Wall clock time and date at job start Tue Mar 31 2020 17:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47094 * 2 1 4 4 C 1.46766 * 124.35141 * 89.99453 * 3 2 1 5 5 C 1.54485 * 105.47100 * 163.00641 * 4 3 2 6 6 H 1.08998 * 110.96879 * 143.57587 * 5 4 3 7 7 C 1.52998 * 110.96739 * 267.29837 * 5 4 3 8 8 N 1.46501 * 109.46780 * 184.99948 * 7 5 4 9 9 S 1.65606 * 119.99972 * 164.99904 * 8 7 5 10 10 O 1.42095 * 106.40359 * 311.46471 * 9 8 7 11 11 O 1.42099 * 106.40455 * 178.54231 * 9 8 7 12 12 N 1.65597 * 107.21522 * 65.00367 * 9 8 7 13 13 C 1.46499 * 120.00070 * 269.99831 * 12 9 8 14 14 C 1.46506 * 120.00316 * 90.00236 * 12 9 8 15 15 H 1.09005 * 109.46360 * 359.97438 * 14 12 9 16 16 C 1.52993 * 109.47399 * 119.99691 * 14 12 9 17 17 C 1.50699 * 109.46892 * 239.99956 * 14 12 9 18 18 H 1.08002 * 120.00511 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99783 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99573 * 180.27665 * 19 17 14 21 21 Si 1.86800 * 119.99781 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.54627 * 101.76298 * 25.41721 * 5 4 3 26 26 C 1.34425 * 124.34983 * 270.02617 * 3 2 1 27 27 O 1.21278 * 124.93811 * 0.41508 * 26 3 2 28 28 H 1.09008 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47307 * 299.99782 * 1 2 3 30 30 H 1.08992 * 109.47351 * 60.00649 * 1 2 3 31 31 H 1.08992 * 109.47175 * 239.99699 * 2 1 3 32 32 H 1.09002 * 109.47173 * 119.99887 * 2 1 3 33 33 H 1.09004 * 110.24213 * 44.01257 * 4 3 2 34 34 H 1.08994 * 110.32479 * 282.04950 * 4 3 2 35 35 H 1.09001 * 109.47034 * 65.00453 * 7 5 4 36 36 H 1.08998 * 109.47671 * 304.99849 * 7 5 4 37 37 H 0.97000 * 120.00694 * 345.00602 * 8 7 5 38 38 H 1.08999 * 109.47549 * 269.99899 * 13 12 9 39 39 H 1.09002 * 109.46993 * 30.00124 * 13 12 9 40 40 H 1.09003 * 109.47290 * 149.99908 * 13 12 9 41 41 H 1.09001 * 109.47225 * 179.97438 * 16 14 12 42 42 H 1.08998 * 109.47413 * 300.00208 * 16 14 12 43 43 H 1.08997 * 109.47143 * 60.00037 * 16 14 12 44 44 H 0.97004 * 119.99485 * 179.72881 * 20 19 17 45 45 H 1.09002 * 110.48397 * 93.88082 * 25 5 4 46 46 H 1.08999 * 110.48284 * 216.51999 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3445 0.7485 6 1 2.9304 4.2518 1.3014 7 6 4.6601 3.0069 0.8831 8 7 5.4611 4.1874 0.5499 9 16 7.0652 4.2418 0.9579 10 8 7.1458 3.8509 2.3217 11 8 7.5604 5.4829 0.4745 12 7 7.8327 3.0609 0.0869 13 6 7.9618 1.7102 0.6392 14 6 8.3828 3.3669 -1.2361 15 1 8.1914 4.4129 -1.4759 16 6 9.8912 3.1116 -1.2328 17 6 7.7265 2.4870 -2.2686 18 1 6.9752 1.7712 -1.9694 19 6 8.0853 2.5959 -3.5955 20 7 7.5086 1.8319 -4.4974 21 14 9.3842 3.8346 -4.1132 22 1 10.7246 3.1975 -4.0602 23 1 9.1079 4.2918 -5.4988 24 1 9.3528 4.9990 -3.1922 25 6 2.7686 3.4756 -0.7379 26 6 2.2707 2.0965 -1.1098 27 8 2.1204 1.6947 -2.2442 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.8327 1.5533 1.9382 34 1 1.3643 2.5305 1.6445 35 1 4.9111 2.1936 0.2022 36 1 4.8721 2.7014 1.9077 37 1 5.0519 4.9373 0.0904 38 1 8.8884 1.6375 1.2087 39 1 7.1155 1.5031 1.2942 40 1 7.9776 0.9849 -0.1743 41 1 10.3003 3.3388 -2.2172 42 1 10.3659 3.7479 -0.4859 43 1 10.0821 2.0656 -0.9931 44 1 7.7582 1.9112 -5.4314 45 1 1.9733 4.2121 -0.8529 46 1 3.6316 3.7465 -1.3461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593642029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:18 Heat of formation + Delta-G solvation = -102.303136 kcal Electronic energy + Delta-G solvation = -28648.040485 eV Core-core repulsion = 24699.905984 eV Total energy + Delta-G solvation = -3948.134501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.56289 -37.03184 -36.76399 -36.40625 -35.43354 -35.40835 -33.14852 -32.52131 -30.04805 -29.66695 -28.03519 -25.80489 -25.34954 -25.04493 -23.38793 -21.12825 -20.85351 -19.54657 -18.76636 -17.46566 -17.16718 -16.98883 -16.48298 -16.33941 -15.69063 -15.48879 -15.09181 -14.56260 -14.37032 -14.04944 -13.67597 -13.59445 -13.45924 -13.22731 -13.12588 -12.87485 -12.64999 -12.36184 -12.20684 -12.13872 -12.01325 -11.96907 -11.72133 -11.65713 -11.54776 -11.48779 -11.23108 -11.18339 -11.01212 -10.94594 -10.55913 -10.14408 -9.69148 -9.61827 -9.47141 -9.27483 -8.78266 -8.65000 -8.15006 -6.14750 -4.16980 1.08864 2.69755 2.94599 3.23439 3.30577 3.36953 3.38423 3.96953 4.24636 4.31084 4.33859 4.44486 4.73745 4.87383 4.95308 5.02389 5.16332 5.17908 5.21342 5.28751 5.38571 5.39355 5.46772 5.53737 5.62213 5.69637 5.81317 5.97729 5.99866 6.02206 6.04495 6.14724 6.25261 6.37889 6.51203 6.52389 6.62815 6.84149 7.08891 7.10484 7.28508 7.37897 7.62371 8.26017 8.42480 8.86869 9.45158 10.97232 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.004664 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.321313 B = 6001.500563 C = 7467.511495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.624 5.624 4 C 0.111 3.889 5 C -0.106 4.106 6 H 0.106 0.894 7 C 0.128 3.872 8 N -1.126 6.126 9 S 2.786 3.214 10 O -0.994 6.994 11 O -0.983 6.983 12 N -0.984 5.984 13 C 0.103 3.897 14 C 0.240 3.760 15 H 0.057 0.943 16 C -0.158 4.158 17 C -0.529 4.529 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.889 5.889 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.262 1.262 25 C -0.156 4.156 26 C 0.520 3.480 27 O -0.521 6.521 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.058 0.942 44 H 0.266 0.734 45 H 0.104 0.896 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -0.202 13.695 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.000 4.000 3 N -0.360 5.360 4 C -0.013 4.013 5 C -0.127 4.127 6 H 0.124 0.876 7 C 0.001 3.999 8 N -0.886 5.886 9 S 2.794 3.206 10 O -0.977 6.977 11 O -0.967 6.967 12 N -0.826 5.826 13 C -0.043 4.043 14 C 0.135 3.865 15 H 0.074 0.926 16 C -0.217 4.217 17 C -0.568 4.568 18 H 0.100 0.900 19 C -0.127 4.127 20 N -0.526 5.526 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.186 1.186 25 C -0.196 4.196 26 C 0.307 3.693 27 O -0.396 6.396 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.247 0.753 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.712 -0.119 13.623 17.330 hybrid contribution 0.328 0.526 -0.941 1.126 sum -10.384 0.407 12.682 16.396 Atomic orbital electron populations 1.22156 0.96036 1.02198 1.02255 1.21324 0.94086 0.81283 1.03344 1.48317 1.66739 1.13776 1.07184 1.22063 0.99063 0.92559 0.87634 1.22380 0.94555 0.99288 0.96435 0.87598 1.21238 0.89586 0.87925 1.01117 1.55964 1.29642 1.26502 1.76444 1.01696 0.72587 0.73104 0.73177 1.93551 1.86499 1.84080 1.33596 1.93591 1.78525 1.42773 1.81809 1.57444 1.70710 1.23185 1.31232 1.21272 0.99840 0.84623 0.98575 1.19080 0.90358 0.97797 0.79253 0.92586 1.22414 0.98466 1.01287 0.99581 1.21167 1.23446 1.21744 0.90463 0.90010 1.24896 0.95998 0.95305 0.96481 1.69886 1.42142 1.38717 1.01882 0.87032 0.82019 0.82691 0.77639 1.20336 1.22175 1.18637 1.22496 1.04158 0.96014 0.96945 1.20874 0.76461 0.87596 0.84332 1.90763 1.52685 1.75095 1.21093 0.91549 0.92615 0.92285 0.89846 0.90400 0.89945 0.90754 0.90977 0.90146 0.75271 0.93658 0.93029 0.89678 0.93295 0.94741 0.92296 0.92424 0.87742 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.12 1.19 6.65 -4.04 -0.03 1.16 16 3 N -0.62 -6.95 2.93 -172.42 -0.51 -7.46 16 4 C 0.11 0.87 6.90 -3.12 -0.02 0.84 16 5 C -0.11 -0.95 3.21 -88.99 -0.29 -1.24 16 6 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 7 C 0.13 1.51 5.53 -4.04 -0.02 1.48 16 8 N -1.13 -15.56 5.88 -10.61 -0.06 -15.62 16 9 S 2.79 49.31 6.09 -107.50 -0.66 48.66 16 10 O -0.99 -18.29 16.68 -57.17 -0.95 -19.25 16 11 O -0.98 -20.38 16.70 -57.17 -0.95 -21.34 16 12 N -0.98 -18.89 3.12 -115.85 -0.36 -19.25 16 13 C 0.10 1.71 9.28 59.85 0.56 2.27 16 14 C 0.24 5.44 2.21 -69.08 -0.15 5.29 16 15 H 0.06 1.35 5.97 -51.93 -0.31 1.04 16 16 C -0.16 -3.38 8.68 37.15 0.32 -3.06 16 17 C -0.53 -13.78 8.57 -34.44 -0.30 -14.08 16 18 H 0.08 2.28 7.58 -52.49 -0.40 1.88 16 19 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 20 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 21 Si 0.88 21.30 24.38 -169.99 -4.14 17.15 16 22 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 25 C -0.16 -1.79 6.25 -26.75 -0.17 -1.96 16 26 C 0.52 7.68 8.02 -10.86 -0.09 7.59 16 27 O -0.52 -10.36 17.60 5.56 0.10 -10.26 16 28 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.99 7.93 -51.93 -0.41 0.57 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 37 H 0.41 5.00 8.37 -34.47 -0.29 4.71 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 40 H 0.08 1.51 7.02 -51.93 -0.36 1.14 16 41 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.11 1.55 7.60 -51.93 -0.39 1.16 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -35.88 377.33 -8.33 -44.21 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.36 Total: 3.73 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.10 Total: -0.70 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.16 Total: -67.90 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.81 Total: -50.85 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.15 kcal Atomic # 16 Polarization: 49.31 SS G_CDS: -0.66 Total: 48.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.88 -8.33 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.089 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds