Wall clock time and date at job start Tue Mar 31 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47094 * 2 1 4 4 C 1.46766 * 124.35141 * 89.99453 * 3 2 1 5 5 C 1.54485 * 105.47100 * 163.00641 * 4 3 2 6 6 H 1.08998 * 110.96879 * 143.57587 * 5 4 3 7 7 C 1.52998 * 110.96739 * 267.29837 * 5 4 3 8 8 N 1.46501 * 109.46780 * 184.99948 * 7 5 4 9 9 S 1.65606 * 119.99972 * 164.99904 * 8 7 5 10 10 O 1.42095 * 106.40359 * 311.46471 * 9 8 7 11 11 O 1.42099 * 106.40455 * 178.54231 * 9 8 7 12 12 N 1.65597 * 107.21522 * 65.00367 * 9 8 7 13 13 C 1.46499 * 120.00070 * 269.99831 * 12 9 8 14 14 C 1.46506 * 120.00316 * 90.00236 * 12 9 8 15 15 H 1.09005 * 109.46360 * 359.97438 * 14 12 9 16 16 C 1.52993 * 109.47399 * 119.99691 * 14 12 9 17 17 C 1.50699 * 109.46892 * 239.99956 * 14 12 9 18 18 H 1.08002 * 120.00511 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99783 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99573 * 180.27665 * 19 17 14 21 21 Si 1.86800 * 119.99781 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.54627 * 101.76298 * 25.41721 * 5 4 3 26 26 C 1.34425 * 124.34983 * 270.02617 * 3 2 1 27 27 O 1.21278 * 124.93811 * 0.41508 * 26 3 2 28 28 H 1.09008 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47307 * 299.99782 * 1 2 3 30 30 H 1.08992 * 109.47351 * 60.00649 * 1 2 3 31 31 H 1.08992 * 109.47175 * 239.99699 * 2 1 3 32 32 H 1.09002 * 109.47173 * 119.99887 * 2 1 3 33 33 H 1.09004 * 110.24213 * 44.01257 * 4 3 2 34 34 H 1.08994 * 110.32479 * 282.04950 * 4 3 2 35 35 H 1.09001 * 109.47034 * 65.00453 * 7 5 4 36 36 H 1.08998 * 109.47671 * 304.99849 * 7 5 4 37 37 H 0.97000 * 120.00694 * 345.00602 * 8 7 5 38 38 H 1.08999 * 109.47549 * 269.99899 * 13 12 9 39 39 H 1.09002 * 109.46993 * 30.00124 * 13 12 9 40 40 H 1.09003 * 109.47290 * 149.99908 * 13 12 9 41 41 H 1.09001 * 109.47225 * 179.97438 * 16 14 12 42 42 H 1.08998 * 109.47413 * 300.00208 * 16 14 12 43 43 H 1.08997 * 109.47143 * 60.00037 * 16 14 12 44 44 H 0.97004 * 119.99485 * 179.72881 * 20 19 17 45 45 H 1.09002 * 110.48397 * 93.88082 * 25 5 4 46 46 H 1.08999 * 110.48284 * 216.51999 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3445 0.7485 6 1 2.9304 4.2518 1.3014 7 6 4.6601 3.0069 0.8831 8 7 5.4611 4.1874 0.5499 9 16 7.0652 4.2418 0.9579 10 8 7.1458 3.8509 2.3217 11 8 7.5604 5.4829 0.4745 12 7 7.8327 3.0609 0.0869 13 6 7.9618 1.7102 0.6392 14 6 8.3828 3.3669 -1.2361 15 1 8.1914 4.4129 -1.4759 16 6 9.8912 3.1116 -1.2328 17 6 7.7265 2.4870 -2.2686 18 1 6.9752 1.7712 -1.9694 19 6 8.0853 2.5959 -3.5955 20 7 7.5086 1.8319 -4.4974 21 14 9.3842 3.8346 -4.1132 22 1 10.7246 3.1975 -4.0602 23 1 9.1079 4.2918 -5.4988 24 1 9.3528 4.9990 -3.1922 25 6 2.7686 3.4756 -0.7379 26 6 2.2707 2.0965 -1.1098 27 8 2.1204 1.6947 -2.2442 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.8327 1.5533 1.9382 34 1 1.3643 2.5305 1.6445 35 1 4.9111 2.1936 0.2022 36 1 4.8721 2.7014 1.9077 37 1 5.0519 4.9373 0.0904 38 1 8.8884 1.6375 1.2087 39 1 7.1155 1.5031 1.2942 40 1 7.9776 0.9849 -0.1743 41 1 10.3003 3.3388 -2.2172 42 1 10.3659 3.7479 -0.4859 43 1 10.0821 2.0656 -0.9931 44 1 7.7582 1.9112 -5.4314 45 1 1.9733 4.2121 -0.8529 46 1 3.6316 3.7465 -1.3461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593642029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:17 Heat of formation + Delta-G solvation = -131.623568 kcal Electronic energy + Delta-G solvation = -28649.311914 eV Core-core repulsion = 24699.905984 eV Total energy + Delta-G solvation = -3949.405930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52965 -38.40291 -38.13197 -37.94482 -36.91066 -36.43042 -34.52320 -34.08124 -31.80859 -30.52417 -28.94550 -27.30131 -26.97923 -26.26975 -24.21534 -22.72543 -21.86631 -20.64325 -20.06244 -19.05706 -18.55175 -18.30105 -17.96536 -17.49836 -17.15485 -16.59042 -16.45399 -15.92889 -15.36142 -15.29455 -15.01253 -14.89306 -14.56235 -14.48879 -14.33570 -14.14288 -14.08758 -13.85399 -13.59750 -13.47574 -13.21567 -13.13956 -13.11270 -12.95439 -12.90437 -12.72820 -12.57881 -12.31989 -12.25218 -12.03151 -11.99259 -11.84937 -11.47673 -11.35189 -10.83617 -10.75837 -10.45210 -9.77002 -9.67604 -8.29223 -6.33739 -0.30897 1.29678 1.38165 1.45892 1.58125 1.94022 2.11512 2.30750 2.60571 3.05750 3.36864 3.41209 3.47174 3.70743 3.94344 3.98584 4.15123 4.29142 4.36542 4.45230 4.50811 4.51595 4.60400 4.65431 4.67310 4.67682 4.69363 4.83082 4.85742 4.87494 4.88347 5.00152 5.05087 5.11653 5.20400 5.25208 5.27966 5.47485 5.53457 5.67716 5.80659 6.14319 6.15613 6.32985 6.72080 7.19051 7.31825 8.86230 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.004664 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.321313 B = 6001.500563 C = 7467.511495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 N -0.618 5.618 4 C 0.108 3.892 5 C -0.093 4.093 6 H 0.144 0.856 7 C 0.120 3.880 8 N -1.117 6.117 9 S 2.801 3.199 10 O -0.996 6.996 11 O -1.013 7.013 12 N -0.993 5.993 13 C 0.098 3.902 14 C 0.242 3.758 15 H 0.046 0.954 16 C -0.160 4.160 17 C -0.514 4.514 18 H 0.051 0.949 19 C 0.022 3.978 20 N -0.940 5.940 21 Si 0.928 3.072 22 H -0.261 1.261 23 H -0.300 1.300 24 H -0.250 1.250 25 C -0.154 4.154 26 C 0.501 3.499 27 O -0.592 6.592 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.422 0.578 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.265 0.735 45 H 0.131 0.869 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 0.747 17.196 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 N -0.352 5.352 4 C -0.014 4.014 5 C -0.113 4.113 6 H 0.162 0.838 7 C -0.006 4.006 8 N -0.880 5.880 9 S 2.810 3.190 10 O -0.979 6.979 11 O -0.998 6.998 12 N -0.834 5.834 13 C -0.048 4.048 14 C 0.136 3.864 15 H 0.063 0.937 16 C -0.218 4.218 17 C -0.553 4.553 18 H 0.069 0.931 19 C -0.176 4.176 20 N -0.580 5.580 21 Si 0.756 3.244 22 H -0.186 1.186 23 H -0.228 1.228 24 H -0.174 1.174 25 C -0.194 4.194 26 C 0.290 3.710 27 O -0.473 6.473 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.258 0.742 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.149 0.851 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.931 0.824 17.214 20.408 hybrid contribution 0.294 0.147 -1.909 1.937 sum -10.636 0.971 15.306 18.664 Atomic orbital electron populations 1.22078 0.94635 1.03171 1.01846 1.21503 0.95263 0.80742 1.03339 1.48508 1.64979 1.14162 1.07508 1.22419 1.00745 0.91923 0.86316 1.22423 0.92571 1.01575 0.94697 0.83778 1.21469 0.91262 0.86332 1.01544 1.55683 1.28459 1.27521 1.76346 1.01141 0.73007 0.72046 0.72829 1.93545 1.86909 1.83983 1.33495 1.93547 1.79704 1.44270 1.82245 1.57445 1.71505 1.24548 1.29857 1.21427 1.01971 0.82971 0.98391 1.18805 0.91401 0.96132 0.80022 0.93675 1.22369 0.97083 1.02480 0.99905 1.21360 1.22009 1.20665 0.91276 0.93099 1.25636 0.98155 0.97095 0.96748 1.70033 1.44520 1.41215 1.02230 0.86175 0.80290 0.80967 0.76988 1.18643 1.22762 1.17427 1.22506 1.03798 0.94680 0.98459 1.21551 0.76092 0.89169 0.84179 1.90712 1.55970 1.76720 1.23929 0.89994 0.90485 0.95031 0.93142 0.87088 0.87580 0.87148 0.93646 0.87906 0.74207 0.91897 0.90450 0.91582 0.94093 0.92399 0.91426 0.92603 0.85143 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.24 71.98 0.74 -1.72 16 2 C 0.11 2.12 6.65 86.38 0.57 2.70 16 3 N -0.62 -13.03 2.93 -818.00 -2.40 -15.43 16 4 C 0.11 1.25 6.90 86.83 0.60 1.85 16 5 C -0.09 -1.36 3.21 -9.74 -0.03 -1.39 16 6 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 7 C 0.12 2.54 5.53 86.38 0.48 3.02 16 8 N -1.12 -28.91 5.88 -187.49 -1.10 -30.01 16 9 S 2.80 94.16 6.09 -56.49 -0.34 93.81 16 10 O -1.00 -33.77 16.68 -128.00 -2.14 -35.91 16 11 O -1.01 -40.64 16.70 -128.00 -2.14 -42.78 16 12 N -0.99 -37.05 3.12 -520.44 -1.62 -38.68 16 13 C 0.10 3.11 9.28 127.77 1.19 4.30 16 14 C 0.24 10.87 2.21 44.24 0.10 10.97 16 15 H 0.05 2.15 5.97 -2.38 -0.01 2.13 16 16 C -0.16 -6.52 8.68 71.98 0.62 -5.90 16 17 C -0.51 -27.39 8.57 25.60 0.22 -27.17 16 18 H 0.05 2.97 7.58 -2.91 -0.02 2.95 16 19 C 0.02 1.27 5.45 84.66 0.46 1.73 16 20 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 21 Si 0.93 44.05 24.38 68.60 1.67 45.72 16 22 H -0.26 -11.62 6.87 99.48 0.68 -10.94 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 25 C -0.15 -3.45 6.25 30.58 0.19 -3.26 16 26 C 0.50 15.28 8.02 87.89 0.71 15.98 16 27 O -0.59 -25.51 17.60 -3.02 -0.05 -25.56 16 28 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 1.28 7.93 -2.39 -0.02 1.26 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 0.82 7.88 -2.38 -0.02 0.80 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 1.22 8.12 -2.39 -0.02 1.21 16 36 H 0.10 1.76 7.71 -2.39 -0.02 1.75 16 37 H 0.42 9.56 8.37 -96.75 -0.81 8.75 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 40 H 0.07 2.35 7.02 -2.39 -0.02 2.33 16 41 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.60 7.67 -2.39 -0.02 2.58 16 44 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.09 2.43 7.60 -2.39 -0.02 2.41 16 Total: -1.00 -82.58 377.33 -1.89 -84.47 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.09 Total: 20.85 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 5.84 Total: 1.11 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -4.83 Total: -141.72 kcal Atomic # 8 Polarization: -99.92 SS G_CDS: -4.33 Total: -104.25 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Atomic # 16 Polarization: 94.16 SS G_CDS: -0.34 Total: 93.81 kcal Total: -82.58 -1.89 -84.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.152 kcal (2) G-P(sol) polarization free energy of solvation -82.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds