Wall clock time and date at job start Tue Mar 31 2020 19:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99733 * 2 1 4 4 N 1.34777 * 119.99889 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99822 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47569 * 35.00055 * 5 4 2 7 7 C 1.52995 * 109.47115 * 155.00140 * 5 4 2 8 8 C 1.50697 * 109.47291 * 294.99921 * 7 5 4 9 9 O 1.21286 * 119.99874 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00205 * 180.02562 * 8 7 5 11 11 C 1.39924 * 119.99986 * 174.72880 * 10 8 7 12 12 C 1.38876 * 120.06988 * 326.54968 * 11 10 8 13 13 C 1.38112 * 119.92915 * 179.76834 * 12 11 10 14 14 C 1.38284 * 120.07079 * 0.48327 * 13 12 11 15 15 C 1.50698 * 119.93172 * 179.74473 * 14 13 12 16 16 C 1.50699 * 109.47114 * 270.02653 * 15 14 13 17 17 H 1.07994 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99964 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00183 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99887 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47222 * 89.99670 * 20 18 16 22 22 H 1.48502 * 109.46706 * 209.99638 * 20 18 16 23 23 H 1.48496 * 109.46825 * 329.99623 * 20 18 16 24 24 C 1.38284 * 120.14090 * 359.77324 * 14 13 12 25 25 C 1.38114 * 120.06908 * 359.97438 * 24 14 13 26 26 C 1.50702 * 109.46783 * 274.99916 * 5 4 2 27 27 N 1.34781 * 119.99845 * 180.02562 * 26 5 4 28 28 O 1.21280 * 120.00277 * 359.97438 * 26 5 4 29 29 H 1.09004 * 109.47331 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46954 * 120.00228 * 1 2 3 31 31 H 1.08999 * 109.47793 * 240.00183 * 1 2 3 32 32 H 0.97004 * 120.00040 * 0.02562 * 4 2 1 33 33 H 1.09000 * 109.47398 * 54.99691 * 7 5 4 34 34 H 1.09004 * 109.47253 * 174.99573 * 7 5 4 35 35 H 0.96997 * 120.00157 * 354.72833 * 10 8 7 36 36 H 1.08003 * 120.03544 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.96829 * 180.21788 * 13 12 11 38 38 H 1.09001 * 109.47105 * 30.02676 * 15 14 13 39 39 H 1.08998 * 109.47342 * 150.02817 * 15 14 13 40 40 H 0.96998 * 120.00221 * 180.02562 * 19 18 16 41 41 H 1.07996 * 119.96790 * 179.97438 * 24 14 13 42 42 H 1.08003 * 120.03540 * 179.97438 * 25 24 14 43 43 H 0.97006 * 119.99602 * 359.97438 * 27 26 5 44 44 H 0.96991 * 120.00048 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3253 0.5905 7 6 4.1556 -2.4744 0.6112 8 6 3.7564 -2.5405 2.0628 9 8 3.1266 -1.6314 2.5605 10 7 4.1002 -3.6095 2.8082 11 6 3.8269 -3.6226 4.1804 12 6 3.8737 -2.4422 4.9105 13 6 3.5987 -2.4576 6.2639 14 6 3.2869 -3.6484 6.8941 15 6 2.9931 -3.6626 8.3720 16 6 4.2729 -3.8836 9.1365 17 1 5.2057 -4.0015 8.6053 18 6 4.2530 -3.9341 10.5143 19 7 5.3697 -4.1275 11.1814 20 14 2.6394 -3.7294 11.4332 21 1 2.0057 -5.0588 11.6228 22 1 2.8995 -3.1114 12.7582 23 1 1.7307 -2.8552 10.6489 24 6 3.2447 -4.8264 6.1709 25 6 3.5135 -4.8168 4.8163 26 6 4.1487 -1.0437 -1.4142 27 7 5.4739 -1.0228 -1.6591 28 8 3.3609 -0.9640 -2.3329 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3634 -0.5138 0.8899 32 1 1.6958 -2.0073 0.0005 33 1 3.7212 -3.3188 0.0761 34 1 5.2420 -2.5135 0.5309 35 1 4.5370 -4.3698 2.3934 36 1 4.1215 -1.5125 4.4199 37 1 3.6315 -1.5395 6.8316 38 1 2.5553 -2.7082 8.6646 39 1 2.2928 -4.4673 8.5956 40 1 5.3556 -4.1634 12.1506 41 1 3.0013 -5.7548 6.6660 42 1 3.4808 -5.7372 4.2521 43 1 6.1039 -1.0869 -0.9243 44 1 5.7975 -0.9429 -2.5700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419808795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:41 Heat of formation + Delta-G solvation = -122.526512 kcal Electronic energy + Delta-G solvation = -27675.765185 eV Core-core repulsion = 23591.309781 eV Total energy + Delta-G solvation = -4084.455404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.87853 -41.02327 -39.79639 -39.53530 -36.45442 -35.89894 -34.92906 -34.78000 -32.92634 -32.20952 -31.75625 -30.19951 -28.73905 -26.47322 -24.59110 -23.82565 -22.37436 -21.93020 -21.36450 -21.18557 -19.13745 -18.95868 -18.62595 -18.27982 -17.85058 -17.46143 -16.86388 -16.75255 -16.38276 -16.00192 -15.91619 -15.85581 -15.51664 -15.08705 -14.84288 -14.62643 -14.53412 -14.29364 -14.21856 -13.95294 -13.65219 -13.46337 -13.27287 -13.10211 -13.05261 -12.69293 -12.52726 -12.14768 -11.94608 -11.74322 -11.60874 -11.48849 -11.11201 -11.01062 -10.81813 -10.77590 -10.68145 -10.12750 -9.74612 -8.80359 -8.29239 -6.33779 0.44402 0.58865 1.36351 1.38914 1.45171 1.50507 1.60778 1.64262 2.02777 2.11197 2.35748 2.69389 2.99993 3.05074 3.36703 3.64047 3.93032 4.02732 4.04934 4.15120 4.17023 4.33255 4.40069 4.48894 4.60730 4.61833 4.64318 4.66520 4.77514 5.02962 5.05872 5.08677 5.28642 5.32458 5.41835 5.45585 5.57379 5.64645 5.86149 6.02961 6.17776 6.30053 6.37079 6.46870 6.52440 6.72367 7.19962 7.22748 7.27984 7.29642 8.87006 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002224 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.171014 B =12589.166328 C =13232.963731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.600 6.600 4 N -0.694 5.694 5 C 0.141 3.859 6 H 0.102 0.898 7 C -0.130 4.130 8 C 0.508 3.492 9 O -0.550 6.550 10 N -0.652 5.652 11 C 0.125 3.875 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.075 4.075 15 C 0.020 3.980 16 C -0.517 4.517 17 H 0.030 0.970 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.949 3.051 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.250 1.250 24 C -0.114 4.114 25 C -0.129 4.129 26 C 0.510 3.490 27 N -0.830 5.830 28 O -0.577 6.577 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.416 0.584 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.430 0.570 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.129 0.871 42 H 0.161 0.839 43 H 0.419 0.581 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 -1.972 -28.585 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.301 3.699 3 O -0.482 6.482 4 N -0.345 5.345 5 C 0.031 3.969 6 H 0.120 0.880 7 C -0.170 4.170 8 C 0.296 3.704 9 O -0.427 6.427 10 N -0.299 5.299 11 C 0.031 3.969 12 C -0.145 4.145 13 C -0.141 4.141 14 C -0.075 4.075 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.048 0.952 18 C -0.190 4.190 19 N -0.589 5.589 20 Si 0.772 3.228 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.174 1.174 24 C -0.133 4.133 25 C -0.149 4.149 26 C 0.293 3.707 27 N -0.396 5.396 28 O -0.455 6.455 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.270 0.730 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.179 0.821 43 H 0.250 0.750 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.973 -0.556 -28.585 28.866 hybrid contribution 0.312 -0.248 0.982 1.060 sum -3.661 -0.804 -27.603 27.857 Atomic orbital electron populations 1.21894 0.88753 1.05864 1.06041 1.21421 0.92258 0.82964 0.73245 1.90665 1.72094 1.33299 1.52100 1.45426 1.05376 1.09329 1.74394 1.20545 0.82812 1.00975 0.92617 0.88022 1.21992 1.06816 0.97961 0.90233 1.21112 0.78507 0.81406 0.89381 1.90829 1.39298 1.38383 1.74167 1.43272 1.60070 1.21334 1.05225 1.17545 1.01448 0.93877 0.83984 1.20988 1.02079 0.98378 0.93084 1.20949 1.00787 0.97797 0.94592 1.20147 0.97691 0.93868 0.95842 1.18648 0.95808 0.97256 0.90012 1.21162 0.93664 1.49146 0.91489 0.95160 1.25966 1.00227 0.94170 0.98594 1.70050 1.29166 1.51628 1.08049 0.85680 0.79724 0.79683 0.77744 1.18634 1.21002 1.17363 1.21038 1.00495 0.97497 0.94227 1.21069 1.01680 0.97780 0.94349 1.21077 0.83553 0.74968 0.91150 1.43685 1.06114 1.75605 1.14164 1.90736 1.56808 1.50918 1.47086 0.89548 0.87050 0.87704 0.74714 0.83747 0.82503 0.73017 0.85923 0.87352 0.95837 0.94924 0.92393 0.85333 0.82119 0.74957 0.75717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.32 71.24 0.74 -1.84 16 2 C 0.51 12.34 7.77 87.66 0.68 13.02 16 3 O -0.60 -20.36 16.75 -3.02 -0.05 -20.41 16 4 N -0.69 -12.17 3.75 -446.11 -1.67 -13.84 16 5 C 0.14 2.07 1.94 44.24 0.09 2.16 16 6 H 0.10 2.06 7.39 -2.39 -0.02 2.04 16 7 C -0.13 -0.72 5.19 29.85 0.15 -0.57 16 8 C 0.51 7.85 7.43 87.66 0.65 8.50 16 9 O -0.55 -14.45 13.05 -3.05 -0.04 -14.49 16 10 N -0.65 -9.46 5.34 -303.50 -1.62 -11.08 16 11 C 0.13 3.22 6.28 38.15 0.24 3.46 16 12 C -0.13 -4.14 8.66 22.39 0.19 -3.95 16 13 C -0.12 -4.81 9.69 22.25 0.22 -4.59 16 14 C -0.07 -3.10 5.07 -19.84 -0.10 -3.20 16 15 C 0.02 0.95 4.17 29.10 0.12 1.07 16 16 C -0.52 -29.81 9.65 25.60 0.25 -29.57 16 17 H 0.03 1.94 7.98 -2.91 -0.02 1.92 16 18 C 0.01 0.43 5.47 84.66 0.46 0.90 16 19 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 20 Si 0.95 43.92 27.47 68.60 1.88 45.81 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 24 C -0.11 -3.88 9.69 22.25 0.22 -3.67 16 25 C -0.13 -3.29 9.96 22.39 0.22 -3.06 16 26 C 0.51 7.95 7.46 87.66 0.65 8.60 16 27 N -0.83 -5.19 8.74 -173.53 -1.52 -6.71 16 28 O -0.58 -14.43 17.16 -3.03 -0.05 -14.48 16 29 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 30 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.42 4.83 8.60 -92.70 -0.80 4.03 16 33 H 0.14 -0.08 8.14 -2.39 -0.02 -0.09 16 34 H 0.16 -0.35 7.43 -2.38 -0.02 -0.37 16 35 H 0.43 2.34 8.82 -92.71 -0.82 1.53 16 36 H 0.12 4.07 6.43 -2.91 -0.02 4.05 16 37 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.02 1.12 7.14 -2.39 -0.02 1.10 16 39 H 0.03 1.47 7.51 -2.39 -0.02 1.45 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 42 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.42 -0.11 8.19 -92.70 -0.76 -0.87 16 44 H 0.41 2.00 8.93 -92.71 -0.83 1.17 16 Total: -1.00 -94.29 379.15 -0.16 -94.45 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -2.17 Total: 12.37 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.78 Total: -12.74 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -4.51 Total: -90.51 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.14 Total: -49.38 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.81 kcal Total: -94.29 -0.16 -94.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419808795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.079 kcal (2) G-P(sol) polarization free energy of solvation -94.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds