Wall clock time and date at job start Tue Mar 31 2020 19:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 120.00373 * 2 1 4 4 N 1.34783 * 119.99895 * 179.97438 * 2 1 3 5 5 C 1.39928 * 119.99984 * 184.62312 * 4 2 1 6 6 C 1.38892 * 120.07048 * 324.90096 * 5 4 2 7 7 C 1.38092 * 119.92696 * 180.02562 * 6 5 4 8 8 C 1.38304 * 120.07037 * 359.72027 * 7 6 5 9 9 C 1.38264 * 120.13996 * 0.55869 * 8 7 6 10 10 C 1.50699 * 119.96297 * 179.72224 * 9 8 7 11 11 N 1.46499 * 109.46742 * 269.72180 * 10 9 8 12 12 C 1.34778 * 119.99932 * 180.02562 * 11 10 9 13 13 O 1.21349 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.49454 * 120.00181 * 179.72480 * 12 11 10 15 15 O 1.21349 * 119.99762 * 0.27439 * 14 12 11 16 16 N 1.34778 * 119.99790 * 180.27003 * 14 12 11 17 17 C 1.46504 * 119.99560 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.46933 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47321 * 179.97438 * 18 17 16 20 20 H 1.08008 * 119.99700 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00399 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47355 * 60.00354 * 23 21 19 25 25 H 1.48501 * 109.46884 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47464 * 300.00009 * 23 21 19 27 27 C 1.38137 * 120.06773 * 359.44187 * 9 8 7 28 28 H 1.09000 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47137 * 299.99969 * 1 2 3 30 30 H 1.08995 * 109.47289 * 59.99916 * 1 2 3 31 31 H 0.97002 * 119.99711 * 4.63260 * 4 2 1 32 32 H 1.08001 * 120.03851 * 0.02562 * 6 5 4 33 33 H 1.07995 * 119.96313 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.93114 * 180.27158 * 8 7 6 35 35 H 1.08998 * 109.47098 * 149.72651 * 10 9 8 36 36 H 1.08995 * 109.47250 * 29.72187 * 10 9 8 37 37 H 0.96997 * 120.00134 * 359.97438 * 11 10 9 38 38 H 0.96997 * 120.00384 * 0.02562 * 16 14 12 39 39 H 1.09003 * 109.47128 * 300.00112 * 17 16 14 40 40 H 1.08994 * 109.47238 * 59.99962 * 17 16 14 41 41 H 1.08994 * 109.47399 * 300.00241 * 18 17 16 42 42 H 1.09002 * 109.47104 * 60.00177 * 18 17 16 43 43 H 0.96997 * 120.00693 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.03189 * 180.25540 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5767 -1.1692 0.0982 6 6 4.3178 -0.1600 -0.5029 7 6 5.6953 -0.1651 -0.4051 8 6 6.3365 -1.1706 0.2954 9 6 5.6020 -2.1798 0.8900 10 6 6.3052 -3.2768 1.6471 11 7 6.6126 -4.3805 0.7341 12 6 7.2446 -5.4787 1.1932 13 8 7.5595 -5.5531 2.3628 14 6 7.5527 -6.6073 0.2632 15 8 7.2382 -6.5328 -0.9064 16 7 8.1799 -7.7078 0.7236 17 6 8.4814 -8.8144 -0.1880 18 6 9.1895 -9.9309 0.5820 19 6 9.4991 -11.0694 -0.3555 20 1 9.2192 -11.0030 -1.3966 21 6 10.1407 -12.1953 0.1154 22 7 10.4820 -12.2759 1.3829 23 14 10.5250 -13.6062 -1.0469 24 1 11.4066 -13.1216 -2.1392 25 1 11.2122 -14.6900 -0.2995 26 1 9.2614 -14.1291 -1.6257 27 6 4.2238 -2.1803 0.7958 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6982 -2.0059 -0.0670 32 1 3.8174 0.6279 -1.0463 33 1 6.2721 0.6195 -0.8719 34 1 7.4137 -1.1699 0.3742 35 1 5.6597 -3.6369 2.4481 36 1 7.2306 -2.8889 2.0727 37 1 6.3605 -4.3212 -0.2007 38 1 8.4311 -7.7676 1.6586 39 1 7.5539 -9.1982 -0.6128 40 1 9.1283 -8.4586 -0.9898 41 1 10.1170 -9.5474 1.0071 42 1 8.5422 -10.2866 1.3835 43 1 10.9337 -13.0678 1.7142 44 1 3.6503 -2.9667 1.2641 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340370875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:25 Heat of formation + Delta-G solvation = -114.776831 kcal Electronic energy + Delta-G solvation = -26367.390134 eV Core-core repulsion = 22283.270782 eV Total energy + Delta-G solvation = -4084.119352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = -0.43 seconds Orbital eigenvalues (eV) -41.78376 -41.48059 -39.94240 -39.36461 -36.98577 -36.38042 -35.51938 -34.78434 -32.47385 -31.80617 -31.67700 -29.57300 -28.15140 -26.92613 -24.77829 -23.59937 -23.19403 -22.75529 -21.51287 -21.18693 -19.74525 -18.58410 -18.55415 -17.83925 -17.78485 -17.28186 -17.14565 -16.68569 -16.53880 -16.48002 -16.05921 -15.98281 -15.52968 -15.23178 -14.84068 -14.66952 -14.58601 -14.29292 -14.08462 -13.74622 -13.60971 -13.37795 -13.25423 -13.04685 -12.91788 -12.84741 -12.70502 -12.53770 -12.28849 -12.25840 -11.67563 -11.45327 -11.42236 -10.92553 -10.75381 -10.59842 -10.37243 -10.18287 -9.89674 -9.19899 -8.22165 -6.33451 0.13963 0.27391 0.33520 1.36980 1.44801 1.46390 1.54218 1.56735 2.09154 2.13540 2.40912 2.61979 2.90992 3.12752 3.46616 3.53264 3.77744 3.89559 4.13605 4.29909 4.31994 4.40213 4.40257 4.46592 4.54571 4.61966 4.63637 4.69093 4.82664 4.94351 5.07000 5.07900 5.09571 5.26557 5.32824 5.43455 5.48888 5.54182 5.56322 5.76418 5.92641 5.98632 6.14144 6.36345 6.40495 6.70644 6.80541 6.93891 7.09056 7.36045 8.89491 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.001606 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.910589 B =17425.193081 C =17811.384601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.504 3.496 3 O -0.578 6.578 4 N -0.664 5.664 5 C 0.128 3.872 6 C -0.128 4.128 7 C -0.108 4.108 8 C -0.114 4.114 9 C -0.094 4.094 10 C 0.163 3.837 11 N -0.682 5.682 12 C 0.516 3.484 13 O -0.540 6.540 14 C 0.500 3.500 15 O -0.549 6.549 16 N -0.689 5.689 17 C 0.138 3.862 18 C 0.018 3.982 19 C -0.546 4.546 20 H 0.065 0.935 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.267 1.267 27 C -0.121 4.121 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.429 0.571 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.419 0.581 38 H 0.415 0.585 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 25.722 -1.757 32.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.457 6.457 4 N -0.311 5.311 5 C 0.033 3.967 6 C -0.149 4.149 7 C -0.127 4.127 8 C -0.133 4.133 9 C -0.095 4.095 10 C 0.041 3.959 11 N -0.336 5.336 12 C 0.297 3.703 13 O -0.417 6.417 14 C 0.281 3.719 15 O -0.428 6.428 16 N -0.340 5.340 17 C 0.015 3.985 18 C -0.020 4.020 19 C -0.585 4.585 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.192 1.192 27 C -0.142 4.142 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.268 0.732 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.088 26.349 -1.604 32.576 hybrid contribution 0.267 -1.147 -0.334 1.224 sum -18.821 25.202 -1.939 31.514 Atomic orbital electron populations 1.21903 0.87017 1.06878 1.06331 1.21876 0.92619 0.82413 0.73586 1.90719 1.71657 1.33036 1.50257 1.43695 1.04442 1.10838 1.72133 1.17862 0.83779 0.97057 0.97979 1.21402 0.94523 0.99170 0.99756 1.21278 0.93791 0.98946 0.98664 1.21323 1.00967 0.93851 0.97139 1.19540 0.93222 0.96459 1.00313 1.20385 1.00684 0.83698 0.91122 1.45790 1.56978 1.15900 1.14897 1.19916 0.79237 0.83788 0.87387 1.90770 1.52583 1.80641 1.17702 1.20344 0.79418 0.84106 0.88042 1.90723 1.53184 1.80968 1.17943 1.46071 1.56465 1.16536 1.14903 1.21473 0.99512 0.85355 0.92146 1.19180 0.94924 0.92301 0.95564 1.21430 1.38774 1.01935 0.96340 0.91699 1.25904 0.95229 1.01356 0.96815 1.70065 1.41085 1.30036 1.15481 0.85465 0.78711 0.78050 0.78606 1.19244 1.20890 1.19200 1.20997 0.94215 0.99657 0.99284 0.87266 0.87672 0.87582 0.73182 0.85715 0.83990 0.84214 0.89297 0.89374 0.74375 0.74891 0.91975 0.92058 0.97402 0.97342 0.92597 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 10.39 71.23 0.74 0.23 16 2 C 0.50 6.46 7.78 87.65 0.68 7.14 16 3 O -0.58 -13.03 14.54 -3.05 -0.04 -13.07 16 4 N -0.66 -6.80 5.34 -303.50 -1.62 -8.42 16 5 C 0.13 1.96 6.30 38.15 0.24 2.20 16 6 C -0.13 -2.32 8.70 22.39 0.19 -2.13 16 7 C -0.11 -1.68 10.04 22.25 0.22 -1.46 16 8 C -0.11 -1.65 9.70 22.29 0.22 -1.43 16 9 C -0.09 -1.37 5.25 -19.88 -0.10 -1.47 16 10 C 0.16 2.60 5.80 85.63 0.50 3.09 16 11 N -0.68 -13.79 5.54 -468.15 -2.59 -16.38 16 12 C 0.52 14.22 7.89 87.27 0.69 14.91 16 13 O -0.54 -17.02 16.48 -3.24 -0.05 -17.07 16 14 C 0.50 16.40 7.89 87.27 0.69 17.09 16 15 O -0.55 -19.81 16.48 -3.24 -0.05 -19.87 16 16 N -0.69 -24.53 5.55 -464.41 -2.58 -27.11 16 17 C 0.14 5.69 5.61 86.38 0.48 6.18 16 18 C 0.02 0.89 5.09 29.85 0.15 1.04 16 19 C -0.55 -29.92 9.11 25.60 0.23 -29.69 16 20 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 21 C 0.01 0.32 5.46 84.66 0.46 0.78 16 22 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 23 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 C -0.12 -1.62 9.62 22.39 0.22 -1.41 16 28 H 0.11 -0.30 7.92 -2.39 -0.02 -0.32 16 29 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.43 1.32 8.66 -92.71 -0.80 0.52 16 32 H 0.12 2.60 6.23 -2.91 -0.02 2.58 16 33 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 36 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.42 7.90 7.94 -92.71 -0.74 7.17 16 38 H 0.41 14.21 7.94 -92.71 -0.74 13.48 16 39 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -74.37 386.61 -0.23 -74.60 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -1.21 Total: 21.32 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.61 Total: 15.08 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -6.51 Total: -106.03 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.15 Total: -50.01 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -74.37 -0.23 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340370875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.179 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.43 seconds