Wall clock time and date at job start Tue Mar 31 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.52993 * 109.47176 * 85.00030 * 4 3 2 6 6 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 7 7 O 1.42098 * 104.27771 * 206.06877 * 6 3 2 8 8 O 1.42097 * 104.27570 * 333.92835 * 6 3 2 9 9 C 1.81397 * 104.45020 * 89.99811 * 6 3 2 10 10 C 1.50705 * 109.47332 * 179.97438 * 9 6 3 11 11 O 1.21277 * 119.99429 * 0.02562 * 10 9 6 12 12 N 1.34773 * 119.99987 * 180.02562 * 10 9 6 13 13 C 1.46497 * 120.00100 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.88307 * 328.87783 * 13 12 10 15 15 C 1.55147 * 111.00840 * 204.99652 * 13 12 10 16 16 C 1.54320 * 102.94402 * 277.42743 * 15 13 12 17 17 N 1.47021 * 107.27102 * 337.80432 * 16 15 13 18 18 C 1.36931 * 125.64719 * 178.98681 * 17 16 15 19 19 H 1.08005 * 120.00011 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00153 * 359.97438 * 18 17 16 21 21 N 1.31616 * 119.99886 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47521 * 89.99949 * 22 20 18 24 24 H 1.48497 * 109.47238 * 210.00193 * 22 20 18 25 25 H 1.48506 * 109.47243 * 330.00153 * 22 20 18 26 26 C 1.47427 * 108.70051 * 358.94203 * 17 16 15 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 33 33 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 34 34 H 1.09002 * 109.47308 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47325 * 300.00280 * 5 4 3 36 36 H 1.09001 * 109.47323 * 59.99729 * 5 4 3 37 37 H 1.08996 * 109.47388 * 300.00192 * 9 6 3 38 38 H 1.09007 * 109.47215 * 59.99916 * 9 6 3 39 39 H 0.97000 * 120.00412 * 359.97438 * 12 10 9 40 40 H 1.09008 * 110.71854 * 35.79071 * 15 13 12 41 41 H 1.08996 * 110.72417 * 158.88407 * 15 13 12 42 42 H 1.09004 * 109.88538 * 97.22585 * 16 15 13 43 43 H 1.09004 * 109.88119 * 218.23258 * 16 15 13 44 44 H 0.97006 * 119.99564 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.36288 * 265.28474 * 26 17 16 46 46 H 1.08998 * 110.36092 * 142.97056 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8157 2.7384 -1.6411 6 16 2.4121 2.1202 1.4288 7 8 2.2333 3.5055 1.1678 8 8 1.6208 1.4495 2.3999 9 6 4.1696 1.7389 1.6661 10 6 4.6508 2.3655 2.9495 11 8 3.8834 3.0058 3.6365 12 7 5.9337 2.2143 3.3336 13 6 6.4014 2.8229 4.5815 14 1 5.8578 3.7439 4.7921 15 6 7.9311 3.0778 4.5369 16 6 8.5217 1.7039 4.9181 17 7 7.4798 0.9688 5.6499 18 6 7.5987 -0.3020 6.1457 19 1 6.7718 -0.7561 6.6717 20 6 8.7820 -1.0068 5.9725 21 7 9.7895 -0.4537 5.3311 22 14 8.9439 -2.7407 6.6483 23 1 8.5025 -3.7164 5.6195 24 1 10.3617 -3.0032 7.0035 25 1 8.0961 -2.8811 7.8595 26 6 6.2863 1.8269 5.7623 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.9079 2.8919 -1.1513 33 1 2.4688 1.4184 -2.0480 34 1 0.9196 3.2793 -2.5817 35 1 0.0660 1.9552 -1.7537 36 1 0.5049 3.4287 -0.8569 37 1 4.3035 0.6583 1.7164 38 1 4.7441 2.1375 0.8299 39 1 6.5474 1.7019 2.7843 40 1 8.2447 3.3675 3.5339 41 1 8.2167 3.8384 5.2635 42 1 8.7983 1.1564 4.0170 43 1 9.3976 1.8401 5.5524 44 1 10.6165 -0.9462 5.2104 45 1 6.2919 2.3619 6.7119 46 1 5.3795 1.2295 5.6678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318357678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:55 Heat of formation + Delta-G solvation = -104.822350 kcal Electronic energy + Delta-G solvation = -27799.691472 eV Core-core repulsion = 23851.447730 eV Total energy + Delta-G solvation = -3948.243742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19300 -39.02919 -38.31861 -38.16982 -36.99692 -35.56830 -33.85009 -32.54006 -31.77458 -30.76848 -30.04242 -28.80294 -26.43301 -24.07992 -23.51893 -22.77833 -21.93691 -21.43604 -19.90000 -19.21846 -18.88911 -17.99038 -17.93109 -17.47423 -16.96930 -16.63732 -16.54428 -15.79547 -15.64628 -15.41280 -15.24153 -14.85324 -14.74614 -14.34044 -14.26440 -13.87606 -13.68022 -13.60390 -13.58970 -13.22283 -13.13165 -13.08464 -13.06559 -12.92410 -12.81501 -12.39878 -12.39292 -12.31640 -12.13954 -12.03598 -11.84180 -11.71599 -11.62669 -11.43500 -11.41464 -10.73835 -10.27150 -10.11796 -8.88893 -7.86687 -5.21050 -0.96108 1.25115 1.45887 1.47121 1.55843 1.59753 2.01216 2.48254 2.82680 3.07837 3.29236 3.33662 3.63406 3.72625 3.76935 3.86360 4.02743 4.18805 4.26879 4.28009 4.32809 4.39513 4.50285 4.62917 4.64999 4.68715 4.69679 4.84474 4.90680 4.91492 4.98430 5.01248 5.17132 5.24377 5.38222 5.40293 5.43513 5.53732 5.65094 5.70704 5.75619 6.18019 6.27138 6.91701 7.10615 7.75059 8.39165 9.23060 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.002986 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.891671 B = 9374.405371 C =10225.186412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 N -0.992 5.992 4 C 0.110 3.890 5 C -0.181 4.181 6 S 2.640 3.360 7 O -0.974 6.974 8 O -0.982 6.982 9 C -0.663 4.663 10 C 0.532 3.468 11 O -0.588 6.588 12 N -0.684 5.684 13 C 0.132 3.868 14 H 0.107 0.893 15 C -0.133 4.133 16 C 0.182 3.818 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.057 4.057 21 N -0.945 5.945 22 Si 0.974 3.026 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.119 3.881 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.188 0.812 38 H 0.203 0.797 39 H 0.416 0.584 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.010 0.990 44 H 0.248 0.752 45 H 0.034 0.966 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 3.375 -19.514 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.014 4.014 3 N -0.832 5.832 4 C -0.014 4.014 5 C -0.240 4.240 6 S 2.731 3.269 7 O -0.964 6.964 8 O -0.972 6.972 9 C -0.791 4.791 10 C 0.318 3.682 11 O -0.470 6.470 12 N -0.333 5.333 13 C 0.026 3.974 14 H 0.124 0.876 15 C -0.171 4.171 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.803 3.197 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.202 1.202 26 C -0.008 4.008 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.206 0.794 38 H 0.220 0.780 39 H 0.253 0.747 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.028 0.972 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.175 4.153 -18.475 23.068 hybrid contribution 1.137 -1.485 0.518 1.941 sum -12.037 2.668 -17.957 21.782 Atomic orbital electron populations 1.22371 0.96373 1.03193 1.01993 1.21562 0.94793 0.80180 1.04890 1.57610 1.78977 1.24720 1.21922 1.21597 0.98259 0.96604 0.84935 1.22377 0.98339 1.01277 1.02012 1.04048 0.76489 0.73390 0.72945 1.93522 1.85103 1.33337 1.84476 1.93530 1.66006 1.76252 1.61389 1.31093 1.28941 1.14656 1.04440 1.19786 0.82887 0.79624 0.85915 1.90814 1.55122 1.43874 1.57175 1.45686 1.10372 1.53262 1.23982 1.22130 0.96095 0.95811 0.83381 0.87563 1.23097 0.92226 0.98172 1.03610 1.20992 0.89963 0.88763 0.94545 1.44709 1.11541 1.12845 1.65647 1.19341 0.98730 0.89896 1.29278 0.90971 1.25514 0.95927 1.02165 1.01476 1.70136 1.04288 1.37658 1.47247 0.85147 0.76496 0.79992 0.78074 1.20958 1.21951 1.20203 1.22085 0.89879 0.92517 0.96295 0.90907 0.89976 0.94709 0.90288 0.86407 0.89559 0.86502 0.89708 0.91271 0.94624 0.79421 0.78012 0.74669 0.88308 0.89012 0.95657 0.97180 0.94254 0.94868 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 10.02 71.98 0.72 -1.90 16 2 C 0.11 1.37 6.00 86.38 0.52 1.89 16 3 N -0.99 -15.42 2.74 -515.80 -1.41 -16.83 16 4 C 0.11 1.18 6.00 86.38 0.52 1.70 16 5 C -0.18 -2.35 10.02 71.98 0.72 -1.63 16 6 S 2.64 66.92 4.46 -56.49 -0.25 66.67 16 7 O -0.97 -30.65 16.75 -127.64 -2.14 -32.78 16 8 O -0.98 -33.21 16.75 -127.64 -2.14 -35.35 16 9 C -0.66 -12.84 6.66 71.24 0.47 -12.37 16 10 C 0.53 16.35 7.85 87.66 0.69 17.04 16 11 O -0.59 -23.11 15.50 -3.02 -0.05 -23.16 16 12 N -0.68 -20.55 5.19 -435.98 -2.26 -22.81 16 13 C 0.13 4.47 3.43 46.38 0.16 4.62 16 14 H 0.11 3.46 7.54 -2.38 -0.02 3.44 16 15 C -0.13 -4.27 6.55 31.78 0.21 -4.07 16 16 C 0.18 8.23 5.36 86.73 0.47 8.69 16 17 N -0.62 -30.80 3.39 -691.99 -2.35 -33.15 16 18 C -0.24 -13.45 10.28 84.03 0.86 -12.58 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 21 N -0.94 -53.94 10.31 21.65 0.22 -53.71 16 22 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.12 5.02 6.93 86.85 0.60 5.62 16 27 H 0.07 0.87 5.68 -2.39 -0.01 0.86 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.03 0.72 7.90 -2.39 -0.02 0.70 16 30 H 0.08 1.06 7.61 -2.39 -0.02 1.04 16 31 H 0.12 0.61 8.00 -2.39 -0.02 0.59 16 32 H 0.09 0.85 7.61 -2.39 -0.02 0.83 16 33 H 0.12 0.43 8.00 -2.39 -0.02 0.41 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.78 5.68 -2.39 -0.01 0.77 16 36 H 0.03 0.68 7.90 -2.39 -0.02 0.66 16 37 H 0.19 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.20 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.42 10.99 8.67 -92.71 -0.80 10.19 16 40 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.03 1.23 7.38 -2.38 -0.02 1.22 16 43 H 0.01 0.52 7.50 -2.39 -0.02 0.50 16 44 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -82.38 381.29 -1.77 -84.15 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.18 Total: 15.87 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.40 Total: 4.34 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -5.80 Total: -126.51 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -4.32 Total: -91.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 66.92 SS G_CDS: -0.25 Total: 66.67 kcal Total: -82.38 -1.77 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318357678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.674 kcal (2) G-P(sol) polarization free energy of solvation -82.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds