Wall clock time and date at job start Tue Mar 31 2020 18:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36004 * 116.99787 * 180.02562 * 3 2 1 5 5 C 1.38303 * 120.01348 * 359.72706 * 4 3 2 6 6 C 1.39385 * 119.87649 * 179.72928 * 5 4 3 7 7 C 1.48344 * 120.04441 * 180.27441 * 6 5 4 8 8 N 1.30799 * 126.42234 * 0.27223 * 7 6 5 9 9 O 1.21289 * 110.09297 * 180.02562 * 8 7 6 10 10 C 1.33672 * 110.03403 * 359.97438 * 9 8 7 11 11 C 1.50693 * 126.43436 * 179.97438 * 10 9 8 12 12 N 1.46894 * 109.47419 * 269.98031 * 11 10 9 13 13 C 1.46905 * 111.00312 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47192 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00743 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99972 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99849 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00210 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47616 * 89.99596 * 18 16 14 20 20 H 1.48503 * 109.47275 * 209.99960 * 18 16 14 21 21 H 1.48504 * 109.46908 * 329.99553 * 18 16 14 22 22 N 1.30977 * 107.13267 * 359.73334 * 10 9 8 23 23 C 1.39378 * 119.90745 * 0.52086 * 6 5 4 24 24 C 1.37964 * 120.02292 * 359.75662 * 23 6 5 25 25 C 1.38696 * 120.12538 * 359.97438 * 24 23 6 26 26 O 1.35928 * 119.95058 * 180.02562 * 25 24 23 27 27 C 1.42891 * 117.00245 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 33 33 H 1.08005 * 120.05849 * 359.96780 * 5 4 3 34 34 H 1.09004 * 109.47213 * 29.98543 * 11 10 9 35 35 H 1.09002 * 109.46892 * 149.97732 * 11 10 9 36 36 H 1.00900 * 111.00376 * 56.04958 * 12 11 10 37 37 H 1.09002 * 109.47050 * 300.00206 * 13 12 11 38 38 H 1.08999 * 109.46993 * 59.99817 * 13 12 11 39 39 H 0.97000 * 119.99992 * 179.97438 * 17 16 14 40 40 H 1.07999 * 119.98948 * 179.76828 * 23 6 5 41 41 H 1.08001 * 119.93488 * 180.02562 * 24 23 6 42 42 H 1.08994 * 109.47405 * 299.99528 * 27 26 25 43 43 H 1.09007 * 109.47566 * 60.00062 * 27 26 25 44 44 H 1.09002 * 109.47052 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 -0.0005 5 6 4.1973 0.4290 0.0046 6 6 5.5787 0.6149 -0.0016 7 6 6.4861 -0.5586 -0.0023 8 7 6.1285 -1.8168 -0.0024 9 8 7.1103 -2.5290 -0.0024 10 6 8.2184 -1.7814 -0.0029 11 6 9.6383 -2.2859 -0.0026 12 7 10.1000 -2.4485 1.3824 13 6 11.4840 -2.9395 1.4219 14 6 11.9214 -3.0941 2.8557 15 1 11.2397 -2.8515 3.6575 16 6 13.1920 -3.5454 3.1440 17 7 14.0220 -3.8413 2.1676 18 14 13.7340 -3.7378 4.9212 19 1 13.4090 -5.1080 5.3923 20 1 15.1990 -3.5152 5.0188 21 1 13.0249 -2.7429 5.7654 22 7 7.8382 -0.5280 -0.0090 23 6 6.1063 1.9050 -0.0021 24 6 5.2619 2.9961 -0.0015 25 6 3.8872 2.8124 -0.0009 26 8 3.0586 3.8899 -0.0008 27 6 3.6723 5.1803 -0.0008 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.7858 -0.5696 0.0097 34 1 9.6827 -3.2466 -0.5156 35 1 10.2786 -1.5694 -0.5173 36 1 9.4847 -3.0586 1.8994 37 1 11.5415 -3.9047 0.9187 38 1 12.1367 -2.2272 0.9173 39 1 14.9160 -4.1584 2.3704 40 1 7.1764 2.0506 -0.0032 41 1 5.6722 3.9951 -0.0023 42 1 4.2923 5.2878 0.8892 43 1 4.2924 5.2879 -0.8908 44 1 2.9003 5.9498 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:46 Heat of formation + Delta-G solvation = -0.022566 kcal Electronic energy + Delta-G solvation = -27057.921414 eV Core-core repulsion = 22978.778180 eV Total energy + Delta-G solvation = -4079.143234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -46.64143 -41.70824 -39.63624 -38.48644 -37.62942 -36.52314 -34.85202 -33.56714 -32.89436 -31.45697 -30.65983 -29.62708 -28.33277 -26.80127 -25.66621 -25.02340 -23.82318 -23.43703 -22.81335 -21.91459 -19.85706 -19.21768 -18.95301 -18.53141 -18.05938 -17.53675 -17.33685 -16.94931 -16.46365 -16.41921 -16.40000 -15.81742 -15.40916 -15.30309 -15.11066 -14.48288 -14.41768 -14.14532 -13.98662 -13.58020 -13.51265 -13.42600 -13.31310 -13.14735 -13.04756 -12.83574 -12.69292 -12.61998 -12.30739 -12.22179 -12.15703 -12.05301 -11.99127 -11.76255 -11.37505 -11.14639 -10.64328 -9.91224 -9.28825 -8.93842 -8.21177 -6.30633 -0.49409 0.12835 0.21889 1.29813 1.44275 1.45210 1.56434 1.65748 2.07087 2.19178 2.37740 2.43033 2.56306 2.83295 3.13428 3.54895 3.61744 3.74904 3.85341 3.98650 4.01975 4.07384 4.17822 4.27791 4.31101 4.34430 4.40408 4.43097 4.45835 4.56459 4.72727 4.77661 4.81843 4.90293 4.91798 5.06472 5.08512 5.19855 5.26228 5.28359 5.38683 5.59601 5.97984 5.98351 6.30468 6.44085 6.54917 6.85689 6.99770 7.39199 8.89811 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.002011 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.284043 B =13919.439655 C =14612.177833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.317 6.317 4 C 0.087 3.913 5 C -0.139 4.139 6 C -0.041 4.041 7 C 0.210 3.790 8 N -0.394 5.394 9 O 0.076 5.924 10 C 0.211 3.789 11 C 0.152 3.848 12 N -0.686 5.686 13 C 0.211 3.789 14 C -0.537 4.537 15 H 0.061 0.939 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.269 1.269 22 N -0.478 5.478 23 C -0.068 4.068 24 C -0.166 4.166 25 C 0.116 3.884 26 O -0.321 6.321 27 C 0.012 3.988 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.340 0.660 37 H -0.018 1.018 38 H 0.015 0.985 39 H 0.266 0.734 40 H 0.145 0.855 41 H 0.176 0.824 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.531 13.538 -7.452 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.231 6.231 4 C 0.041 3.959 5 C -0.160 4.160 6 C -0.044 4.044 7 C -0.060 4.060 8 N -0.103 5.103 9 O 0.018 5.982 10 C -0.011 4.011 11 C 0.021 3.979 12 N -0.319 5.319 13 C 0.084 3.916 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.194 1.194 22 N -0.212 5.212 23 C -0.088 4.088 24 C -0.184 4.184 25 C 0.069 3.931 26 O -0.235 6.235 27 C -0.082 4.082 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.000 1.000 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.163 0.837 41 H 0.193 0.807 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.308 14.439 -7.445 30.073 hybrid contribution 0.960 -1.505 0.508 1.856 sum -24.348 12.934 -6.938 28.429 Atomic orbital electron populations 1.21776 0.90827 1.04184 1.03445 1.23087 0.97452 0.80853 1.01883 1.86162 1.17224 1.30706 1.89057 1.18092 0.83588 0.91062 1.03138 1.20994 0.91887 0.98718 1.04394 1.17117 0.90088 0.89166 1.07989 1.24156 0.88974 0.92129 1.00737 1.74808 1.08895 1.04057 1.22553 1.85251 1.11530 1.35703 1.65728 1.28939 0.93701 0.84727 0.93684 1.20508 0.81675 1.02309 0.93358 1.60552 1.05256 1.56024 1.10114 1.19274 0.83502 0.92462 0.96384 1.21476 0.98972 1.43933 0.93124 0.92080 1.25826 0.96586 0.94926 1.01926 1.70052 1.07487 1.45723 1.33527 0.85403 0.77261 0.78660 0.79397 1.19769 1.20756 1.19358 1.72019 1.08685 1.20022 1.20464 1.21071 1.01290 0.89791 0.96693 1.21282 0.90038 1.01305 1.05774 1.18605 0.89586 0.85641 0.99314 1.86151 1.34805 1.14329 1.88192 1.23474 1.01212 0.80693 1.02784 0.91487 0.88280 0.91624 0.91769 0.91560 0.83815 0.89538 0.86243 0.84219 1.00026 0.96667 0.92546 0.83742 0.80707 0.91226 0.91057 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.70 5.46 71.98 0.39 1.10 16 3 O -0.32 -7.31 9.92 -79.59 -0.79 -8.10 16 4 C 0.09 2.09 6.69 22.53 0.15 2.24 16 5 C -0.14 -3.48 8.68 22.56 0.20 -3.28 16 6 C -0.04 -1.13 5.88 -20.04 -0.12 -1.25 16 7 C 0.21 6.64 7.80 137.25 1.07 7.71 16 8 N -0.39 -12.60 11.85 -59.06 -0.70 -13.30 16 9 O 0.08 2.36 11.29 74.58 0.84 3.21 16 10 C 0.21 6.66 8.01 88.35 0.71 7.37 16 11 C 0.15 4.77 6.31 85.56 0.54 5.31 16 12 N -0.69 -27.37 6.48 -522.00 -3.38 -30.75 16 13 C 0.21 10.35 5.44 85.55 0.47 10.81 16 14 C -0.54 -29.27 9.32 25.60 0.24 -29.03 16 15 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 16 C 0.01 0.34 5.46 84.66 0.46 0.81 16 17 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 18 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 N -0.48 -15.90 11.25 -302.45 -3.40 -19.30 16 23 C -0.07 -1.59 9.69 22.48 0.22 -1.37 16 24 C -0.17 -3.08 9.02 22.31 0.20 -2.88 16 25 C 0.12 2.51 6.70 22.63 0.15 2.66 16 26 O -0.32 -6.32 10.27 -78.73 -0.81 -7.13 16 27 C 0.01 0.12 9.81 113.37 1.11 1.23 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.04 7.65 -2.39 -0.02 1.03 16 32 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 33 H 0.14 3.41 6.10 -2.91 -0.02 3.39 16 34 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.34 13.03 8.72 -89.69 -0.78 12.24 16 37 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.14 3.30 7.87 -2.91 -0.02 3.28 16 41 H 0.18 2.01 6.28 -2.91 -0.02 1.99 16 42 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 43 H 0.07 0.51 7.65 -2.38 -0.02 0.49 16 44 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.87 380.59 0.86 -67.01 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.26 Total: 15.98 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.53 Total: 0.44 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -7.20 Total: -116.62 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.76 Total: -12.02 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.87 0.86 -67.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.989 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds