Wall clock time and date at job start Tue Mar 31 2020 18:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.53001 * 109.47477 * 270.27752 * 8 7 6 10 10 N 1.46496 * 109.47243 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00231 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00280 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00167 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46994 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00398 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99394 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99692 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00259 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99764 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46816 * 60.00073 * 22 20 18 24 24 H 1.48499 * 109.47154 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47214 * 300.00143 * 22 20 18 26 26 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 27 27 C 1.37892 * 120.16928 * 359.71584 * 26 7 6 28 28 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46978 * 299.99439 * 1 2 3 30 30 H 1.08999 * 109.47274 * 59.99793 * 1 2 3 31 31 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 33 33 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 34 34 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 35 35 H 1.08997 * 109.47242 * 300.00089 * 9 8 7 36 36 H 1.09003 * 109.46379 * 60.00082 * 9 8 7 37 37 H 0.97008 * 119.99870 * 0.02562 * 10 9 8 38 38 H 0.96999 * 120.00110 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.46934 * 300.00317 * 14 13 11 40 40 H 1.08999 * 109.46694 * 59.99783 * 14 13 11 41 41 H 0.96997 * 120.00499 * 0.02562 * 17 15 14 42 42 H 0.96998 * 120.00001 * 180.02562 * 21 20 18 43 43 H 1.08000 * 119.91724 * 179.74709 * 26 7 6 44 44 H 1.08001 * 120.08323 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6369 -5.4188 -1.4463 10 7 5.3700 -6.6872 -1.4473 11 6 5.7078 -7.2694 -2.6149 12 8 5.4038 -6.7421 -3.6675 13 7 6.3817 -8.4365 -2.6159 14 6 6.7485 -9.0696 -3.8851 15 6 7.4898 -10.3527 -3.6106 16 8 7.6915 -10.7040 -2.4674 17 7 7.9286 -11.1098 -4.6357 18 6 8.6035 -12.2768 -4.3861 19 1 8.7831 -12.5896 -3.3681 20 6 9.0564 -13.0571 -5.4428 21 7 8.8374 -12.6767 -6.6815 22 14 9.9753 -14.6475 -5.1027 23 1 9.1043 -15.5659 -4.3261 24 1 10.3476 -15.2889 -6.3893 25 1 11.2037 -14.3523 -4.3225 26 6 2.2439 -3.6777 -0.0029 27 6 1.5473 -2.4877 -0.0019 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 4.1856 -0.3457 0.0012 32 1 5.4036 -2.4818 -0.0110 33 1 5.3337 -4.8486 0.5109 34 1 3.7922 -5.7387 0.5095 35 1 3.6847 -5.5486 -1.9606 36 1 5.2262 -4.6586 -1.9591 37 1 5.6122 -7.1080 -0.6075 38 1 6.6239 -8.8574 -1.7762 39 1 5.8463 -9.2860 -4.4572 40 1 7.3877 -8.3960 -4.4557 41 1 7.7676 -10.8287 -5.5500 42 1 9.1533 -13.2216 -7.4192 43 1 1.7082 -4.6154 -0.0035 44 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478602701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:47 Heat of formation + Delta-G solvation = -86.687592 kcal Electronic energy + Delta-G solvation = -25963.056793 eV Core-core repulsion = 21880.155481 eV Total energy + Delta-G solvation = -4082.901312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52915 -39.86768 -38.85879 -38.20336 -35.69048 -34.40544 -33.66631 -33.17751 -31.79745 -31.37978 -30.57828 -28.83160 -27.26463 -24.81183 -24.00849 -23.06717 -22.13385 -20.78410 -20.18535 -19.59739 -18.45447 -17.97054 -17.46110 -16.40897 -16.37086 -15.69987 -15.65962 -15.54838 -15.43637 -14.94950 -14.74192 -14.54147 -14.35814 -14.25324 -14.04930 -14.03123 -13.55295 -13.45660 -13.24909 -12.66156 -12.63720 -12.18969 -12.10064 -12.07198 -12.04240 -11.73476 -11.63339 -11.33825 -11.10794 -10.51308 -10.32286 -10.20992 -10.07965 -9.63092 -9.46562 -9.24494 -9.20920 -8.63253 -8.62905 -8.10433 -6.51676 -3.93882 0.16405 0.92049 1.92571 2.76901 3.13249 3.21231 3.24979 3.31679 3.37605 3.57550 3.74717 4.07277 4.22081 4.23116 4.43910 4.50586 4.58255 4.66453 4.70078 4.85255 4.89733 4.91159 4.98962 5.03605 5.16451 5.16951 5.36678 5.45239 5.51582 5.61063 5.70423 5.80074 5.91588 5.93313 6.00009 6.07666 6.09178 6.39401 6.44470 6.73436 7.05031 7.05615 7.45334 7.91730 8.20588 8.44767 8.76665 9.04120 9.39065 9.86951 10.65096 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.045139 B = 0.001395 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.160158 B =20070.506943 C =20219.137355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.396 3.604 3 O -0.462 6.462 4 C -0.178 4.178 5 C -0.058 4.058 6 C -0.125 4.125 7 C -0.044 4.044 8 C -0.099 4.099 9 C 0.147 3.853 10 N -0.751 5.751 11 C 0.704 3.296 12 O -0.597 6.597 13 N -0.724 5.724 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.599 6.599 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.027 3.973 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.127 4.127 27 C -0.072 4.072 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.132 0.868 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 20.390 14.062 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.274 3.726 3 O -0.338 6.338 4 C -0.179 4.179 5 C -0.076 4.076 6 C -0.143 4.143 7 C -0.045 4.045 8 C -0.137 4.137 9 C 0.022 3.978 10 N -0.408 5.408 11 C 0.404 3.596 12 O -0.476 6.476 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.176 4.176 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.145 4.145 27 C -0.090 4.090 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.244 0.756 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.150 0.850 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.192 21.069 13.613 29.326 hybrid contribution 0.556 -1.146 0.247 1.298 sum -14.636 19.923 13.860 28.342 Atomic orbital electron populations 1.22250 0.93749 1.04920 1.05050 1.22532 0.91723 0.87627 0.70690 1.90547 1.72118 1.34414 1.36684 1.20538 0.94682 0.94814 1.07896 1.21425 0.93164 0.98747 0.94292 1.21113 1.00530 0.91524 1.01178 1.19982 0.93830 0.94698 0.95959 1.20906 1.01080 0.94412 0.97286 1.21061 0.96800 0.84774 0.95138 1.45020 1.62835 1.25469 1.07462 1.15838 0.78961 0.80827 0.83988 1.90914 1.60787 1.65621 1.30272 1.44771 1.60112 1.22728 1.10536 1.20784 1.00043 0.93867 0.85301 1.19762 0.85933 0.86677 0.86250 1.90486 1.62925 1.73775 1.21352 1.41781 1.48473 1.20328 1.07742 1.19682 1.31379 0.97476 0.95054 0.87740 1.25319 0.97813 0.99920 0.94588 1.69607 1.45941 1.39508 0.98380 0.85872 0.79705 0.80843 0.77535 1.19796 1.20849 1.19790 1.21098 0.93587 0.98473 1.01296 1.21512 1.00164 0.91382 0.95901 0.89703 0.88728 0.88656 0.84871 0.85072 0.89696 0.89672 0.91400 0.91421 0.76909 0.75593 0.90010 0.90019 0.77001 0.91531 0.85034 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.81 10.19 36.00 0.37 -0.45 16 2 C 0.40 3.07 7.23 -30.69 -0.22 2.85 16 3 O -0.46 -5.23 17.09 5.57 0.10 -5.13 16 4 C -0.18 -1.34 5.87 -105.06 -0.62 -1.96 16 5 C -0.06 -0.47 9.60 -39.11 -0.38 -0.84 16 6 C -0.13 -0.90 9.68 -39.65 -0.38 -1.28 16 7 C -0.04 -0.30 5.14 -104.50 -0.54 -0.83 16 8 C -0.10 -0.59 5.45 -27.88 -0.15 -0.75 16 9 C 0.15 1.36 5.66 -4.04 -0.02 1.34 16 10 N -0.75 -8.23 5.56 -65.23 -0.36 -8.60 16 11 C 0.70 11.12 8.57 -86.92 -0.74 10.38 16 12 O -0.60 -11.59 16.34 5.29 0.09 -11.51 16 13 N -0.72 -11.89 5.53 -66.42 -0.37 -12.26 16 14 C 0.13 2.37 6.15 -5.19 -0.03 2.34 16 15 C 0.43 9.73 7.85 -10.98 -0.09 9.64 16 16 O -0.60 -15.10 15.24 5.55 0.08 -15.01 16 17 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 18 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.74 13.05 55.50 0.72 -23.01 16 22 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 C -0.13 -0.77 9.68 -39.64 -0.38 -1.15 16 27 C -0.07 -0.41 9.45 -39.10 -0.37 -0.78 16 28 H 0.08 0.17 5.61 -51.93 -0.29 -0.12 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 1.06 7.65 -52.49 -0.40 0.66 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.08 0.42 8.08 -51.92 -0.42 0.00 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.29 8.49 -40.82 -0.35 2.95 16 38 H 0.41 6.41 7.45 -40.82 -0.30 6.11 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.40 9.40 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.14 0.40 5.93 -52.49 -0.31 0.09 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -34.56 384.29 -8.54 -43.10 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.71 Total: 14.15 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -3.80 Total: 10.68 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.06 Total: -57.44 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: 0.27 Total: -31.65 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.56 -8.54 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478602701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.587 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds