Wall clock time and date at job start Tue Mar 31 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47188 * 2 1 4 4 C 1.46507 * 119.99896 * 275.00225 * 3 2 1 5 5 C 1.50697 * 109.46936 * 274.99391 * 4 3 2 6 6 H 1.08006 * 120.00217 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00251 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47473 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47136 * 120.00526 * 9 7 5 12 12 H 1.48508 * 109.46826 * 240.00180 * 9 7 5 13 13 S 1.65601 * 120.00284 * 94.99638 * 3 2 1 14 14 O 1.42104 * 106.40162 * 336.46707 * 13 3 2 15 15 O 1.42097 * 106.40701 * 203.54160 * 13 3 2 16 16 N 1.65608 * 107.21642 * 90.00037 * 13 3 2 17 17 C 1.47417 * 125.64870 * 269.69796 * 16 13 3 18 18 C 1.55131 * 104.72514 * 155.81909 * 17 16 13 19 19 C 1.55159 * 101.48383 * 37.28978 * 18 17 16 20 20 H 1.08995 * 110.71661 * 82.70119 * 19 18 17 21 21 C 1.50699 * 110.87032 * 205.90292 * 19 18 17 22 22 O 1.21285 * 120.00075 * 113.61594 * 21 19 18 23 23 N 1.34784 * 119.99940 * 293.61211 * 21 19 18 24 24 C 1.46497 * 119.99691 * 179.97438 * 23 21 19 25 25 C 1.46490 * 119.99885 * 0.02562 * 23 21 19 26 26 C 1.47021 * 125.64657 * 89.99986 * 16 13 3 27 27 H 1.08996 * 109.47047 * 300.00042 * 1 2 3 28 28 H 1.09002 * 109.46761 * 60.00221 * 1 2 3 29 29 H 1.08996 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47581 * 240.00319 * 2 1 3 31 31 H 1.08999 * 109.47488 * 119.99772 * 2 1 3 32 32 H 1.08999 * 109.47296 * 34.99751 * 4 3 2 33 33 H 1.09004 * 109.46704 * 155.00325 * 4 3 2 34 34 H 0.97002 * 119.99793 * 179.97438 * 8 7 5 35 35 H 1.09009 * 110.36701 * 274.74336 * 17 16 13 36 36 H 1.09000 * 110.37066 * 37.06616 * 17 16 13 37 37 H 1.09007 * 111.18716 * 279.18821 * 18 17 16 38 38 H 1.09000 * 110.91077 * 155.27459 * 18 17 16 39 39 H 1.08999 * 109.47401 * 0.02562 * 24 23 21 40 40 H 1.09007 * 109.46619 * 119.99746 * 24 23 21 41 41 H 1.08996 * 109.47283 * 239.99630 * 24 23 21 42 42 H 1.08999 * 109.47331 * 90.00254 * 25 23 21 43 43 H 1.09007 * 109.47226 * 210.00158 * 25 23 21 44 44 H 1.08998 * 109.47594 * 330.00092 * 25 23 21 45 45 H 1.08994 * 109.88428 * 300.44812 * 26 16 13 46 46 H 1.09006 * 109.88066 * 61.45207 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3606 -3.0849 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9636 -3.8517 10 1 6.2450 1.0158 -2.9771 11 1 5.3014 1.3459 -5.1861 12 1 6.2971 3.2133 -4.0019 13 16 2.4122 2.1203 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5187 1.1998 16 7 4.0144 1.8137 1.7138 17 6 4.5488 0.6626 2.4638 18 6 5.9960 0.4844 1.9342 19 6 6.4369 1.9590 1.7381 20 1 6.7804 2.3872 2.6798 21 6 7.5094 2.0631 0.6846 22 8 7.2795 2.6339 -0.3605 23 7 8.7242 1.5219 0.9038 24 6 9.7666 1.6227 -0.1206 25 6 9.0018 0.8321 2.1660 26 6 5.1393 2.6480 1.2661 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3617 1.8097 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 3.2794 3.5880 -4.5379 35 1 4.5572 0.8770 3.5325 36 1 3.9580 -0.2304 2.2598 37 1 6.0053 -0.0555 0.9873 38 1 6.6219 -0.0156 2.6734 39 1 9.3780 2.1652 -0.9823 40 1 10.6258 2.1557 0.2866 41 1 10.0718 0.6225 -0.4280 42 1 8.7511 -0.2239 2.0657 43 1 10.0594 0.9328 2.4102 44 1 8.4016 1.2741 2.9613 45 1 5.1344 2.7244 0.1789 46 1 5.0626 3.6416 1.7077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364883312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:38 Heat of formation + Delta-G solvation = -128.118313 kcal Electronic energy + Delta-G solvation = -29388.380414 eV Core-core repulsion = 25439.126483 eV Total energy + Delta-G solvation = -3949.253931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.30670 -38.70461 -38.36166 -37.69208 -36.92678 -36.57328 -34.72099 -32.44413 -31.55077 -30.11992 -28.79459 -28.51018 -27.10092 -24.96656 -23.81647 -23.24428 -22.79424 -20.02650 -19.98019 -18.83739 -18.76621 -18.39727 -18.11295 -17.26742 -17.01215 -16.61498 -16.46192 -16.00892 -15.50839 -15.04708 -14.87774 -14.69340 -14.64081 -14.42939 -13.98760 -13.83204 -13.80773 -13.63889 -13.39209 -13.34705 -13.25452 -13.21010 -13.09053 -13.05349 -12.81231 -12.74987 -12.73445 -12.45547 -12.29474 -12.21980 -12.18362 -11.81954 -11.75640 -11.59098 -10.81057 -10.61712 -10.01154 -9.76230 -9.63968 -8.21621 -6.31930 -0.37020 1.29461 1.39753 1.47907 1.60507 1.90418 2.09552 2.38835 2.54832 3.11761 3.19018 3.34856 3.66902 3.72615 3.95549 4.11596 4.31789 4.36333 4.41329 4.44421 4.45630 4.48186 4.54925 4.60053 4.69619 4.80173 4.81918 4.87603 4.93331 4.95663 5.01591 5.05934 5.09907 5.13098 5.23014 5.23754 5.38335 5.44264 5.55682 5.57410 5.73832 5.96934 6.06948 6.35318 6.79382 7.19417 7.38143 8.86836 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.006475 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.264963 B = 4323.609149 C = 6250.304683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.997 5.997 4 C 0.263 3.737 5 C -0.524 4.524 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.927 5.927 9 Si 0.956 3.044 10 H -0.271 1.271 11 H -0.275 1.275 12 H -0.295 1.295 13 S 2.808 3.192 14 O -0.992 6.992 15 O -1.018 7.018 16 N -1.017 6.017 17 C 0.113 3.887 18 C -0.105 4.105 19 C -0.105 4.105 20 H 0.150 0.850 21 C 0.508 3.492 22 O -0.582 6.582 23 N -0.620 5.620 24 C 0.076 3.924 25 C 0.068 3.932 26 C 0.126 3.874 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.013 0.987 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.141 0.859 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -11.243 16.250 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.838 5.838 4 C 0.139 3.861 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.567 5.567 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.222 1.222 13 S 2.819 3.181 14 O -0.976 6.976 15 O -1.003 7.003 16 N -0.858 5.858 17 C -0.011 4.011 18 C -0.144 4.144 19 C -0.128 4.128 20 H 0.168 0.832 21 C 0.297 3.703 22 O -0.462 6.462 23 N -0.353 5.353 24 C -0.067 4.067 25 C -0.074 4.074 26 C -0.001 4.001 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.621 -10.341 16.092 22.381 hybrid contribution 0.787 0.394 -1.558 1.789 sum 12.408 -9.947 14.534 21.544 Atomic orbital electron populations 1.22192 0.95691 1.03387 1.01334 1.21280 0.94803 0.81129 1.03226 1.57742 1.79013 1.24236 1.22783 1.18674 0.96336 0.90612 0.80436 1.21725 1.02243 1.26987 1.05428 0.91813 1.25608 0.99809 0.94891 0.97794 1.70048 1.37596 1.31402 1.17685 0.85536 0.80407 0.77763 0.78019 1.19527 1.20080 1.22172 1.00853 0.72409 0.72330 0.72539 1.93525 1.70560 1.76223 1.57268 1.93515 1.86552 1.33748 1.86466 1.58866 1.22495 1.36284 1.68124 1.22391 0.94655 0.87300 0.96743 1.22935 0.95750 0.92660 1.03081 1.22314 0.91577 0.99888 0.98991 0.83236 1.20901 0.83990 0.77667 0.87790 1.90788 1.80915 1.44860 1.29600 1.47822 1.11426 1.56230 1.19834 1.21742 0.90423 1.02760 0.91735 1.22232 1.04077 0.97598 0.83446 1.21554 0.84813 0.93387 1.00307 0.93320 0.93541 0.88755 0.90393 0.89351 0.95725 0.96944 0.92687 0.88153 0.89852 0.91970 0.84153 0.93303 0.89718 0.90566 0.90770 0.88929 0.88841 0.92637 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 10.24 71.98 0.74 -4.49 16 2 C 0.12 4.19 6.06 86.38 0.52 4.71 16 3 N -1.00 -43.48 2.83 -519.83 -1.47 -44.95 16 4 C 0.26 14.22 5.44 85.63 0.47 14.68 16 5 C -0.52 -29.74 8.92 25.60 0.23 -29.52 16 6 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 7 C 0.02 1.09 5.46 84.65 0.46 1.55 16 8 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 9 Si 0.96 48.80 29.54 68.60 2.03 50.83 16 10 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.29 -15.56 7.11 99.48 0.71 -14.86 16 13 S 2.81 117.93 6.31 -56.49 -0.36 117.57 16 14 O -0.99 -39.64 16.69 -128.00 -2.14 -41.78 16 15 O -1.02 -52.00 16.27 -128.00 -2.08 -54.08 16 16 N -1.02 -34.81 3.75 -506.03 -1.90 -36.71 16 17 C 0.11 2.51 6.99 86.93 0.61 3.12 16 18 C -0.11 -1.92 5.76 32.06 0.18 -1.74 16 19 C -0.11 -2.52 2.35 -10.35 -0.02 -2.55 16 20 H 0.15 2.25 7.28 -2.39 -0.02 2.24 16 21 C 0.51 15.24 7.05 87.66 0.62 15.86 16 22 O -0.58 -25.33 14.75 -3.05 -0.04 -25.37 16 23 N -0.62 -12.71 3.27 -871.90 -2.85 -15.56 16 24 C 0.08 1.51 10.69 127.77 1.37 2.88 16 25 C 0.07 0.57 9.09 127.77 1.16 1.73 16 26 C 0.13 4.54 6.41 86.73 0.56 5.09 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 31 H 0.09 2.55 7.61 -2.39 -0.02 2.53 16 32 H 0.02 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.01 0.77 6.91 -2.38 -0.02 0.75 16 34 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16 35 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.44 8.05 -2.38 -0.02 1.42 16 38 H 0.14 1.04 6.79 -2.39 -0.02 1.02 16 39 H 0.05 1.38 6.90 -2.39 -0.02 1.36 16 40 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 0.45 7.79 -2.39 -0.02 0.43 16 43 H 0.09 0.42 8.07 -2.38 -0.02 0.40 16 44 H 0.09 0.47 6.06 -2.39 -0.01 0.45 16 45 H 0.06 2.62 6.34 -2.39 -0.02 2.61 16 46 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -86.89 381.75 -0.68 -87.58 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.96 Total: 8.52 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 6.89 Total: 11.33 kcal Atomic # 7 Polarization: -148.66 SS G_CDS: -5.94 Total: -154.60 kcal Atomic # 8 Polarization: -116.97 SS G_CDS: -4.26 Total: -121.24 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Atomic # 16 Polarization: 117.93 SS G_CDS: -0.36 Total: 117.57 kcal Total: -86.89 -0.68 -87.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364883312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.541 kcal (2) G-P(sol) polarization free energy of solvation -86.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds