Wall clock time and date at job start Tue Mar 31 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.52993 * 109.47176 * 85.00030 * 4 3 2 6 6 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 7 7 O 1.42098 * 104.27771 * 206.06877 * 6 3 2 8 8 O 1.42097 * 104.27570 * 333.92835 * 6 3 2 9 9 C 1.81397 * 104.45020 * 89.99811 * 6 3 2 10 10 C 1.50705 * 109.47332 * 179.97438 * 9 6 3 11 11 O 1.21277 * 119.99429 * 0.02562 * 10 9 6 12 12 N 1.34773 * 119.99987 * 180.02562 * 10 9 6 13 13 C 1.46497 * 120.00100 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.88307 * 328.87783 * 13 12 10 15 15 C 1.55147 * 111.00840 * 204.99652 * 13 12 10 16 16 C 1.54320 * 102.94402 * 277.42743 * 15 13 12 17 17 N 1.47021 * 107.27102 * 337.80432 * 16 15 13 18 18 C 1.36931 * 125.64719 * 178.98681 * 17 16 15 19 19 H 1.08005 * 120.00011 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00153 * 359.97438 * 18 17 16 21 21 N 1.31616 * 119.99886 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47521 * 89.99949 * 22 20 18 24 24 H 1.48497 * 109.47238 * 210.00193 * 22 20 18 25 25 H 1.48506 * 109.47243 * 330.00153 * 22 20 18 26 26 C 1.47427 * 108.70051 * 358.94203 * 17 16 15 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 33 33 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 34 34 H 1.09002 * 109.47308 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47325 * 300.00280 * 5 4 3 36 36 H 1.09001 * 109.47323 * 59.99729 * 5 4 3 37 37 H 1.08996 * 109.47388 * 300.00192 * 9 6 3 38 38 H 1.09007 * 109.47215 * 59.99916 * 9 6 3 39 39 H 0.97000 * 120.00412 * 359.97438 * 12 10 9 40 40 H 1.09008 * 110.71854 * 35.79071 * 15 13 12 41 41 H 1.08996 * 110.72417 * 158.88407 * 15 13 12 42 42 H 1.09004 * 109.88538 * 97.22585 * 16 15 13 43 43 H 1.09004 * 109.88119 * 218.23258 * 16 15 13 44 44 H 0.97006 * 119.99564 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.36288 * 265.28474 * 26 17 16 46 46 H 1.08998 * 110.36092 * 142.97056 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8157 2.7384 -1.6411 6 16 2.4121 2.1202 1.4288 7 8 2.2333 3.5055 1.1678 8 8 1.6208 1.4495 2.3999 9 6 4.1696 1.7389 1.6661 10 6 4.6508 2.3655 2.9495 11 8 3.8834 3.0058 3.6365 12 7 5.9337 2.2143 3.3336 13 6 6.4014 2.8229 4.5815 14 1 5.8578 3.7439 4.7921 15 6 7.9311 3.0778 4.5369 16 6 8.5217 1.7039 4.9181 17 7 7.4798 0.9688 5.6499 18 6 7.5987 -0.3020 6.1457 19 1 6.7718 -0.7561 6.6717 20 6 8.7820 -1.0068 5.9725 21 7 9.7895 -0.4537 5.3311 22 14 8.9439 -2.7407 6.6483 23 1 8.5025 -3.7164 5.6195 24 1 10.3617 -3.0032 7.0035 25 1 8.0961 -2.8811 7.8595 26 6 6.2863 1.8269 5.7623 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.9079 2.8919 -1.1513 33 1 2.4688 1.4184 -2.0480 34 1 0.9196 3.2793 -2.5817 35 1 0.0660 1.9552 -1.7537 36 1 0.5049 3.4287 -0.8569 37 1 4.3035 0.6583 1.7164 38 1 4.7441 2.1375 0.8299 39 1 6.5474 1.7019 2.7843 40 1 8.2447 3.3675 3.5339 41 1 8.2167 3.8384 5.2635 42 1 8.7983 1.1564 4.0170 43 1 9.3976 1.8401 5.5524 44 1 10.6165 -0.9462 5.2104 45 1 6.2919 2.3619 6.7119 46 1 5.3795 1.2295 5.6678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318357678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:57 Heat of formation + Delta-G solvation = -76.617385 kcal Electronic energy + Delta-G solvation = -27798.468413 eV Core-core repulsion = 23851.447730 eV Total energy + Delta-G solvation = -3947.020683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -39.84195 -37.57408 -37.37686 -37.23401 -35.91367 -33.94076 -32.12196 -31.97895 -30.47881 -29.42303 -29.09636 -27.15717 -24.51234 -23.50725 -22.85195 -21.43037 -20.18110 -19.96060 -19.00701 -18.17718 -17.24613 -16.76201 -16.63599 -16.58531 -15.70245 -15.53645 -14.72226 -14.69314 -14.59729 -14.17256 -13.89812 -13.86135 -13.69622 -13.32753 -13.05599 -12.95170 -12.60630 -12.36833 -12.32933 -12.09319 -12.00925 -11.99836 -11.89214 -11.82225 -11.35076 -11.04852 -11.02362 -10.94211 -10.89619 -10.82255 -10.51906 -10.18978 -10.05993 -10.03302 -9.74288 -9.45532 -8.93104 -8.62645 -6.89348 -5.78286 -3.11179 0.00209 2.46238 2.48896 3.13756 3.35432 3.41640 3.43408 3.78611 3.98998 4.23836 4.44763 4.51337 4.63236 4.81539 4.86767 4.92078 5.03001 5.07270 5.14102 5.20468 5.21422 5.37390 5.41757 5.43272 5.50682 5.68477 5.74765 5.74938 5.82277 5.97509 6.09362 6.10724 6.27333 6.30013 6.38145 6.40222 6.62393 6.85710 7.45609 7.47338 7.55127 7.73559 8.14488 8.18135 9.15784 9.75406 10.40794 11.33632 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.002986 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.891671 B = 9374.405371 C =10225.186412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.119 3.881 3 N -1.003 6.003 4 C 0.120 3.880 5 C -0.177 4.177 6 S 2.641 3.359 7 O -0.938 6.938 8 O -0.935 6.935 9 C -0.676 4.676 10 C 0.541 3.459 11 O -0.546 6.546 12 N -0.687 5.687 13 C 0.122 3.878 14 H 0.096 0.904 15 C -0.153 4.153 16 C 0.175 3.825 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.123 3.877 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.407 0.593 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 4.068 -17.070 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.006 4.006 3 N -0.842 5.842 4 C -0.005 4.005 5 C -0.236 4.236 6 S 2.730 3.270 7 O -0.928 6.928 8 O -0.924 6.924 9 C -0.804 4.804 10 C 0.325 3.675 11 O -0.426 6.426 12 N -0.336 5.336 13 C 0.017 3.983 14 H 0.114 0.886 15 C -0.192 4.192 16 C 0.050 3.950 17 N -0.331 5.331 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.743 3.257 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.243 0.757 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.532 4.832 -16.014 21.515 hybrid contribution 1.292 -1.686 -0.228 2.136 sum -12.240 3.146 -16.242 20.579 Atomic orbital electron populations 1.22331 0.95692 1.02486 1.03075 1.21283 0.95222 0.80922 1.03196 1.57930 1.79336 1.24174 1.22761 1.21260 0.98424 0.95607 0.85236 1.22335 0.97669 1.01441 1.02172 1.04436 0.75851 0.74168 0.72594 1.93572 1.84217 1.31120 1.83906 1.93589 1.64032 1.75742 1.59083 1.31182 1.30516 1.13027 1.05644 1.19047 0.83453 0.80289 0.84756 1.90824 1.54200 1.42077 1.55466 1.45722 1.09992 1.53295 1.24586 1.22318 0.95576 0.96568 0.83886 0.88626 1.23240 0.93348 1.01231 1.01387 1.21186 0.91060 0.86257 0.96515 1.44492 1.09950 1.13033 1.65670 1.19077 0.98697 0.88456 1.29164 0.90449 1.24784 0.96154 0.98701 1.00854 1.69949 1.04195 1.36629 1.46422 0.86109 0.76937 0.84115 0.78558 1.21669 1.21680 1.20666 1.21970 0.91712 0.92317 0.94387 0.91943 0.91534 0.91506 0.89919 0.90279 0.90107 0.90310 0.91602 0.91880 0.91516 0.82290 0.82587 0.75748 0.91505 0.90634 0.93592 0.93601 0.93784 0.95012 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 10.02 37.16 0.37 -1.01 16 2 C 0.12 0.89 6.00 -4.04 -0.02 0.86 16 3 N -1.00 -8.85 2.74 -114.38 -0.31 -9.17 16 4 C 0.12 0.82 6.00 -4.04 -0.02 0.80 16 5 C -0.18 -1.29 10.02 37.15 0.37 -0.92 16 6 S 2.64 34.28 4.46 -107.50 -0.48 33.80 16 7 O -0.94 -14.65 16.75 -57.55 -0.96 -15.61 16 8 O -0.93 -15.36 16.75 -57.55 -0.96 -16.32 16 9 C -0.68 -7.45 6.66 36.01 0.24 -7.21 16 10 C 0.54 8.72 7.85 -10.98 -0.09 8.63 16 11 O -0.55 -10.76 15.50 5.56 0.09 -10.67 16 12 N -0.69 -10.99 5.19 -51.73 -0.27 -11.26 16 13 C 0.12 2.15 3.43 -65.79 -0.23 1.93 16 14 H 0.10 1.64 7.54 -51.93 -0.39 1.24 16 15 C -0.15 -2.63 6.55 -24.90 -0.16 -2.79 16 16 C 0.17 3.95 5.36 -3.07 -0.02 3.93 16 17 N -0.60 -14.91 3.39 -170.07 -0.58 -15.49 16 18 C -0.23 -6.17 10.28 -15.06 -0.15 -6.33 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.14 10.31 55.49 0.57 -25.57 16 22 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.12 2.61 6.93 -2.53 -0.02 2.59 16 27 H 0.06 0.42 5.68 -51.93 -0.29 0.13 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 30 H 0.08 0.63 7.61 -51.93 -0.40 0.23 16 31 H 0.08 0.38 8.00 -51.93 -0.42 -0.03 16 32 H 0.08 0.52 7.61 -51.93 -0.40 0.12 16 33 H 0.08 0.34 8.00 -51.93 -0.42 -0.07 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.41 5.68 -51.93 -0.29 0.12 16 36 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 37 H 0.16 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.16 1.12 8.14 -51.92 -0.42 0.70 16 39 H 0.41 5.89 8.67 -40.82 -0.35 5.54 16 40 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 43 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -36.11 381.29 -9.49 -45.60 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.48 Total: 2.08 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 0.18 Total: 0.14 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.59 Total: -61.48 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.84 Total: -42.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 34.28 SS G_CDS: -0.48 Total: 33.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.11 -9.49 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318357678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.021 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds