Wall clock time and date at job start Tue Mar 31 2020 18:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.53001 * 109.47477 * 270.27752 * 8 7 6 10 10 N 1.46496 * 109.47243 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00231 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00280 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00167 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46994 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00398 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99394 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99692 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00259 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99764 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46816 * 60.00073 * 22 20 18 24 24 H 1.48499 * 109.47154 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47214 * 300.00143 * 22 20 18 26 26 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 27 27 C 1.37892 * 120.16928 * 359.71584 * 26 7 6 28 28 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46978 * 299.99439 * 1 2 3 30 30 H 1.08999 * 109.47274 * 59.99793 * 1 2 3 31 31 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 33 33 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 34 34 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 35 35 H 1.08997 * 109.47242 * 300.00089 * 9 8 7 36 36 H 1.09003 * 109.46379 * 60.00082 * 9 8 7 37 37 H 0.97008 * 119.99870 * 0.02562 * 10 9 8 38 38 H 0.96999 * 120.00110 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.46934 * 300.00317 * 14 13 11 40 40 H 1.08999 * 109.46694 * 59.99783 * 14 13 11 41 41 H 0.96997 * 120.00499 * 0.02562 * 17 15 14 42 42 H 0.96998 * 120.00001 * 180.02562 * 21 20 18 43 43 H 1.08000 * 119.91724 * 179.74709 * 26 7 6 44 44 H 1.08001 * 120.08323 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6369 -5.4188 -1.4463 10 7 5.3700 -6.6872 -1.4473 11 6 5.7078 -7.2694 -2.6149 12 8 5.4038 -6.7421 -3.6675 13 7 6.3817 -8.4365 -2.6159 14 6 6.7485 -9.0696 -3.8851 15 6 7.4898 -10.3527 -3.6106 16 8 7.6915 -10.7040 -2.4674 17 7 7.9286 -11.1098 -4.6357 18 6 8.6035 -12.2768 -4.3861 19 1 8.7831 -12.5896 -3.3681 20 6 9.0564 -13.0571 -5.4428 21 7 8.8374 -12.6767 -6.6815 22 14 9.9753 -14.6475 -5.1027 23 1 9.1043 -15.5659 -4.3261 24 1 10.3476 -15.2889 -6.3893 25 1 11.2037 -14.3523 -4.3225 26 6 2.2439 -3.6777 -0.0029 27 6 1.5473 -2.4877 -0.0019 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 4.1856 -0.3457 0.0012 32 1 5.4036 -2.4818 -0.0110 33 1 5.3337 -4.8486 0.5109 34 1 3.7922 -5.7387 0.5095 35 1 3.6847 -5.5486 -1.9606 36 1 5.2262 -4.6586 -1.9591 37 1 5.6122 -7.1080 -0.6075 38 1 6.6239 -8.8574 -1.7762 39 1 5.8463 -9.2860 -4.4572 40 1 7.3877 -8.3960 -4.4557 41 1 7.7676 -10.8287 -5.5500 42 1 9.1533 -13.2216 -7.4192 43 1 1.7082 -4.6154 -0.0035 44 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478602701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:46 Heat of formation + Delta-G solvation = -111.592955 kcal Electronic energy + Delta-G solvation = -25964.136771 eV Core-core repulsion = 21880.155481 eV Total energy + Delta-G solvation = -4083.981289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25011 -40.99837 -40.02594 -39.42674 -36.61547 -36.16505 -35.24874 -33.92107 -33.34346 -32.30981 -31.13344 -29.70939 -28.51862 -26.41106 -24.95707 -23.56073 -22.74091 -22.00021 -21.34359 -20.72828 -20.10235 -19.54066 -18.03220 -17.51539 -17.35973 -17.11094 -16.73833 -16.54254 -16.20841 -16.02360 -15.95916 -15.83865 -15.39182 -15.31964 -15.16133 -14.84278 -14.68873 -14.42817 -13.94181 -13.81111 -13.57761 -13.52052 -13.08420 -12.97630 -12.88659 -12.70132 -12.57979 -12.45227 -12.42875 -12.12647 -11.83678 -11.54373 -11.44426 -10.79304 -10.53612 -10.42535 -10.08585 -9.96240 -9.79494 -9.78955 -8.49196 -5.99523 -0.38615 0.42324 1.35577 1.39609 1.44050 1.54354 1.65771 1.91854 2.13431 2.30174 2.78356 3.06118 3.10549 3.18162 3.34556 3.77102 3.87863 3.98248 4.06021 4.09707 4.21453 4.23628 4.39999 4.45985 4.47651 4.50104 4.55467 4.63681 4.65286 4.87719 4.94840 5.06575 5.10595 5.12422 5.31341 5.32857 5.40111 5.43224 5.49401 5.58685 5.91374 5.93346 5.99354 6.49877 6.50737 7.05089 7.06055 7.44755 7.55457 7.96261 8.67403 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.045139 B = 0.001395 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.160158 B =20070.506943 C =20219.137355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.393 3.607 3 O -0.510 6.510 4 C -0.196 4.196 5 C -0.079 4.079 6 C -0.134 4.134 7 C -0.050 4.050 8 C -0.086 4.086 9 C 0.147 3.853 10 N -0.731 5.731 11 C 0.703 3.297 12 O -0.635 6.635 13 N -0.724 5.724 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.339 4.339 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.270 1.270 26 C -0.130 4.130 27 C -0.064 4.064 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.413 0.587 38 H 0.411 0.589 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.154 0.846 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 19.536 15.003 29.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.275 3.725 3 O -0.390 6.390 4 C -0.197 4.197 5 C -0.097 4.097 6 C -0.152 4.152 7 C -0.051 4.051 8 C -0.123 4.123 9 C 0.023 3.977 10 N -0.388 5.388 11 C 0.402 3.598 12 O -0.516 6.516 13 N -0.381 5.381 14 C 0.013 3.987 15 C 0.221 3.779 16 O -0.511 6.511 17 N -0.195 5.195 18 C -0.468 4.468 19 H 0.105 0.895 20 C -0.210 4.210 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.148 4.148 27 C -0.082 4.082 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.250 0.750 38 H 0.249 0.751 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.172 0.828 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.485 20.225 14.598 29.898 hybrid contribution 0.908 -0.826 -0.005 1.227 sum -15.576 19.399 14.594 28.843 Atomic orbital electron populations 1.22295 0.90563 1.06850 1.05758 1.23170 0.93523 0.86963 0.68808 1.90529 1.73346 1.35857 1.39257 1.20737 0.94627 0.95695 1.08627 1.21500 0.93946 0.98761 0.95538 1.21248 1.01069 0.91565 1.01311 1.20115 0.94430 0.94564 0.95941 1.20819 1.02049 0.94428 0.95045 1.21152 0.95812 0.83407 0.97340 1.44905 1.61656 1.25519 1.06693 1.15972 0.78658 0.80416 0.84703 1.90892 1.62244 1.66463 1.32045 1.44676 1.60495 1.23094 1.09875 1.20571 0.99907 0.91740 0.86492 1.20415 0.84778 0.87308 0.85428 1.90463 1.63620 1.74708 1.22340 1.41831 1.49041 1.20341 1.08259 1.19718 1.33299 0.99081 0.94709 0.89485 1.26115 0.98061 1.02654 0.94197 1.69676 1.46337 1.40607 0.98976 0.84931 0.78373 0.76956 0.77745 1.19460 1.19723 1.19509 1.21441 0.93438 0.99518 1.00375 1.21844 1.01719 0.90365 0.94277 0.87171 0.87742 0.87986 0.86100 0.84396 0.88546 0.87680 0.92085 0.92840 0.75022 0.75099 0.89075 0.89217 0.76719 0.91100 0.82828 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 10.19 71.24 0.73 -0.49 16 2 C 0.39 6.06 7.23 28.03 0.20 6.26 16 3 O -0.51 -12.23 17.09 -2.97 -0.05 -12.28 16 4 C -0.20 -2.85 5.87 -20.15 -0.12 -2.96 16 5 C -0.08 -1.32 9.60 22.58 0.22 -1.10 16 6 C -0.13 -1.87 9.68 22.23 0.22 -1.65 16 7 C -0.05 -0.58 5.14 -19.79 -0.10 -0.68 16 8 C -0.09 -0.80 5.45 29.85 0.16 -0.64 16 9 C 0.15 2.47 5.66 86.38 0.49 2.96 16 10 N -0.73 -14.59 5.56 -478.55 -2.66 -17.25 16 11 C 0.70 21.28 8.57 179.06 1.53 22.81 16 12 O -0.63 -24.16 16.34 -3.99 -0.07 -24.22 16 13 N -0.72 -22.91 5.53 -482.31 -2.67 -25.58 16 14 C 0.14 5.12 6.15 85.63 0.53 5.64 16 15 C 0.43 19.66 7.85 87.66 0.69 20.35 16 16 O -0.62 -31.41 15.24 -3.06 -0.05 -31.45 16 17 N -0.56 -27.76 5.29 -306.98 -1.62 -29.38 16 18 C -0.34 -18.46 9.68 84.04 0.81 -17.64 16 19 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 21 N -0.92 -48.32 13.05 21.66 0.28 -48.04 16 22 Si 1.00 41.26 29.55 68.60 2.03 43.28 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 C -0.13 -1.22 9.68 22.23 0.22 -1.01 16 27 C -0.06 -0.59 9.45 22.58 0.21 -0.37 16 28 H 0.11 0.07 5.61 -2.39 -0.01 0.06 16 29 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 2.19 7.65 -2.91 -0.02 2.16 16 32 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 34 H 0.10 0.62 8.08 -2.38 -0.02 0.61 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.41 5.76 8.49 -92.70 -0.79 4.97 16 38 H 0.41 12.42 7.45 -92.71 -0.69 11.73 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 42 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 43 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.17 0.36 5.93 -2.91 -0.02 0.34 16 Total: -1.00 -75.69 384.29 0.31 -75.38 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -1.14 Total: 38.10 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 6.25 Total: 31.44 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.67 Total: -120.25 kcal Atomic # 8 Polarization: -67.79 SS G_CDS: -0.16 Total: -67.95 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -75.69 0.31 -75.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478602701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.215 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds