Wall clock time and date at job start Tue Mar 31 2020 19:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 120.00373 * 2 1 4 4 N 1.34783 * 119.99895 * 179.97438 * 2 1 3 5 5 C 1.39928 * 119.99984 * 184.62312 * 4 2 1 6 6 C 1.38892 * 120.07048 * 324.90096 * 5 4 2 7 7 C 1.38092 * 119.92696 * 180.02562 * 6 5 4 8 8 C 1.38304 * 120.07037 * 359.72027 * 7 6 5 9 9 C 1.38264 * 120.13996 * 0.55869 * 8 7 6 10 10 C 1.50699 * 119.96297 * 179.72224 * 9 8 7 11 11 N 1.46499 * 109.46742 * 269.72180 * 10 9 8 12 12 C 1.34778 * 119.99932 * 180.02562 * 11 10 9 13 13 O 1.21349 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.49454 * 120.00181 * 179.72480 * 12 11 10 15 15 O 1.21349 * 119.99762 * 0.27439 * 14 12 11 16 16 N 1.34778 * 119.99790 * 180.27003 * 14 12 11 17 17 C 1.46504 * 119.99560 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.46933 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47321 * 179.97438 * 18 17 16 20 20 H 1.08008 * 119.99700 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00399 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47355 * 60.00354 * 23 21 19 25 25 H 1.48501 * 109.46884 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47464 * 300.00009 * 23 21 19 27 27 C 1.38137 * 120.06773 * 359.44187 * 9 8 7 28 28 H 1.09000 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47137 * 299.99969 * 1 2 3 30 30 H 1.08995 * 109.47289 * 59.99916 * 1 2 3 31 31 H 0.97002 * 119.99711 * 4.63260 * 4 2 1 32 32 H 1.08001 * 120.03851 * 0.02562 * 6 5 4 33 33 H 1.07995 * 119.96313 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.93114 * 180.27158 * 8 7 6 35 35 H 1.08998 * 109.47098 * 149.72651 * 10 9 8 36 36 H 1.08995 * 109.47250 * 29.72187 * 10 9 8 37 37 H 0.96997 * 120.00134 * 359.97438 * 11 10 9 38 38 H 0.96997 * 120.00384 * 0.02562 * 16 14 12 39 39 H 1.09003 * 109.47128 * 300.00112 * 17 16 14 40 40 H 1.08994 * 109.47238 * 59.99962 * 17 16 14 41 41 H 1.08994 * 109.47399 * 300.00241 * 18 17 16 42 42 H 1.09002 * 109.47104 * 60.00177 * 18 17 16 43 43 H 0.96997 * 120.00693 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.03189 * 180.25540 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5767 -1.1692 0.0982 6 6 4.3178 -0.1600 -0.5029 7 6 5.6953 -0.1651 -0.4051 8 6 6.3365 -1.1706 0.2954 9 6 5.6020 -2.1798 0.8900 10 6 6.3052 -3.2768 1.6471 11 7 6.6126 -4.3805 0.7341 12 6 7.2446 -5.4787 1.1932 13 8 7.5595 -5.5531 2.3628 14 6 7.5527 -6.6073 0.2632 15 8 7.2382 -6.5328 -0.9064 16 7 8.1799 -7.7078 0.7236 17 6 8.4814 -8.8144 -0.1880 18 6 9.1895 -9.9309 0.5820 19 6 9.4991 -11.0694 -0.3555 20 1 9.2192 -11.0030 -1.3966 21 6 10.1407 -12.1953 0.1154 22 7 10.4820 -12.2759 1.3829 23 14 10.5250 -13.6062 -1.0469 24 1 11.4066 -13.1216 -2.1392 25 1 11.2122 -14.6900 -0.2995 26 1 9.2614 -14.1291 -1.6257 27 6 4.2238 -2.1803 0.7958 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6982 -2.0059 -0.0670 32 1 3.8174 0.6279 -1.0463 33 1 6.2721 0.6195 -0.8719 34 1 7.4137 -1.1699 0.3742 35 1 5.6597 -3.6369 2.4481 36 1 7.2306 -2.8889 2.0727 37 1 6.3605 -4.3212 -0.2007 38 1 8.4311 -7.7676 1.6586 39 1 7.5539 -9.1982 -0.6128 40 1 9.1283 -8.4586 -0.9898 41 1 10.1170 -9.5474 1.0071 42 1 8.5422 -10.2866 1.3835 43 1 10.9337 -13.0678 1.7142 44 1 3.6503 -2.9667 1.2641 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340370875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:26 Heat of formation + Delta-G solvation = -88.993007 kcal Electronic energy + Delta-G solvation = -26366.272064 eV Core-core repulsion = 22283.270782 eV Total energy + Delta-G solvation = -4083.001282 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04213 -40.41927 -39.13667 -38.20986 -35.85462 -35.20968 -34.58285 -32.86777 -31.72373 -31.34335 -29.82880 -29.12219 -27.13904 -25.30660 -23.43218 -23.03358 -22.43693 -21.04125 -20.65687 -20.18479 -18.60575 -17.92857 -17.18498 -16.85272 -16.65226 -16.29586 -16.19133 -15.81662 -15.33547 -15.17815 -14.90576 -14.61133 -14.42217 -14.32513 -14.07750 -13.49340 -13.46791 -13.25742 -13.18700 -13.08494 -12.65470 -12.59238 -12.32500 -12.11662 -11.69326 -11.52394 -11.24978 -11.05385 -10.83474 -10.69225 -10.39753 -10.33458 -9.82723 -9.51961 -9.40178 -9.33088 -9.12751 -8.70462 -8.60345 -8.42170 -6.10560 -4.14421 0.80167 0.88329 1.59926 2.02928 2.53101 2.58463 3.30110 3.34379 3.36363 3.39218 3.41704 3.96435 4.14999 4.21318 4.39950 4.46234 4.55906 4.73229 4.76103 4.80037 4.90741 4.94507 5.08113 5.23213 5.26193 5.30505 5.32438 5.55838 5.84146 5.90844 6.04947 6.09736 6.17197 6.17438 6.22914 6.58159 6.58715 6.68423 6.82340 7.03711 7.45742 7.54654 7.57122 7.65140 7.86393 7.91050 8.20434 8.33172 8.90878 9.50439 11.00820 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.001606 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.910589 B =17425.193081 C =17811.384601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.528 6.528 4 N -0.674 5.674 5 C 0.137 3.863 6 C -0.111 4.111 7 C -0.103 4.103 8 C -0.110 4.110 9 C -0.091 4.091 10 C 0.161 3.839 11 N -0.702 5.702 12 C 0.508 3.492 13 O -0.520 6.520 14 C 0.497 3.503 15 O -0.533 6.533 16 N -0.686 5.686 17 C 0.119 3.881 18 C 0.011 3.989 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.122 4.122 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.413 0.587 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 25.755 -1.128 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.404 6.404 4 N -0.320 5.320 5 C 0.043 3.957 6 C -0.132 4.132 7 C -0.122 4.122 8 C -0.129 4.129 9 C -0.093 4.093 10 C 0.038 3.962 11 N -0.356 5.356 12 C 0.289 3.711 13 O -0.395 6.395 14 C 0.277 3.723 15 O -0.411 6.411 16 N -0.337 5.337 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.563 4.563 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.143 4.143 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.250 0.750 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.906 26.372 -0.957 31.891 hybrid contribution -0.040 -1.250 -0.525 1.356 sum -17.946 25.122 -1.483 30.909 Atomic orbital electron populations 1.21864 0.90514 1.04748 1.05827 1.21054 0.90976 0.83078 0.74955 1.90740 1.70380 1.31311 1.47925 1.43688 1.05208 1.10109 1.72972 1.17709 0.82616 0.97232 0.98105 1.21345 0.93855 0.98920 0.99044 1.21095 0.93979 0.98462 0.98647 1.21153 1.00270 0.94037 0.97447 1.19586 0.92973 0.96643 1.00055 1.20265 1.00176 0.84360 0.91382 1.45816 1.58875 1.16635 1.14322 1.20486 0.78610 0.83713 0.88303 1.90765 1.51205 1.80252 1.17245 1.19955 0.80456 0.84003 0.87902 1.90733 1.52738 1.80605 1.17061 1.46237 1.55788 1.16576 1.15067 1.21937 1.00178 0.85617 0.92566 1.19354 0.95749 0.91508 0.96056 1.20976 1.38789 1.00929 0.95640 0.92221 1.24997 0.95456 0.98559 0.95215 1.69944 1.40286 1.29153 1.13646 0.86552 0.78616 0.81509 0.80720 1.20106 1.21226 1.20126 1.20830 0.94243 0.99527 0.99728 0.90174 0.88201 0.88259 0.75072 0.84320 0.85306 0.85407 0.90043 0.89830 0.74975 0.75368 0.91872 0.91846 0.95638 0.95654 0.92714 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 10.39 36.00 0.37 -0.06 16 2 C 0.51 3.45 7.78 -10.98 -0.09 3.37 16 3 O -0.53 -5.82 14.54 5.55 0.08 -5.73 16 4 N -0.67 -3.88 5.34 -9.86 -0.05 -3.93 16 5 C 0.14 1.11 6.30 -83.70 -0.53 0.59 16 6 C -0.11 -1.01 8.70 -39.39 -0.34 -1.35 16 7 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 8 C -0.11 -0.87 9.70 -39.55 -0.38 -1.25 16 9 C -0.09 -0.74 5.25 -104.65 -0.55 -1.29 16 10 C 0.16 1.45 5.80 -5.19 -0.03 1.42 16 11 N -0.70 -7.77 5.54 -61.91 -0.34 -8.11 16 12 C 0.51 7.35 7.89 -11.58 -0.09 7.26 16 13 O -0.52 -8.51 16.48 5.50 0.09 -8.42 16 14 C 0.50 8.40 7.89 -11.58 -0.09 8.31 16 15 O -0.53 -9.93 16.48 5.50 0.09 -9.84 16 16 N -0.69 -12.33 5.55 -60.73 -0.34 -12.66 16 17 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 18 C 0.01 0.27 5.09 -27.89 -0.14 0.12 16 19 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 23 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.12 -0.93 9.62 -39.39 -0.38 -1.31 16 28 H 0.08 0.02 7.92 -51.93 -0.41 -0.40 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.41 1.07 8.66 -40.82 -0.35 0.72 16 32 H 0.14 1.37 6.23 -52.49 -0.33 1.04 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.41 4.32 7.94 -40.82 -0.32 4.00 16 38 H 0.41 7.03 7.94 -40.82 -0.32 6.71 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -34.55 386.61 -7.93 -42.48 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.93 Total: 5.55 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.08 Total: 3.92 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.00 Total: -49.91 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.26 Total: -24.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.55 -7.93 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340370875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.509 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds