Wall clock time and date at job start Tue Mar 31 2020 19:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99733 * 2 1 4 4 N 1.34777 * 119.99889 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99822 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47569 * 35.00055 * 5 4 2 7 7 C 1.52995 * 109.47115 * 155.00140 * 5 4 2 8 8 C 1.50697 * 109.47291 * 294.99921 * 7 5 4 9 9 O 1.21286 * 119.99874 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00205 * 180.02562 * 8 7 5 11 11 C 1.39924 * 119.99986 * 174.72880 * 10 8 7 12 12 C 1.38876 * 120.06988 * 326.54968 * 11 10 8 13 13 C 1.38112 * 119.92915 * 179.76834 * 12 11 10 14 14 C 1.38284 * 120.07079 * 0.48327 * 13 12 11 15 15 C 1.50698 * 119.93172 * 179.74473 * 14 13 12 16 16 C 1.50699 * 109.47114 * 270.02653 * 15 14 13 17 17 H 1.07994 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99964 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00183 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99887 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47222 * 89.99670 * 20 18 16 22 22 H 1.48502 * 109.46706 * 209.99638 * 20 18 16 23 23 H 1.48496 * 109.46825 * 329.99623 * 20 18 16 24 24 C 1.38284 * 120.14090 * 359.77324 * 14 13 12 25 25 C 1.38114 * 120.06908 * 359.97438 * 24 14 13 26 26 C 1.50702 * 109.46783 * 274.99916 * 5 4 2 27 27 N 1.34781 * 119.99845 * 180.02562 * 26 5 4 28 28 O 1.21280 * 120.00277 * 359.97438 * 26 5 4 29 29 H 1.09004 * 109.47331 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46954 * 120.00228 * 1 2 3 31 31 H 1.08999 * 109.47793 * 240.00183 * 1 2 3 32 32 H 0.97004 * 120.00040 * 0.02562 * 4 2 1 33 33 H 1.09000 * 109.47398 * 54.99691 * 7 5 4 34 34 H 1.09004 * 109.47253 * 174.99573 * 7 5 4 35 35 H 0.96997 * 120.00157 * 354.72833 * 10 8 7 36 36 H 1.08003 * 120.03544 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.96829 * 180.21788 * 13 12 11 38 38 H 1.09001 * 109.47105 * 30.02676 * 15 14 13 39 39 H 1.08998 * 109.47342 * 150.02817 * 15 14 13 40 40 H 0.96998 * 120.00221 * 180.02562 * 19 18 16 41 41 H 1.07996 * 119.96790 * 179.97438 * 24 14 13 42 42 H 1.08003 * 120.03540 * 179.97438 * 25 24 14 43 43 H 0.97006 * 119.99602 * 359.97438 * 27 26 5 44 44 H 0.96991 * 120.00048 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3253 0.5905 7 6 4.1556 -2.4744 0.6112 8 6 3.7564 -2.5405 2.0628 9 8 3.1266 -1.6314 2.5605 10 7 4.1002 -3.6095 2.8082 11 6 3.8269 -3.6226 4.1804 12 6 3.8737 -2.4422 4.9105 13 6 3.5987 -2.4576 6.2639 14 6 3.2869 -3.6484 6.8941 15 6 2.9931 -3.6626 8.3720 16 6 4.2729 -3.8836 9.1365 17 1 5.2057 -4.0015 8.6053 18 6 4.2530 -3.9341 10.5143 19 7 5.3697 -4.1275 11.1814 20 14 2.6394 -3.7294 11.4332 21 1 2.0057 -5.0588 11.6228 22 1 2.8995 -3.1114 12.7582 23 1 1.7307 -2.8552 10.6489 24 6 3.2447 -4.8264 6.1709 25 6 3.5135 -4.8168 4.8163 26 6 4.1487 -1.0437 -1.4142 27 7 5.4739 -1.0228 -1.6591 28 8 3.3609 -0.9640 -2.3329 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3634 -0.5138 0.8899 32 1 1.6958 -2.0073 0.0005 33 1 3.7212 -3.3188 0.0761 34 1 5.2420 -2.5135 0.5309 35 1 4.5370 -4.3698 2.3934 36 1 4.1215 -1.5125 4.4199 37 1 3.6315 -1.5395 6.8316 38 1 2.5553 -2.7082 8.6646 39 1 2.2928 -4.4673 8.5956 40 1 5.3556 -4.1634 12.1506 41 1 3.0013 -5.7548 6.6660 42 1 3.4808 -5.7372 4.2521 43 1 6.1039 -1.0869 -0.9243 44 1 5.7975 -0.9429 -2.5700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001419808795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:42 Heat of formation + Delta-G solvation = -89.051522 kcal Electronic energy + Delta-G solvation = -27674.313601 eV Core-core repulsion = 23591.309781 eV Total energy + Delta-G solvation = -4083.003819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07340 -40.09833 -38.96314 -38.34782 -35.43890 -34.92582 -34.17154 -33.04788 -31.92002 -30.85299 -30.44389 -29.42047 -27.29548 -25.58506 -23.04362 -22.50141 -21.48218 -20.81646 -20.59715 -20.08668 -18.46462 -17.68832 -17.57707 -17.06183 -16.79978 -16.64372 -16.16856 -15.58222 -15.19076 -15.10085 -14.98942 -14.38350 -14.22944 -14.10012 -13.93003 -13.69233 -13.24633 -13.11751 -12.93474 -12.62115 -12.49823 -12.40745 -12.35939 -12.11437 -11.69376 -11.58047 -10.92444 -10.69649 -10.51378 -10.37587 -10.20454 -10.14161 -10.07491 -9.94876 -9.64320 -9.36792 -9.32452 -8.61176 -8.42920 -7.51778 -6.10341 -4.09598 1.66039 1.91927 2.11790 2.43915 2.48531 2.75327 2.84551 3.26710 3.30020 3.35057 3.38116 3.95211 4.22900 4.34195 4.39200 4.49092 4.56008 4.72694 4.78116 5.06669 5.18984 5.20844 5.22479 5.30112 5.42198 5.64903 5.77283 5.85212 5.93779 6.01416 6.03971 6.31787 6.47702 6.60806 6.70512 6.82341 6.89710 6.99448 6.99795 7.21911 7.30624 7.50006 7.54991 7.67508 7.78462 7.95408 8.05465 8.46242 8.94558 9.50022 11.02501 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002224 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.171014 B =12589.166328 C =13232.963731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.527 3.473 3 O -0.545 6.545 4 N -0.702 5.702 5 C 0.145 3.855 6 H 0.126 0.874 7 C -0.147 4.147 8 C 0.506 3.494 9 O -0.504 6.504 10 N -0.666 5.666 11 C 0.106 3.894 12 C -0.115 4.115 13 C -0.105 4.105 14 C -0.036 4.036 15 C 0.014 3.986 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.106 4.106 25 C -0.141 4.141 26 C 0.508 3.492 27 N -0.853 5.853 28 O -0.529 6.529 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.406 0.594 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.402 0.598 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 0.095 -26.199 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.315 3.685 3 O -0.422 6.422 4 N -0.353 5.353 5 C 0.035 3.965 6 H 0.143 0.857 7 C -0.188 4.188 8 C 0.292 3.708 9 O -0.378 6.378 10 N -0.311 5.311 11 C 0.014 3.986 12 C -0.135 4.135 13 C -0.123 4.123 14 C -0.036 4.036 15 C -0.024 4.024 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.124 4.124 25 C -0.162 4.162 26 C 0.291 3.709 27 N -0.418 5.418 28 O -0.404 6.404 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.238 0.762 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.241 0.759 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.231 0.769 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.319 1.585 -26.163 26.420 hybrid contribution -0.052 -0.892 0.395 0.976 sum -3.371 0.693 -25.768 25.997 Atomic orbital electron populations 1.21880 0.91351 1.05603 1.04302 1.20684 0.90659 0.83059 0.74121 1.90701 1.70806 1.31398 1.49306 1.45419 1.04586 1.09424 1.75891 1.20472 0.83318 0.99910 0.92807 0.85660 1.21957 1.04216 0.98726 0.93914 1.20373 0.79871 0.82635 0.87928 1.90816 1.37281 1.36797 1.72917 1.43362 1.60251 1.20170 1.07358 1.17492 1.04280 0.95002 0.81843 1.20964 1.01538 0.97099 0.93886 1.20980 0.99543 0.98491 0.93319 1.20319 0.94010 0.92104 0.97194 1.18816 0.98064 0.97510 0.87965 1.20921 0.93257 1.49870 0.91038 0.90826 1.25005 0.96251 0.94485 0.97530 1.69896 1.26500 1.49845 1.07580 0.86806 0.84456 0.78895 0.79384 1.20170 1.21243 1.18881 1.20870 1.00493 0.98428 0.92643 1.20730 1.03845 0.96046 0.95542 1.21075 0.82714 0.75382 0.91742 1.43865 1.07240 1.77748 1.12990 1.90750 1.55368 1.48319 1.45942 0.88942 0.89393 0.89133 0.76217 0.87378 0.86655 0.75874 0.85754 0.85963 0.95354 0.95816 0.92584 0.85884 0.86647 0.76925 0.76561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.32 36.01 0.37 -1.03 16 2 C 0.53 6.35 7.77 -10.99 -0.09 6.27 16 3 O -0.55 -8.89 16.75 5.56 0.09 -8.80 16 4 N -0.70 -6.62 3.75 -54.94 -0.21 -6.83 16 5 C 0.15 1.21 1.94 -69.08 -0.13 1.08 16 6 H 0.13 1.30 7.39 -51.93 -0.38 0.91 16 7 C -0.15 -0.73 5.19 -27.89 -0.14 -0.88 16 8 C 0.51 4.76 7.43 -10.99 -0.08 4.68 16 9 O -0.50 -6.98 13.05 5.55 0.07 -6.91 16 10 N -0.67 -6.26 5.34 -9.86 -0.05 -6.31 16 11 C 0.11 1.50 6.28 -83.69 -0.53 0.98 16 12 C -0.11 -1.92 8.66 -39.39 -0.34 -2.26 16 13 C -0.10 -1.99 9.69 -39.61 -0.38 -2.37 16 14 C -0.04 -0.73 5.07 -104.59 -0.53 -1.26 16 15 C 0.01 0.32 4.17 -29.04 -0.12 0.20 16 16 C -0.51 -14.25 9.65 -34.44 -0.33 -14.58 16 17 H 0.07 2.23 7.98 -52.49 -0.42 1.82 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 20 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 24 C -0.11 -1.86 9.69 -39.61 -0.38 -2.25 16 25 C -0.14 -2.04 9.96 -39.39 -0.39 -2.43 16 26 C 0.51 4.46 7.46 -10.98 -0.08 4.38 16 27 N -0.85 -3.87 8.74 31.22 0.27 -3.60 16 28 O -0.53 -6.90 17.16 5.56 0.10 -6.80 16 29 H 0.09 0.77 8.12 -51.93 -0.42 0.34 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.82 8.60 -40.82 -0.35 2.47 16 33 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.12 0.21 7.43 -51.93 -0.39 -0.18 16 35 H 0.41 2.30 8.82 -40.82 -0.36 1.94 16 36 H 0.12 2.05 6.43 -52.48 -0.34 1.71 16 37 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 39 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 43 H 0.40 0.67 8.19 -40.82 -0.33 0.34 16 44 H 0.40 1.52 8.93 -40.82 -0.36 1.15 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -39.80 379.15 -6.99 -46.79 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.82 Total: 4.33 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.26 Total: -7.61 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.79 Total: -43.14 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.26 Total: -22.51 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.80 -6.99 -46.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419808795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.263 kcal (2) G-P(sol) polarization free energy of solvation -39.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds