Wall clock time and date at job start Tue Mar 31 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47188 * 2 1 4 4 C 1.46507 * 119.99896 * 275.00225 * 3 2 1 5 5 C 1.50697 * 109.46936 * 274.99391 * 4 3 2 6 6 H 1.08006 * 120.00217 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00251 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47473 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47136 * 120.00526 * 9 7 5 12 12 H 1.48508 * 109.46826 * 240.00180 * 9 7 5 13 13 S 1.65601 * 120.00284 * 94.99638 * 3 2 1 14 14 O 1.42104 * 106.40162 * 336.46707 * 13 3 2 15 15 O 1.42097 * 106.40701 * 203.54160 * 13 3 2 16 16 N 1.65608 * 107.21642 * 90.00037 * 13 3 2 17 17 C 1.47417 * 125.64870 * 269.69796 * 16 13 3 18 18 C 1.55131 * 104.72514 * 155.81909 * 17 16 13 19 19 C 1.55159 * 101.48383 * 37.28978 * 18 17 16 20 20 H 1.08995 * 110.71661 * 82.70119 * 19 18 17 21 21 C 1.50699 * 110.87032 * 205.90292 * 19 18 17 22 22 O 1.21285 * 120.00075 * 113.61594 * 21 19 18 23 23 N 1.34784 * 119.99940 * 293.61211 * 21 19 18 24 24 C 1.46497 * 119.99691 * 179.97438 * 23 21 19 25 25 C 1.46490 * 119.99885 * 0.02562 * 23 21 19 26 26 C 1.47021 * 125.64657 * 89.99986 * 16 13 3 27 27 H 1.08996 * 109.47047 * 300.00042 * 1 2 3 28 28 H 1.09002 * 109.46761 * 60.00221 * 1 2 3 29 29 H 1.08996 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47581 * 240.00319 * 2 1 3 31 31 H 1.08999 * 109.47488 * 119.99772 * 2 1 3 32 32 H 1.08999 * 109.47296 * 34.99751 * 4 3 2 33 33 H 1.09004 * 109.46704 * 155.00325 * 4 3 2 34 34 H 0.97002 * 119.99793 * 179.97438 * 8 7 5 35 35 H 1.09009 * 110.36701 * 274.74336 * 17 16 13 36 36 H 1.09000 * 110.37066 * 37.06616 * 17 16 13 37 37 H 1.09007 * 111.18716 * 279.18821 * 18 17 16 38 38 H 1.09000 * 110.91077 * 155.27459 * 18 17 16 39 39 H 1.08999 * 109.47401 * 0.02562 * 24 23 21 40 40 H 1.09007 * 109.46619 * 119.99746 * 24 23 21 41 41 H 1.08996 * 109.47283 * 239.99630 * 24 23 21 42 42 H 1.08999 * 109.47331 * 90.00254 * 25 23 21 43 43 H 1.09007 * 109.47226 * 210.00158 * 25 23 21 44 44 H 1.08998 * 109.47594 * 330.00092 * 25 23 21 45 45 H 1.08994 * 109.88428 * 300.44812 * 26 16 13 46 46 H 1.09006 * 109.88066 * 61.45207 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3606 -3.0849 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9636 -3.8517 10 1 6.2450 1.0158 -2.9771 11 1 5.3014 1.3459 -5.1861 12 1 6.2971 3.2133 -4.0019 13 16 2.4122 2.1203 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5187 1.1998 16 7 4.0144 1.8137 1.7138 17 6 4.5488 0.6626 2.4638 18 6 5.9960 0.4844 1.9342 19 6 6.4369 1.9590 1.7381 20 1 6.7804 2.3872 2.6798 21 6 7.5094 2.0631 0.6846 22 8 7.2795 2.6339 -0.3605 23 7 8.7242 1.5219 0.9038 24 6 9.7666 1.6227 -0.1206 25 6 9.0018 0.8321 2.1660 26 6 5.1393 2.6480 1.2661 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3617 1.8097 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 3.2794 3.5880 -4.5379 35 1 4.5572 0.8770 3.5325 36 1 3.9580 -0.2304 2.2598 37 1 6.0053 -0.0555 0.9873 38 1 6.6219 -0.0156 2.6734 39 1 9.3780 2.1652 -0.9823 40 1 10.6258 2.1557 0.2866 41 1 10.0718 0.6225 -0.4280 42 1 8.7511 -0.2239 2.0657 43 1 10.0594 0.9328 2.4102 44 1 8.4016 1.2741 2.9613 45 1 5.1344 2.7244 0.1789 46 1 5.0626 3.6416 1.7077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364883312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:40 Heat of formation + Delta-G solvation = -99.694121 kcal Electronic energy + Delta-G solvation = -29387.147849 eV Core-core repulsion = 25439.126483 eV Total energy + Delta-G solvation = -3948.021366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.20632 -37.52991 -36.63849 -35.95798 -35.55042 -35.17597 -32.60126 -31.27904 -29.88453 -29.00199 -28.02579 -26.53704 -26.18656 -23.06045 -22.56984 -21.89564 -21.51620 -18.98703 -18.45770 -17.50420 -17.19642 -16.77528 -16.21597 -15.98372 -15.62593 -15.52140 -15.01116 -14.37562 -13.93132 -13.83326 -13.55298 -13.46396 -13.17074 -12.90443 -12.85363 -12.78667 -12.65335 -12.27158 -12.08592 -11.99153 -11.91090 -11.78892 -11.62943 -11.49557 -11.30148 -11.15900 -11.09685 -10.96034 -10.80704 -10.80023 -10.42375 -10.32186 -9.93342 -9.65538 -9.63015 -8.75231 -8.59121 -8.36758 -7.98536 -5.99431 -4.05149 1.25947 2.70408 2.94049 3.38210 3.48746 3.49653 3.56923 4.12628 4.38173 4.50414 4.52821 4.67985 4.83703 5.04407 5.05523 5.14193 5.31025 5.34950 5.37354 5.41014 5.43721 5.45033 5.47661 5.62691 5.71130 5.79384 5.80723 5.83947 6.05398 6.11784 6.12440 6.27374 6.35542 6.40955 6.58388 6.69271 6.70457 6.83137 7.28116 7.42288 7.53139 7.72810 7.97525 8.24956 8.25827 8.99532 9.62288 11.08501 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.006475 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.264963 B = 4323.609149 C = 6250.304683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.282 1.282 13 S 2.798 3.202 14 O -0.995 6.995 15 O -0.973 6.973 16 N -1.016 6.016 17 C 0.128 3.872 18 C -0.119 4.119 19 C -0.117 4.117 20 H 0.106 0.894 21 C 0.518 3.482 22 O -0.511 6.511 23 N -0.627 5.627 24 C 0.080 3.920 25 C 0.080 3.920 26 C 0.131 3.869 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.277 -8.243 13.338 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.123 3.877 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.208 1.208 13 S 2.808 3.192 14 O -0.980 6.980 15 O -0.957 6.957 16 N -0.855 5.855 17 C 0.002 3.998 18 C -0.158 4.158 19 C -0.139 4.139 20 H 0.124 0.876 21 C 0.305 3.695 22 O -0.384 6.384 23 N -0.363 5.363 24 C -0.062 4.062 25 C -0.063 4.063 26 C 0.005 3.995 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.445 -7.263 13.127 17.728 hybrid contribution 1.393 -0.497 -0.767 1.666 sum 10.838 -7.761 12.360 18.178 Atomic orbital electron populations 1.22206 0.96916 1.01346 1.02416 1.20967 0.93650 0.83023 1.01936 1.57809 1.78070 1.22899 1.24367 1.19217 0.97428 0.92183 0.78890 1.21519 1.01889 1.27939 1.05884 0.91983 1.24897 0.97006 0.94685 0.96909 1.69953 1.35961 1.30057 1.17064 0.86436 0.84130 0.78575 0.78270 1.19619 1.21722 1.20840 1.01395 0.71638 0.73372 0.72802 1.93533 1.69960 1.76624 1.57858 1.93576 1.85473 1.30737 1.85955 1.59149 1.23800 1.34593 1.67946 1.21883 0.93749 0.88749 0.95450 1.22886 0.96145 0.94204 1.02551 1.22296 0.94685 0.98661 0.98287 0.87644 1.20457 0.82535 0.78159 0.88319 1.90811 1.79471 1.41377 1.26754 1.47667 1.12779 1.57572 1.18258 1.21650 0.90098 1.01778 0.92699 1.21827 1.01941 0.97078 0.85499 1.21634 0.82107 0.92455 1.03302 0.92675 0.92027 0.92372 0.90251 0.92175 0.94401 0.93250 0.92821 0.91475 0.90821 0.89851 0.89700 0.89401 0.92501 0.92501 0.92491 0.91303 0.90771 0.87406 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.33 6.06 -4.04 -0.02 2.30 16 3 N -0.99 -21.16 2.83 -115.66 -0.33 -21.49 16 4 C 0.24 6.29 5.44 -5.19 -0.03 6.27 16 5 C -0.53 -14.56 8.92 -34.44 -0.31 -14.86 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.90 22.83 29.54 -169.99 -5.02 17.80 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 13 S 2.80 58.20 6.31 -107.50 -0.68 57.53 16 14 O -1.00 -20.55 16.69 -57.17 -0.95 -21.50 16 15 O -0.97 -23.71 16.27 -57.17 -0.93 -24.64 16 16 N -1.02 -17.82 3.75 -111.29 -0.42 -18.23 16 17 C 0.13 1.65 6.99 -2.41 -0.02 1.63 16 18 C -0.12 -1.33 5.76 -24.46 -0.14 -1.47 16 19 C -0.12 -1.54 2.35 -89.94 -0.21 -1.75 16 20 H 0.11 1.04 7.28 -51.93 -0.38 0.67 16 21 C 0.52 7.99 7.05 -10.98 -0.08 7.92 16 22 O -0.51 -10.62 14.75 5.55 0.08 -10.54 16 23 N -0.63 -7.26 3.27 -189.52 -0.62 -7.88 16 24 C 0.08 0.87 10.69 59.85 0.64 1.50 16 25 C 0.08 0.55 9.09 59.84 0.54 1.09 16 26 C 0.13 2.33 6.41 -3.07 -0.02 2.31 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.06 0.94 7.61 -51.93 -0.40 0.55 16 32 H 0.04 1.01 8.11 -51.93 -0.42 0.58 16 33 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.08 8.05 -51.93 -0.42 0.67 16 38 H 0.08 0.61 6.79 -51.93 -0.35 0.26 16 39 H 0.09 1.21 6.90 -51.93 -0.36 0.85 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 43 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 44 H 0.07 0.42 6.06 -51.93 -0.31 0.11 16 45 H 0.11 2.40 6.34 -51.93 -0.33 2.07 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -36.50 381.75 -9.24 -45.74 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.50 Total: -1.05 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.64 Total: 4.43 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -0.63 Total: -73.51 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -1.80 Total: -56.69 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.68 Total: 57.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.50 -9.24 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364883312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.957 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds