Wall clock time and date at job start Tue Mar 31 2020 17:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47141 * 2 1 4 4 N 1.40082 * 126.03931 * 269.97313 * 3 2 1 5 5 C 1.30838 * 108.20671 * 179.73603 * 4 3 2 6 6 C 1.50705 * 125.89816 * 180.25757 * 5 4 3 7 7 C 1.39865 * 108.20102 * 0.44476 * 5 4 3 8 8 C 1.50704 * 126.03847 * 179.81923 * 7 5 4 9 9 C 1.50703 * 109.46930 * 269.68713 * 8 7 5 10 10 O 1.21290 * 119.99977 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00516 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00694 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46342 * 324.99575 * 12 11 9 14 14 C 1.50701 * 109.47260 * 204.99997 * 12 11 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.52998 * 109.47185 * 84.99510 * 12 11 9 23 23 F 1.39901 * 109.47038 * 180.02562 * 22 12 11 24 24 F 1.39903 * 109.47186 * 299.99909 * 22 12 11 25 25 F 1.39898 * 109.47149 * 60.00364 * 22 12 11 26 26 C 1.34954 * 126.03702 * 89.99573 * 3 2 1 27 27 C 1.50698 * 126.12645 * 359.96340 * 26 3 2 28 28 H 1.09003 * 109.47395 * 59.99985 * 1 2 3 29 29 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47380 * 300.00124 * 1 2 3 31 31 H 1.08996 * 109.47135 * 239.99939 * 2 1 3 32 32 H 1.09003 * 109.46991 * 119.99659 * 2 1 3 33 33 H 1.08993 * 109.46923 * 270.21595 * 6 5 4 34 34 H 1.09001 * 109.47013 * 30.21475 * 6 5 4 35 35 H 1.09002 * 109.46963 * 150.21914 * 6 5 4 36 36 H 1.09003 * 109.47417 * 149.69120 * 8 7 5 37 37 H 1.08994 * 109.47506 * 29.68001 * 8 7 5 38 38 H 0.97006 * 119.99365 * 359.97438 * 11 9 8 39 39 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47041 * 270.01971 * 27 26 3 41 41 H 1.08996 * 109.47224 * 30.02393 * 27 26 3 42 42 H 1.08997 * 109.47266 * 150.02248 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 -1.1327 5 6 2.7031 3.3343 -0.7321 6 6 3.1014 4.4822 -1.6236 7 6 2.7116 3.3408 0.6665 8 6 3.1198 4.4951 1.5453 9 6 4.5954 4.4059 1.8385 10 8 5.2508 3.4944 1.3795 11 7 5.1864 5.3382 2.6116 12 6 6.6209 5.2519 2.8962 13 1 6.9117 4.2048 2.9824 14 6 6.9202 5.9644 4.1900 15 1 6.1217 6.4350 4.7445 16 6 8.2142 6.0209 4.6624 17 7 9.1865 5.4482 3.9870 18 14 8.5863 6.9109 6.2621 19 1 8.4777 5.9577 7.3957 20 1 9.9632 7.4650 6.2116 21 1 7.6140 8.0173 6.4509 22 6 7.4069 5.9076 1.7591 23 9 8.7768 5.8246 2.0307 24 9 7.1291 5.2460 0.5581 25 9 7.0336 7.2513 1.6485 26 6 2.2829 2.1297 1.0913 27 6 2.1282 1.6948 2.5258 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1672 4.4191 -1.8428 34 1 2.5356 4.4329 -2.5540 35 1 2.8894 5.4247 -1.1188 36 1 2.5606 4.4556 2.4801 37 1 2.9072 5.4339 1.0340 38 1 4.6621 6.0670 2.9790 39 1 10.0969 5.4883 4.3193 40 1 1.1221 1.9327 2.8711 41 1 2.2929 0.6199 2.5994 42 1 2.8576 2.2174 3.1446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:08 Heat of formation + Delta-G solvation = -110.771581 kcal Electronic energy + Delta-G solvation = -30108.983705 eV Core-core repulsion = 25483.181293 eV Total energy + Delta-G solvation = -4625.802412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.30395 -45.95794 -45.57225 -41.28724 -38.71362 -35.07594 -34.52961 -32.84357 -32.50103 -31.45921 -29.45831 -28.08756 -27.19285 -25.75221 -24.51653 -22.99657 -21.59669 -20.02475 -19.35942 -19.18743 -17.43103 -16.81823 -16.60815 -16.56910 -16.23688 -15.74206 -15.11905 -14.91951 -14.69888 -14.55769 -13.95284 -13.67936 -13.26418 -13.18640 -13.08940 -12.95391 -12.89579 -12.84631 -12.44602 -12.40751 -12.35510 -12.23688 -12.10796 -11.94282 -11.91134 -11.78314 -11.69834 -11.44640 -11.39757 -11.16345 -10.83604 -10.72762 -10.39376 -10.25911 -9.64090 -9.13625 -8.86110 -8.70023 -8.18363 -8.05262 -6.22001 -4.45863 2.01077 2.56827 2.89230 3.18343 3.25161 3.28078 3.36248 4.03507 4.24949 4.42169 4.61705 4.69019 4.79025 4.91033 4.94896 4.96917 5.11393 5.26604 5.32662 5.41308 5.45649 5.48932 5.53454 5.63732 5.74688 5.77158 5.86502 5.90569 5.91632 5.93392 6.09024 6.24458 6.27685 6.36225 6.88066 7.00262 7.19845 7.26183 7.50690 7.65197 7.93712 8.42266 8.52885 9.02089 9.22499 10.69372 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.003387 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.614975 B = 8265.926210 C = 8991.532203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.373 5.373 4 N -0.303 5.303 5 C 0.093 3.907 6 C -0.073 4.073 7 C -0.210 4.210 8 C -0.061 4.061 9 C 0.503 3.497 10 O -0.528 6.528 11 N -0.716 5.716 12 C 0.246 3.754 13 H 0.083 0.917 14 C -0.551 4.551 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.914 3.086 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.417 3.583 23 F -0.138 7.138 24 F -0.217 7.217 25 F -0.210 7.210 26 C 0.097 3.903 27 C -0.092 4.092 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.397 0.603 39 H 0.267 0.733 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 -5.143 -3.444 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 N -0.155 5.155 4 N -0.125 5.125 5 C -0.073 4.073 6 C -0.132 4.132 7 C -0.222 4.222 8 C -0.102 4.102 9 C 0.288 3.712 10 O -0.403 6.403 11 N -0.367 5.367 12 C 0.140 3.860 13 H 0.100 0.900 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.145 4.145 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.360 3.640 23 F -0.119 7.119 24 F -0.199 7.199 25 F -0.192 7.192 26 C -0.030 4.030 27 C -0.150 4.150 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.370 -6.756 -4.819 17.468 hybrid contribution 0.470 1.364 1.398 2.009 sum -14.901 -5.392 -3.421 16.211 Atomic orbital electron populations 1.22177 0.94573 1.02738 1.03118 1.21562 0.94869 0.78458 1.04195 1.48315 1.52280 1.11645 1.03307 1.77230 1.24146 1.03508 1.07638 1.22081 0.97766 0.94056 0.93431 1.20177 1.02270 0.93290 0.97466 1.19012 1.13969 0.96097 0.93080 1.19918 0.93419 0.97313 0.99555 1.20654 0.89546 0.82404 0.78575 1.90700 1.65550 1.33692 1.50377 1.46106 1.10676 1.28471 1.51397 1.19659 0.75966 0.99584 0.90793 0.89966 1.20889 0.94728 1.38239 1.04980 0.90481 1.25090 0.95792 0.95490 0.98099 1.70410 1.01006 1.40303 1.35565 0.86233 0.77940 0.79627 0.82145 1.20243 1.20843 1.19505 1.23160 0.81688 0.76052 0.83073 1.93403 1.30804 1.95620 1.92091 1.93073 1.93992 1.81155 1.51703 1.92982 1.91854 1.37777 1.96572 1.20698 1.00067 0.91661 0.90541 1.20449 1.03119 1.02027 0.89406 0.91724 0.90754 0.92080 0.88967 0.89197 0.90193 0.91262 0.90628 0.88891 0.88665 0.76917 0.92176 0.90446 0.91285 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.24 37.16 0.38 -0.90 16 2 C 0.13 1.27 6.96 -4.05 -0.03 1.24 16 3 N -0.37 -5.27 3.61 -57.15 -0.21 -5.48 16 4 N -0.30 -5.01 12.58 33.67 0.42 -4.58 16 5 C 0.09 1.50 7.22 -82.40 -0.59 0.91 16 6 C -0.07 -0.99 10.26 36.01 0.37 -0.62 16 7 C -0.21 -3.29 4.59 -105.05 -0.48 -3.77 16 8 C -0.06 -0.87 5.61 -29.03 -0.16 -1.03 16 9 C 0.50 9.68 7.36 -10.99 -0.08 9.60 16 10 O -0.53 -12.49 14.61 5.55 0.08 -12.40 16 11 N -0.72 -14.22 4.98 -54.93 -0.27 -14.49 16 12 C 0.25 6.05 2.21 -69.08 -0.15 5.90 16 13 H 0.08 2.29 7.58 -51.93 -0.39 1.90 16 14 C -0.55 -13.89 8.47 -34.44 -0.29 -14.18 16 15 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 16 C 0.06 1.66 5.20 -17.82 -0.09 1.56 16 17 N -0.84 -23.04 9.49 55.43 0.53 -22.51 16 18 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 C 0.42 10.71 2.80 37.16 0.10 10.82 16 23 F -0.14 -3.86 12.90 2.25 0.03 -3.83 16 24 F -0.22 -5.58 15.68 2.25 0.04 -5.54 16 25 F -0.21 -5.16 16.94 2.25 0.04 -5.13 16 26 C 0.10 1.39 6.93 -82.26 -0.57 0.82 16 27 C -0.09 -0.98 9.72 36.00 0.35 -0.63 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.71 7.05 -51.93 -0.37 0.34 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16 36 H 0.09 1.06 7.77 -51.93 -0.40 0.66 16 37 H 0.10 1.16 7.25 -51.93 -0.38 0.78 16 38 H 0.40 6.67 8.54 -40.82 -0.35 6.32 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.64 7.08 -51.93 -0.37 0.27 16 42 H 0.09 1.03 7.77 -51.93 -0.40 0.62 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -33.50 362.55 -5.69 -39.19 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.54 Total: 4.70 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.25 Total: 9.70 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.47 Total: -47.07 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 9 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.50 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.50 -5.69 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.580 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds