Wall clock time and date at job start Tue Mar 31 2020 19:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00201 * 2 1 4 4 O 1.20827 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00246 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.78762 * 356.16981 * 5 3 2 7 7 C 1.53243 * 109.62895 * 116.65520 * 5 3 2 8 8 N 1.46900 * 109.34337 * 173.54297 * 7 5 3 9 9 C 1.39076 * 111.00241 * 172.74752 * 8 7 5 10 10 C 1.38750 * 119.65681 * 179.72411 * 9 8 7 11 11 C 1.40773 * 118.66794 * 179.77905 * 10 9 8 12 12 C 1.41559 * 120.99707 * 180.21756 * 11 10 9 13 13 H 1.07993 * 119.99949 * 208.17304 * 12 11 10 14 14 C 1.40028 * 119.99377 * 28.16981 * 12 11 10 15 15 N 1.30744 * 120.00161 * 11.59290 * 14 12 11 16 16 Si 1.86800 * 119.99524 * 191.59245 * 14 12 11 17 17 H 1.48498 * 109.47427 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46971 * 210.00086 * 16 14 12 19 19 H 1.48499 * 109.47164 * 330.00017 * 16 14 12 20 20 C 1.41190 * 118.01533 * 0.48392 * 11 10 9 21 21 C 1.36559 * 119.14083 * 359.75388 * 20 11 10 22 22 N 1.32092 * 121.27170 * 0.02562 * 21 20 11 23 23 C 1.46902 * 111.26437 * 296.89759 * 8 7 5 24 24 C 1.52775 * 109.42773 * 62.95876 * 23 8 7 25 25 N 1.47074 * 108.76887 * 306.42819 * 24 23 8 26 26 C 1.34776 * 120.87957 * 231.11840 * 25 24 23 27 27 C 1.50692 * 120.00119 * 352.94596 * 26 25 24 28 28 O 1.21279 * 119.99814 * 172.94741 * 26 25 24 29 29 H 1.09007 * 109.46855 * 60.00141 * 1 2 3 30 30 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47447 * 300.00146 * 1 2 3 32 32 H 1.09000 * 109.49490 * 293.49983 * 7 5 3 33 33 H 1.08999 * 109.49502 * 53.57939 * 7 5 3 34 34 H 1.07997 * 120.66646 * 359.97438 * 10 9 8 35 35 H 0.97002 * 119.99729 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.42997 * 179.73664 * 20 11 10 37 37 H 1.08004 * 119.36155 * 179.97438 * 21 20 11 38 38 H 1.09001 * 109.49224 * 183.06762 * 23 8 7 39 39 H 1.09004 * 109.49246 * 303.11316 * 23 8 7 40 40 H 1.08999 * 109.55621 * 186.61056 * 24 23 8 41 41 H 1.09006 * 109.45183 * 66.18386 * 24 23 8 42 42 H 1.08996 * 109.47502 * 354.47778 * 27 26 25 43 43 H 1.09003 * 109.47611 * 114.47882 * 27 26 25 44 44 H 1.09007 * 109.47407 * 234.47759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9883 0.2722 0.0695 7 6 4.0470 1.9481 -1.2893 8 7 5.4984 2.1618 -1.2150 9 6 5.9975 2.6210 -2.4291 10 6 7.3530 2.8882 -2.5573 11 6 7.8365 3.3477 -3.7970 12 6 9.2108 3.6310 -3.9838 13 1 9.5159 4.3710 -4.7088 14 6 10.1746 2.9519 -3.2283 15 7 9.8334 1.9065 -2.5211 16 14 11.9477 3.5395 -3.2310 17 1 12.1444 4.5247 -2.1375 18 1 12.8534 2.3813 -3.0226 19 1 12.2550 4.1798 -4.5352 20 6 6.9089 3.5230 -4.8469 21 6 5.5918 3.2386 -4.6250 22 7 5.1726 2.8046 -3.4499 23 6 5.8466 3.0792 -0.1218 24 6 5.4385 2.4575 1.2128 25 7 4.0184 2.0809 1.1447 26 6 3.1532 2.4687 2.1026 27 6 3.6609 3.1612 3.3410 28 8 1.9661 2.2603 1.9679 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.8168 1.3083 -2.1413 33 1 3.5437 2.9077 -1.4082 34 1 8.0242 2.7435 -1.7237 35 1 10.5010 1.4362 -1.9975 36 1 7.2367 3.8778 -5.8129 37 1 4.8791 3.3718 -5.4255 38 1 6.9215 3.2598 -0.1269 39 1 5.3187 4.0232 -0.2571 40 1 5.5872 3.1820 2.0134 41 1 6.0440 1.5707 1.4004 42 1 4.7508 3.1721 3.3302 43 1 3.2876 4.1850 3.3637 44 1 3.3116 2.6274 4.2249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158017114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:09 Heat of formation + Delta-G solvation = -66.490959 kcal Electronic energy + Delta-G solvation = -29536.465183 eV Core-core repulsion = 25454.439663 eV Total energy + Delta-G solvation = -4082.025520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39853 -40.91310 -40.27024 -38.69317 -37.37976 -36.19151 -35.52670 -33.41328 -32.48843 -31.12932 -30.28343 -29.01694 -28.00120 -27.53682 -25.59122 -23.67615 -23.26047 -22.50827 -21.93146 -20.15533 -19.46139 -18.95066 -18.28375 -17.81041 -17.51465 -17.17193 -16.73032 -16.62136 -16.46120 -16.42474 -16.05379 -15.59797 -15.33094 -14.92885 -14.77447 -14.59938 -14.38522 -14.26906 -13.90644 -13.84398 -13.29844 -13.16055 -13.11459 -12.99892 -12.89711 -12.83548 -12.66865 -12.50742 -12.37989 -11.96048 -11.85833 -11.80371 -11.46048 -11.23449 -10.75563 -10.57165 -9.98514 -9.89205 -9.86205 -8.79813 -8.59968 -6.54970 0.84228 1.00249 1.00747 1.36851 1.43955 1.55892 1.57527 1.64103 1.98035 2.22711 2.68539 2.83436 3.39696 3.63529 3.67848 3.76458 3.82123 3.93352 3.98191 4.16272 4.22471 4.28196 4.31864 4.34676 4.51826 4.58319 4.62398 4.63136 4.69455 4.76035 4.88213 4.93718 5.01562 5.07402 5.10200 5.24768 5.26105 5.37953 5.52270 5.71014 5.88748 5.99343 6.20108 6.33656 6.65719 6.74427 6.84256 6.86152 7.05159 7.66165 8.31952 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.003329 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.910570 B = 8408.358753 C = 9423.038443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.366 6.366 3 C 0.476 3.524 4 O -0.507 6.507 5 C 0.158 3.842 6 H 0.126 0.874 7 C 0.089 3.911 8 N -0.469 5.469 9 C 0.286 3.714 10 C -0.228 4.228 11 C 0.111 3.889 12 C -0.487 4.487 13 H 0.080 0.920 14 C 0.041 3.959 15 N -0.811 5.811 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.262 1.262 20 C -0.295 4.295 21 C 0.114 3.886 22 N -0.616 5.616 23 C 0.041 3.959 24 C 0.120 3.880 25 N -0.607 5.607 26 C 0.495 3.505 27 C -0.163 4.163 28 O -0.570 6.570 29 H 0.057 0.943 30 H 0.136 0.864 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.125 0.875 35 H 0.292 0.708 36 H 0.112 0.888 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.031 0.969 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 -1.870 12.048 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.283 6.283 3 C 0.318 3.682 4 O -0.394 6.394 5 C 0.053 3.947 6 H 0.143 0.857 7 C -0.040 4.040 8 N -0.187 5.187 9 C 0.061 3.939 10 C -0.253 4.253 11 C 0.102 3.898 12 C -0.517 4.517 13 H 0.098 0.902 14 C -0.176 4.176 15 N -0.436 5.436 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.186 1.186 20 C -0.318 4.318 21 C -0.039 4.039 22 N -0.336 5.336 23 C -0.086 4.086 24 C -0.001 4.001 25 N -0.344 5.344 26 C 0.286 3.714 27 C -0.221 4.221 28 O -0.449 6.449 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.167 0.833 38 H 0.122 0.878 39 H 0.050 0.950 40 H 0.161 0.839 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.495 -2.507 12.420 14.239 hybrid contribution 0.860 1.043 -0.990 1.675 sum -5.635 -1.464 11.431 12.828 Atomic orbital electron populations 1.23429 0.74746 1.05403 1.01922 1.86407 1.25064 1.32436 1.84345 1.22902 0.91238 0.81805 0.72300 1.90631 1.67333 1.37223 1.44196 1.20765 0.87463 0.98501 0.87984 0.85669 1.21777 0.87467 0.99666 0.95051 1.59211 1.11909 1.44831 1.02761 1.19575 0.90662 0.94022 0.89675 1.21560 0.92546 1.11951 0.99257 1.18115 0.93944 0.87201 0.90492 1.19853 0.90803 1.20823 1.20258 0.90175 1.26744 1.05656 0.92967 0.92280 1.69809 1.38419 1.13805 1.21583 0.85143 0.75407 0.78892 0.79937 1.18257 1.19274 1.18644 1.21842 0.95216 1.15046 0.99723 1.21813 0.94135 0.94507 0.93486 1.67277 1.38917 1.25241 1.02159 1.22679 1.02868 0.92864 0.90176 1.22219 0.78183 1.02979 0.96734 1.48372 1.11113 1.53571 1.21315 1.21967 0.85598 0.78127 0.85664 1.22023 1.04947 1.02132 0.93016 1.90840 1.17954 1.57128 1.79007 0.92376 0.84602 0.92917 0.89578 0.95179 0.85739 0.89695 0.87024 0.83327 0.87837 0.95011 0.83944 0.87730 0.86808 0.88019 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 10.56 113.37 1.20 2.11 16 2 O -0.37 -11.25 10.56 -51.37 -0.54 -11.80 16 3 C 0.48 16.71 4.95 71.23 0.35 17.06 16 4 O -0.51 -21.03 13.73 30.03 0.41 -20.62 16 5 C 0.16 4.96 3.50 44.22 0.15 5.12 16 6 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 7 C 0.09 3.29 4.08 86.38 0.35 3.64 16 8 N -0.47 -17.74 4.65 -702.02 -3.27 -21.00 16 9 C 0.29 13.20 6.41 132.91 0.85 14.06 16 10 C -0.23 -11.26 7.82 23.01 0.18 -11.08 16 11 C 0.11 5.72 5.57 -21.12 -0.12 5.60 16 12 C -0.49 -24.51 9.12 23.52 0.21 -24.29 16 13 H 0.08 3.90 7.87 -2.91 -0.02 3.87 16 14 C 0.04 1.89 5.27 85.29 0.45 2.34 16 15 N -0.81 -38.75 10.92 21.84 0.24 -38.51 16 16 Si 0.99 34.86 29.58 68.60 2.03 36.89 16 17 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 18 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 20 C -0.29 -14.10 9.85 22.60 0.22 -13.88 16 21 C 0.11 5.13 11.10 84.26 0.94 6.07 16 22 N -0.62 -29.01 8.64 -194.47 -1.68 -30.69 16 23 C 0.04 1.23 5.39 86.23 0.47 1.70 16 24 C 0.12 2.44 6.33 86.19 0.55 2.98 16 25 N -0.61 -16.08 3.02 -799.15 -2.41 -18.49 16 26 C 0.49 13.34 7.62 87.65 0.67 14.01 16 27 C -0.16 -2.39 9.98 71.23 0.71 -1.68 16 28 O -0.57 -20.75 12.33 21.36 0.26 -20.49 16 29 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 30 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.36 8.13 -2.39 -0.02 1.35 16 32 H 0.09 3.39 7.65 -2.39 -0.02 3.37 16 33 H 0.03 1.27 8.01 -2.39 -0.02 1.25 16 34 H 0.12 6.17 5.40 -2.91 -0.02 6.16 16 35 H 0.29 12.49 8.29 -92.71 -0.77 11.73 16 36 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 37 H 0.15 5.67 8.06 -2.91 -0.02 5.65 16 38 H 0.10 3.15 6.61 -2.39 -0.02 3.14 16 39 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.14 1.70 5.43 -2.39 -0.01 1.68 16 41 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.11 0.94 5.43 -2.39 -0.01 0.93 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -72.61 358.23 3.26 -69.36 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 1.03 Total: 31.60 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 7.18 Total: 23.75 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -7.12 Total: -108.70 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: 0.13 Total: -52.91 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -72.61 3.26 -69.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158017114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.865 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds