59 -3.05 -0.05 -23.38 16 23 N -0.62 -15.06 2.93 -817.98 -2.40 -17.46 16 24 C 0.11 2.48 6.65 86.38 0.57 3.05 16 25 C -0.16 -2.71 10.24 71.98 0.74 -1.97 16 26 C 0.10 1.74 6.90 86.83 0.60 2.34 16 27 H 0.04 1.42 8.11 -2.39 -0.02 1.40 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.46 7.97 -2.39 -0.02 1.44 16 30 H 0.08 2.56 8.11 -2.39 -0.02 2.54 16 31 H 0.09 2.25 7.78 -2.39 -0.02 2.24 16 32 H 0.01 0.74 8.10 -2.39 -0.02 0.72 16 33 H 0.01 0.69 6.79 -2.38 -0.02 0.67 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.43 7.96 8.67 -96.75 -0.84 7.12 16 36 H 0.09 2.52 5.83 -2.39 -0.01 2.50 16 37 H 0.04 1.48 7.68 -2.39 -0.02 1.46 16 38 H 0.09 2.22 7.52 -2.39 -0.02 2.20 16 39 H 0.14 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.56 7.93 -2.38 -0.02 1.54 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.58 7.91 -2.38 -0.02 1.56 16 Total: -1.00 -78.32 387.07 -1.43 -79.74 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.14 Total: 24.36 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.67 Total: 6.96 kcal Atomic # 7 Polarization: -136.49 SS G_CDS: -4.62 Total: -141.12 kcal Atomic # 8 Polarization: -111.03 SS G_CDS: -4.29 Total: -115.32 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Atomic # 16 Polarization: 105.53 SS G_CDS: -0.34 Total: 105.19 kcal Total: -78.32 -1.43 -79.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593641774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.809 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds