Wall clock time and date at job start Tue Mar 31 2020 19:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00201 * 2 1 4 4 O 1.20827 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00246 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.78762 * 356.16981 * 5 3 2 7 7 C 1.53243 * 109.62895 * 116.65520 * 5 3 2 8 8 N 1.46900 * 109.34337 * 173.54297 * 7 5 3 9 9 C 1.39076 * 111.00241 * 172.74752 * 8 7 5 10 10 C 1.38750 * 119.65681 * 179.72411 * 9 8 7 11 11 C 1.40773 * 118.66794 * 179.77905 * 10 9 8 12 12 C 1.41559 * 120.99707 * 180.21756 * 11 10 9 13 13 H 1.07993 * 119.99949 * 208.17304 * 12 11 10 14 14 C 1.40028 * 119.99377 * 28.16981 * 12 11 10 15 15 N 1.30744 * 120.00161 * 11.59290 * 14 12 11 16 16 Si 1.86800 * 119.99524 * 191.59245 * 14 12 11 17 17 H 1.48498 * 109.47427 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46971 * 210.00086 * 16 14 12 19 19 H 1.48499 * 109.47164 * 330.00017 * 16 14 12 20 20 C 1.41190 * 118.01533 * 0.48392 * 11 10 9 21 21 C 1.36559 * 119.14083 * 359.75388 * 20 11 10 22 22 N 1.32092 * 121.27170 * 0.02562 * 21 20 11 23 23 C 1.46902 * 111.26437 * 296.89759 * 8 7 5 24 24 C 1.52775 * 109.42773 * 62.95876 * 23 8 7 25 25 N 1.47074 * 108.76887 * 306.42819 * 24 23 8 26 26 C 1.34776 * 120.87957 * 231.11840 * 25 24 23 27 27 C 1.50692 * 120.00119 * 352.94596 * 26 25 24 28 28 O 1.21279 * 119.99814 * 172.94741 * 26 25 24 29 29 H 1.09007 * 109.46855 * 60.00141 * 1 2 3 30 30 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47447 * 300.00146 * 1 2 3 32 32 H 1.09000 * 109.49490 * 293.49983 * 7 5 3 33 33 H 1.08999 * 109.49502 * 53.57939 * 7 5 3 34 34 H 1.07997 * 120.66646 * 359.97438 * 10 9 8 35 35 H 0.97002 * 119.99729 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.42997 * 179.73664 * 20 11 10 37 37 H 1.08004 * 119.36155 * 179.97438 * 21 20 11 38 38 H 1.09001 * 109.49224 * 183.06762 * 23 8 7 39 39 H 1.09004 * 109.49246 * 303.11316 * 23 8 7 40 40 H 1.08999 * 109.55621 * 186.61056 * 24 23 8 41 41 H 1.09006 * 109.45183 * 66.18386 * 24 23 8 42 42 H 1.08996 * 109.47502 * 354.47778 * 27 26 25 43 43 H 1.09003 * 109.47611 * 114.47882 * 27 26 25 44 44 H 1.09007 * 109.47407 * 234.47759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9883 0.2722 0.0695 7 6 4.0470 1.9481 -1.2893 8 7 5.4984 2.1618 -1.2150 9 6 5.9975 2.6210 -2.4291 10 6 7.3530 2.8882 -2.5573 11 6 7.8365 3.3477 -3.7970 12 6 9.2108 3.6310 -3.9838 13 1 9.5159 4.3710 -4.7088 14 6 10.1746 2.9519 -3.2283 15 7 9.8334 1.9065 -2.5211 16 14 11.9477 3.5395 -3.2310 17 1 12.1444 4.5247 -2.1375 18 1 12.8534 2.3813 -3.0226 19 1 12.2550 4.1798 -4.5352 20 6 6.9089 3.5230 -4.8469 21 6 5.5918 3.2386 -4.6250 22 7 5.1726 2.8046 -3.4499 23 6 5.8466 3.0792 -0.1218 24 6 5.4385 2.4575 1.2128 25 7 4.0184 2.0809 1.1447 26 6 3.1532 2.4687 2.1026 27 6 3.6609 3.1612 3.3410 28 8 1.9661 2.2603 1.9679 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.8168 1.3083 -2.1413 33 1 3.5437 2.9077 -1.4082 34 1 8.0242 2.7435 -1.7237 35 1 10.5010 1.4362 -1.9975 36 1 7.2367 3.8778 -5.8129 37 1 4.8791 3.3718 -5.4255 38 1 6.9215 3.2598 -0.1269 39 1 5.3187 4.0232 -0.2571 40 1 5.5872 3.1820 2.0134 41 1 6.0440 1.5707 1.4004 42 1 4.7508 3.1721 3.3302 43 1 3.2876 4.1850 3.3637 44 1 3.3116 2.6274 4.2249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158017114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:11 Heat of formation + Delta-G solvation = -46.919536 kcal Electronic energy + Delta-G solvation = -29535.616502 eV Core-core repulsion = 25454.439663 eV Total energy + Delta-G solvation = -4081.176839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.13551 -39.42202 -38.91967 -37.23578 -36.06602 -34.67155 -33.90658 -32.16812 -30.73994 -29.83485 -28.99870 -27.89892 -26.39075 -26.05835 -24.23533 -22.20220 -21.68153 -21.20235 -20.34873 -18.90138 -18.05541 -17.44414 -17.01407 -16.54929 -15.92252 -15.84306 -15.49477 -15.32171 -15.11161 -14.89962 -14.42685 -14.19018 -13.91941 -13.61801 -13.49931 -13.22209 -13.15260 -12.75985 -12.61464 -12.40362 -12.13704 -12.01002 -11.97265 -11.71165 -11.48953 -11.35665 -11.28964 -11.09851 -10.89815 -10.63753 -10.30355 -10.13978 -10.07677 -9.52566 -9.37805 -9.16370 -8.67008 -8.14986 -8.03395 -7.08589 -6.85053 -4.68067 2.23120 2.49011 2.61625 2.74736 2.82266 2.98897 3.01925 3.13911 3.16571 3.81320 4.16247 4.48802 4.56974 4.83723 4.88140 4.90869 5.04475 5.19049 5.22168 5.24763 5.27983 5.30918 5.35948 5.50264 5.57012 5.60679 5.73627 5.76008 5.98984 6.02306 6.18596 6.28305 6.47072 6.61361 6.71250 6.78062 6.94594 7.07588 7.23533 7.27389 7.42049 7.55033 7.83035 7.96209 8.14166 8.20828 8.46485 8.66924 8.69634 9.45619 10.04719 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.003329 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.910570 B = 8408.358753 C = 9423.038443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.363 6.363 3 C 0.475 3.525 4 O -0.473 6.473 5 C 0.156 3.844 6 H 0.109 0.891 7 C 0.074 3.926 8 N -0.468 5.468 9 C 0.286 3.714 10 C -0.212 4.212 11 C 0.139 3.861 12 C -0.456 4.456 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.786 5.786 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.277 4.277 21 C 0.117 3.883 22 N -0.602 5.602 23 C 0.042 3.958 24 C 0.113 3.887 25 N -0.606 5.606 26 C 0.505 3.495 27 C -0.173 4.173 28 O -0.525 6.525 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.131 0.869 35 H 0.283 0.717 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 -1.597 10.191 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.356 6.356 5 C 0.051 3.949 6 H 0.127 0.873 7 C -0.054 4.054 8 N -0.187 5.187 9 C 0.061 3.939 10 C -0.237 4.237 11 C 0.131 3.869 12 C -0.487 4.487 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.411 5.411 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.301 4.301 21 C -0.036 4.036 22 N -0.322 5.322 23 C -0.085 4.085 24 C -0.009 4.009 25 N -0.343 5.343 26 C 0.294 3.706 27 C -0.232 4.232 28 O -0.402 6.402 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.702 -2.222 10.547 13.247 hybrid contribution 1.334 1.011 -0.388 1.719 sum -6.368 -1.211 10.158 12.050 Atomic orbital electron populations 1.23139 0.76538 1.02927 1.02467 1.86420 1.23261 1.33427 1.84860 1.22648 0.90704 0.81813 0.73332 1.90653 1.66490 1.36078 1.42424 1.20873 0.88132 0.97658 0.88273 0.87273 1.22019 0.88204 1.01234 0.93977 1.59214 1.11777 1.44340 1.03368 1.19266 0.90846 0.95275 0.88469 1.21622 0.92037 1.10446 0.99570 1.17703 0.93068 0.86560 0.89584 1.19596 0.90222 1.19922 1.19008 0.90085 1.25945 1.01720 0.93374 0.93238 1.69768 1.36631 1.13247 1.21433 0.86235 0.80922 0.79225 0.79935 1.19197 1.20143 1.18577 1.21650 0.94807 1.14232 0.99404 1.21343 0.93787 0.95562 0.92953 1.67137 1.38690 1.24676 1.01668 1.22556 1.02999 0.93547 0.89408 1.22008 0.79544 1.01271 0.98120 1.48182 1.10105 1.53997 1.22040 1.20947 0.86178 0.78821 0.84620 1.21977 1.03175 1.02448 0.95627 1.90858 1.15907 1.55454 1.77959 0.92243 0.88604 0.91917 0.88020 0.92430 0.85162 0.90608 0.88067 0.86203 0.87761 0.93804 0.88246 0.89585 0.89792 0.88767 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.36 -5.63 10.56 -39.25 -0.41 -6.05 16 3 C 0.48 8.26 4.95 36.00 0.18 8.44 16 4 O -0.47 -9.55 13.73 -27.19 -0.37 -9.92 16 5 C 0.16 2.46 3.50 -68.64 -0.24 2.22 16 6 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 7 C 0.07 1.34 4.08 -3.70 -0.02 1.33 16 8 N -0.47 -8.82 4.65 -173.24 -0.81 -9.63 16 9 C 0.29 6.47 6.41 -154.99 -0.99 5.48 16 10 C -0.21 -5.11 7.82 -38.44 -0.30 -5.41 16 11 C 0.14 3.51 5.57 -106.55 -0.59 2.91 16 12 C -0.46 -11.30 9.12 -37.65 -0.34 -11.65 16 13 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 14 C 0.08 1.78 5.27 -17.34 -0.09 1.69 16 15 N -0.79 -18.80 10.92 55.55 0.61 -18.19 16 16 Si 0.91 17.34 29.58 -169.99 -5.03 12.31 16 17 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 C -0.28 -6.50 9.85 -39.07 -0.38 -6.88 16 21 C 0.12 2.61 11.10 -18.05 -0.20 2.41 16 22 N -0.60 -13.91 8.64 -12.82 -0.11 -14.02 16 23 C 0.04 0.66 5.39 -3.94 -0.02 0.63 16 24 C 0.11 1.30 6.33 -3.84 -0.02 1.28 16 25 N -0.61 -8.52 3.02 -166.52 -0.50 -9.02 16 26 C 0.50 7.24 7.62 -10.99 -0.08 7.15 16 27 C -0.17 -1.57 9.98 36.00 0.36 -1.22 16 28 O -0.53 -9.64 12.33 -19.94 -0.25 -9.89 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.10 1.94 7.65 -51.93 -0.40 1.54 16 33 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 34 H 0.13 3.17 5.40 -52.49 -0.28 2.88 16 35 H 0.28 6.14 8.29 -40.82 -0.34 5.81 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 38 H 0.10 1.62 6.61 -51.93 -0.34 1.28 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.82 5.43 -51.93 -0.28 0.54 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.56 5.43 -51.93 -0.28 0.28 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -31.99 358.23 -8.94 -40.93 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.78 Total: 8.08 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -1.69 Total: 9.99 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.81 Total: -50.85 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.03 Total: -25.86 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.99 -8.94 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158017114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.990 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds