Wall clock time and date at job start Tue Mar 31 2020 18:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36004 * 116.99787 * 180.02562 * 3 2 1 5 5 C 1.38303 * 120.01348 * 359.72706 * 4 3 2 6 6 C 1.39385 * 119.87649 * 179.72928 * 5 4 3 7 7 C 1.48344 * 120.04441 * 180.27441 * 6 5 4 8 8 N 1.30799 * 126.42234 * 0.27223 * 7 6 5 9 9 O 1.21289 * 110.09297 * 180.02562 * 8 7 6 10 10 C 1.33672 * 110.03403 * 359.97438 * 9 8 7 11 11 C 1.50693 * 126.43436 * 179.97438 * 10 9 8 12 12 N 1.46894 * 109.47419 * 269.98031 * 11 10 9 13 13 C 1.46905 * 111.00312 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47192 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00743 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99972 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99849 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00210 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47616 * 89.99596 * 18 16 14 20 20 H 1.48503 * 109.47275 * 209.99960 * 18 16 14 21 21 H 1.48504 * 109.46908 * 329.99553 * 18 16 14 22 22 N 1.30977 * 107.13267 * 359.73334 * 10 9 8 23 23 C 1.39378 * 119.90745 * 0.52086 * 6 5 4 24 24 C 1.37964 * 120.02292 * 359.75662 * 23 6 5 25 25 C 1.38696 * 120.12538 * 359.97438 * 24 23 6 26 26 O 1.35928 * 119.95058 * 180.02562 * 25 24 23 27 27 C 1.42891 * 117.00245 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 33 33 H 1.08005 * 120.05849 * 359.96780 * 5 4 3 34 34 H 1.09004 * 109.47213 * 29.98543 * 11 10 9 35 35 H 1.09002 * 109.46892 * 149.97732 * 11 10 9 36 36 H 1.00900 * 111.00376 * 56.04958 * 12 11 10 37 37 H 1.09002 * 109.47050 * 300.00206 * 13 12 11 38 38 H 1.08999 * 109.46993 * 59.99817 * 13 12 11 39 39 H 0.97000 * 119.99992 * 179.97438 * 17 16 14 40 40 H 1.07999 * 119.98948 * 179.76828 * 23 6 5 41 41 H 1.08001 * 119.93488 * 180.02562 * 24 23 6 42 42 H 1.08994 * 109.47405 * 299.99528 * 27 26 25 43 43 H 1.09007 * 109.47566 * 60.00062 * 27 26 25 44 44 H 1.09002 * 109.47052 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 -0.0005 5 6 4.1973 0.4290 0.0046 6 6 5.5787 0.6149 -0.0016 7 6 6.4861 -0.5586 -0.0023 8 7 6.1285 -1.8168 -0.0024 9 8 7.1103 -2.5290 -0.0024 10 6 8.2184 -1.7814 -0.0029 11 6 9.6383 -2.2859 -0.0026 12 7 10.1000 -2.4485 1.3824 13 6 11.4840 -2.9395 1.4219 14 6 11.9214 -3.0941 2.8557 15 1 11.2397 -2.8515 3.6575 16 6 13.1920 -3.5454 3.1440 17 7 14.0220 -3.8413 2.1676 18 14 13.7340 -3.7378 4.9212 19 1 13.4090 -5.1080 5.3923 20 1 15.1990 -3.5152 5.0188 21 1 13.0249 -2.7429 5.7654 22 7 7.8382 -0.5280 -0.0090 23 6 6.1063 1.9050 -0.0021 24 6 5.2619 2.9961 -0.0015 25 6 3.8872 2.8124 -0.0009 26 8 3.0586 3.8899 -0.0008 27 6 3.6723 5.1803 -0.0008 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.7858 -0.5696 0.0097 34 1 9.6827 -3.2466 -0.5156 35 1 10.2786 -1.5694 -0.5173 36 1 9.4847 -3.0586 1.8994 37 1 11.5415 -3.9047 0.9187 38 1 12.1367 -2.2272 0.9173 39 1 14.9160 -4.1584 2.3704 40 1 7.1764 2.0506 -0.0032 41 1 5.6722 3.9951 -0.0023 42 1 4.2923 5.2878 0.8892 43 1 4.2924 5.2879 -0.8908 44 1 2.9003 5.9498 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:49 Heat of formation + Delta-G solvation = 21.978013 kcal Electronic energy + Delta-G solvation = -27056.967397 eV Core-core repulsion = 22978.778180 eV Total energy + Delta-G solvation = -4078.189217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -45.39558 -40.87116 -38.86664 -37.57066 -36.10171 -35.25706 -33.09859 -32.27950 -31.98187 -30.46476 -29.84632 -27.92186 -27.69214 -25.11505 -24.66048 -24.15683 -22.61177 -21.97894 -21.64895 -20.88900 -18.96047 -17.95769 -17.86878 -17.12444 -16.86045 -16.58224 -16.38390 -15.81512 -15.41878 -15.23121 -14.95295 -14.61900 -14.60631 -13.96693 -13.68304 -13.50448 -13.43851 -12.96610 -12.84215 -12.67235 -12.65351 -12.42223 -12.18428 -12.01881 -11.64869 -11.55040 -11.43997 -11.43549 -11.23325 -11.03125 -10.90893 -10.80528 -10.76694 -10.19529 -9.90597 -9.32885 -9.01041 -8.57666 -8.04269 -7.62017 -6.11817 -4.14205 0.54143 1.03287 1.41223 2.44919 2.83790 2.89742 2.93059 3.28540 3.34987 3.39727 3.48434 3.51913 4.01081 4.37511 4.45450 4.58992 4.60212 4.65321 4.79491 4.83578 4.89676 4.92645 5.00532 5.12030 5.15406 5.19311 5.23369 5.25256 5.37041 5.45539 5.46567 5.55791 5.69789 5.77679 5.88172 5.95302 6.11044 6.23156 6.26012 6.71781 6.97790 7.20943 7.23130 7.61759 7.96428 8.09782 8.23732 8.37116 8.93294 9.50976 10.99118 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.002011 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.284043 B =13919.439655 C =14612.177833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.304 6.304 4 C 0.099 3.901 5 C -0.139 4.139 6 C -0.014 4.014 7 C 0.210 3.790 8 N -0.385 5.385 9 O 0.076 5.924 10 C 0.209 3.791 11 C 0.147 3.853 12 N -0.681 5.681 13 C 0.196 3.804 14 C -0.517 4.517 15 H 0.064 0.936 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.464 5.464 23 C -0.067 4.067 24 C -0.176 4.176 25 C 0.116 3.884 26 O -0.304 6.304 27 C 0.024 3.976 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.336 0.664 37 H -0.005 1.005 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.625 12.455 -7.893 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.218 6.218 4 C 0.053 3.947 5 C -0.160 4.160 6 C -0.016 4.016 7 C -0.060 4.060 8 N -0.093 5.093 9 O 0.017 5.983 10 C -0.012 4.012 11 C 0.015 3.985 12 N -0.314 5.314 13 C 0.070 3.930 14 C -0.556 4.556 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.197 5.197 23 C -0.087 4.087 24 C -0.195 4.195 25 C 0.069 3.931 26 O -0.217 6.217 27 C -0.071 4.071 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.013 0.987 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.377 13.354 -7.879 28.890 hybrid contribution 0.806 -1.287 0.696 1.670 sum -23.571 12.068 -7.183 27.437 Atomic orbital electron populations 1.21752 0.92518 1.02872 1.03537 1.22844 0.96088 0.81932 1.01631 1.86170 1.17508 1.29016 1.89084 1.17902 0.83296 0.90607 1.02872 1.21019 0.92271 0.98364 1.04345 1.16956 0.89845 0.89152 1.05647 1.23777 0.89016 0.91599 1.01612 1.74822 1.08893 1.03832 1.21766 1.85265 1.11636 1.35780 1.65667 1.29087 0.93759 0.84752 0.93592 1.20526 0.81646 1.00881 0.95404 1.60772 1.06959 1.56284 1.07381 1.19647 0.81555 0.93702 0.98077 1.21104 0.98648 1.44022 0.91823 0.91803 1.24973 0.96462 0.95280 0.97727 1.69949 1.07098 1.44963 1.31482 0.86440 0.77726 0.78450 0.84476 1.20651 1.21169 1.19736 1.72025 1.08033 1.19669 1.20023 1.20974 1.00975 0.89878 0.96846 1.21021 0.90756 1.00417 1.07271 1.18401 0.89028 0.85390 1.00286 1.86161 1.33896 1.13136 1.88546 1.23124 1.00034 0.82395 1.01562 0.91504 0.90300 0.91472 0.91880 0.91945 0.83937 0.91939 0.86825 0.84723 0.98726 0.94655 0.92748 0.83795 0.83866 0.92389 0.92456 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.43 5.46 37.16 0.20 0.64 16 3 O -0.30 -3.56 9.92 -34.40 -0.34 -3.90 16 4 C 0.10 1.21 6.69 -39.17 -0.26 0.95 16 5 C -0.14 -1.74 8.68 -39.13 -0.34 -2.08 16 6 C -0.01 -0.19 5.88 -104.89 -0.62 -0.81 16 7 C 0.21 3.33 7.80 -156.10 -1.22 2.11 16 8 N -0.39 -6.17 11.85 30.98 0.37 -5.80 16 9 O 0.08 1.19 11.29 18.03 0.20 1.40 16 10 C 0.21 3.36 8.01 -12.99 -0.10 3.25 16 11 C 0.15 2.35 6.31 -4.98 -0.03 2.31 16 12 N -0.68 -13.64 6.48 -116.34 -0.75 -14.39 16 13 C 0.20 4.76 5.44 -4.98 -0.03 4.74 16 14 C -0.52 -14.07 9.32 -34.44 -0.32 -14.40 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 N -0.46 -7.78 11.25 -9.87 -0.11 -7.89 16 23 C -0.07 -0.80 9.69 -39.26 -0.38 -1.18 16 24 C -0.18 -1.79 9.02 -39.51 -0.36 -2.15 16 25 C 0.12 1.33 6.70 -39.03 -0.26 1.07 16 26 O -0.30 -3.25 10.27 -34.16 -0.35 -3.60 16 27 C 0.02 0.15 9.81 101.05 0.99 1.14 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 33 H 0.14 1.67 6.10 -52.48 -0.32 1.35 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.34 6.47 8.72 -39.29 -0.34 6.13 16 37 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.14 1.70 7.87 -52.49 -0.41 1.29 16 41 H 0.14 1.04 6.28 -52.49 -0.33 0.71 16 42 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 43 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -31.89 380.59 -7.90 -39.78 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.92 Total: 1.02 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.44 Total: -3.51 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.24 Total: -53.09 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.49 Total: -6.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.89 -7.90 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.760 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds