Wall clock time and date at job start Tue Mar 31 2020 17:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47141 * 2 1 4 4 N 1.40082 * 126.03931 * 269.97313 * 3 2 1 5 5 C 1.30838 * 108.20671 * 179.73603 * 4 3 2 6 6 C 1.50705 * 125.89816 * 180.25757 * 5 4 3 7 7 C 1.39865 * 108.20102 * 0.44476 * 5 4 3 8 8 C 1.50704 * 126.03847 * 179.81923 * 7 5 4 9 9 C 1.50703 * 109.46930 * 269.68713 * 8 7 5 10 10 O 1.21290 * 119.99977 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00516 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00694 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46342 * 324.99575 * 12 11 9 14 14 C 1.50701 * 109.47260 * 204.99997 * 12 11 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.52998 * 109.47185 * 84.99510 * 12 11 9 23 23 F 1.39901 * 109.47038 * 180.02562 * 22 12 11 24 24 F 1.39903 * 109.47186 * 299.99909 * 22 12 11 25 25 F 1.39898 * 109.47149 * 60.00364 * 22 12 11 26 26 C 1.34954 * 126.03702 * 89.99573 * 3 2 1 27 27 C 1.50698 * 126.12645 * 359.96340 * 26 3 2 28 28 H 1.09003 * 109.47395 * 59.99985 * 1 2 3 29 29 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47380 * 300.00124 * 1 2 3 31 31 H 1.08996 * 109.47135 * 239.99939 * 2 1 3 32 32 H 1.09003 * 109.46991 * 119.99659 * 2 1 3 33 33 H 1.08993 * 109.46923 * 270.21595 * 6 5 4 34 34 H 1.09001 * 109.47013 * 30.21475 * 6 5 4 35 35 H 1.09002 * 109.46963 * 150.21914 * 6 5 4 36 36 H 1.09003 * 109.47417 * 149.69120 * 8 7 5 37 37 H 1.08994 * 109.47506 * 29.68001 * 8 7 5 38 38 H 0.97006 * 119.99365 * 359.97438 * 11 9 8 39 39 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47041 * 270.01971 * 27 26 3 41 41 H 1.08996 * 109.47224 * 30.02393 * 27 26 3 42 42 H 1.08997 * 109.47266 * 150.02248 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 -1.1327 5 6 2.7031 3.3343 -0.7321 6 6 3.1014 4.4822 -1.6236 7 6 2.7116 3.3408 0.6665 8 6 3.1198 4.4951 1.5453 9 6 4.5954 4.4059 1.8385 10 8 5.2508 3.4944 1.3795 11 7 5.1864 5.3382 2.6116 12 6 6.6209 5.2519 2.8962 13 1 6.9117 4.2048 2.9824 14 6 6.9202 5.9644 4.1900 15 1 6.1217 6.4350 4.7445 16 6 8.2142 6.0209 4.6624 17 7 9.1865 5.4482 3.9870 18 14 8.5863 6.9109 6.2621 19 1 8.4777 5.9577 7.3957 20 1 9.9632 7.4650 6.2116 21 1 7.6140 8.0173 6.4509 22 6 7.4069 5.9076 1.7591 23 9 8.7768 5.8246 2.0307 24 9 7.1291 5.2460 0.5581 25 9 7.0336 7.2513 1.6485 26 6 2.2829 2.1297 1.0913 27 6 2.1282 1.6948 2.5258 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.1672 4.4191 -1.8428 34 1 2.5356 4.4329 -2.5540 35 1 2.8894 5.4247 -1.1188 36 1 2.5606 4.4556 2.4801 37 1 2.9072 5.4339 1.0340 38 1 4.6621 6.0670 2.9790 39 1 10.0969 5.4883 4.3193 40 1 1.1221 1.9327 2.8711 41 1 2.2929 0.6199 2.5994 42 1 2.8576 2.2174 3.1446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:06 Heat of formation + Delta-G solvation = -132.552774 kcal Electronic energy + Delta-G solvation = -30109.928208 eV Core-core repulsion = 25483.181293 eV Total energy + Delta-G solvation = -4626.746915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -50.37921 -48.01304 -47.69647 -42.36410 -40.29853 -36.45854 -35.88727 -34.40521 -33.88543 -32.42392 -30.81852 -29.54896 -28.15939 -26.92132 -26.48172 -23.97706 -23.30855 -21.60164 -20.55801 -20.27185 -19.23608 -18.81591 -18.61805 -18.17206 -17.47550 -17.35931 -16.79558 -16.22206 -16.05148 -15.60828 -15.35143 -14.94443 -14.89287 -14.73477 -14.44073 -14.36044 -14.25140 -14.20310 -14.12617 -14.01877 -13.94190 -13.82181 -13.76066 -13.25365 -13.04963 -13.00654 -12.86169 -12.73232 -12.60667 -12.55444 -12.43025 -12.18681 -12.13571 -11.54710 -11.36665 -10.74895 -10.64834 -9.95281 -9.93233 -9.16813 -8.18018 -6.48644 0.94553 1.48191 1.49695 1.60609 1.62826 1.72148 1.83959 2.34771 2.52295 2.65091 2.97546 3.54715 3.76565 3.80484 3.90072 4.03104 4.04663 4.11308 4.15121 4.25663 4.30527 4.36083 4.48009 4.61089 4.68493 4.72138 4.77438 4.79593 4.83976 4.98339 5.02226 5.07283 5.19835 5.21177 5.32647 5.50766 5.61737 5.69764 5.80201 6.24003 6.57061 6.83067 6.88415 7.21333 7.53735 8.74398 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.003387 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.614975 B = 8265.926210 C = 8991.532203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.374 5.374 4 N -0.337 5.337 5 C 0.072 3.928 6 C -0.072 4.072 7 C -0.241 4.241 8 C -0.046 4.046 9 C 0.502 3.498 10 O -0.577 6.577 11 N -0.708 5.708 12 C 0.254 3.746 13 H 0.042 0.958 14 C -0.558 4.558 15 H 0.095 0.905 16 C 0.012 3.988 17 N -0.877 5.877 18 Si 0.982 3.018 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.256 1.256 22 C 0.412 3.588 23 F -0.154 7.154 24 F -0.220 7.220 25 F -0.202 7.202 26 C 0.096 3.904 27 C -0.090 4.090 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.267 0.733 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 -4.693 -1.721 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.002 4.002 3 N -0.157 5.157 4 N -0.160 5.160 5 C -0.093 4.093 6 C -0.130 4.130 7 C -0.252 4.252 8 C -0.087 4.087 9 C 0.290 3.710 10 O -0.455 6.455 11 N -0.360 5.360 12 C 0.146 3.854 13 H 0.060 0.940 14 C -0.595 4.595 15 H 0.113 0.887 16 C -0.192 4.192 17 N -0.511 5.511 18 Si 0.806 3.194 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.180 1.180 22 C 0.356 3.644 23 F -0.135 7.135 24 F -0.202 7.202 25 F -0.184 7.184 26 C -0.033 4.033 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.702 -6.293 -3.102 19.042 hybrid contribution 1.156 1.119 0.802 1.798 sum -16.546 -5.174 -2.300 17.488 Atomic orbital electron populations 1.22104 0.92712 1.04305 1.02401 1.21969 0.96407 0.76644 1.05187 1.48712 1.51564 1.12663 1.02757 1.77143 1.25380 1.04174 1.09315 1.22500 0.97924 0.94518 0.94368 1.20217 1.01043 0.93590 0.98177 1.19293 1.15480 0.97353 0.93094 1.19921 0.89310 0.98148 1.01310 1.21598 0.91454 0.80973 0.76963 1.90680 1.67168 1.35607 1.52067 1.45976 1.08844 1.29455 1.51723 1.19229 0.78497 0.97092 0.90583 0.94032 1.21263 0.95291 1.37877 1.05075 0.88696 1.26024 0.95717 0.96128 1.01380 1.70553 1.01324 1.41799 1.37437 0.85176 0.77547 0.78745 0.77966 1.19519 1.21368 1.17997 1.23388 0.81225 0.76449 0.83333 1.93372 1.32138 1.95738 1.92233 1.93064 1.93936 1.81282 1.51953 1.92981 1.91701 1.37189 1.96563 1.21295 0.98605 0.91357 0.92010 1.20568 1.04556 1.02805 0.86853 0.93447 0.88012 0.91680 0.89160 0.87064 0.92204 0.89923 0.88771 0.85426 0.86232 0.74880 0.92352 0.87362 0.89811 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.24 71.98 0.74 -1.33 16 2 C 0.12 2.11 6.96 86.38 0.60 2.71 16 3 N -0.37 -10.27 3.61 -334.71 -1.21 -11.47 16 4 N -0.34 -11.19 12.58 -47.38 -0.60 -11.78 16 5 C 0.07 2.33 7.22 43.10 0.31 2.64 16 6 C -0.07 -1.94 10.26 71.24 0.73 -1.21 16 7 C -0.24 -7.27 4.59 -20.14 -0.09 -7.36 16 8 C -0.05 -1.22 5.61 29.10 0.16 -1.06 16 9 C 0.50 19.01 7.36 87.66 0.64 19.66 16 10 O -0.58 -27.84 14.61 -3.06 -0.04 -27.88 16 11 N -0.71 -27.49 4.98 -446.09 -2.22 -29.71 16 12 C 0.25 12.60 2.21 44.24 0.10 12.70 16 13 H 0.04 2.42 7.58 -2.38 -0.02 2.40 16 14 C -0.56 -27.72 8.47 25.60 0.22 -27.50 16 15 H 0.10 4.27 7.74 -2.91 -0.02 4.24 16 16 C 0.01 0.64 5.20 84.65 0.44 1.08 16 17 N -0.88 -48.87 9.49 21.45 0.20 -48.66 16 18 Si 0.98 40.07 29.54 68.60 2.03 42.10 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 C 0.41 21.50 2.80 71.98 0.20 21.70 16 23 F -0.15 -8.79 12.90 44.97 0.58 -8.21 16 24 F -0.22 -11.58 15.68 44.97 0.71 -10.88 16 25 F -0.20 -9.87 16.94 44.97 0.76 -9.11 16 26 C 0.10 2.58 6.93 41.40 0.29 2.87 16 27 C -0.09 -1.68 9.72 71.24 0.69 -0.99 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 1.49 7.05 -2.39 -0.02 1.47 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.09 7.25 -2.39 -0.02 2.07 16 36 H 0.13 2.47 7.77 -2.39 -0.02 2.45 16 37 H 0.12 2.57 7.25 -2.39 -0.02 2.55 16 38 H 0.41 13.02 8.54 -92.70 -0.79 12.23 16 39 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.31 7.08 -2.39 -0.02 1.29 16 42 H 0.08 1.63 7.77 -2.39 -0.02 1.61 16 Total: -1.00 -74.74 362.55 5.51 -69.23 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.28 Total: 22.48 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 5.03 Total: 23.91 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -3.82 Total: -101.63 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.04 Total: -27.88 kcal Atomic # 9 Polarization: -30.25 SS G_CDS: 2.05 Total: -28.20 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -74.74 5.51 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.325 kcal (2) G-P(sol) polarization free energy of solvation -74.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds