Wall clock time and date at job start Tue Mar 31 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47141 * 2 1 4 4 C 1.36932 * 120.00561 * 275.31202 * 3 2 1 5 5 H 1.07997 * 119.99908 * 37.57387 * 4 3 2 6 6 C 1.38814 * 120.00204 * 217.58277 * 4 3 2 7 7 N 1.31627 * 119.99717 * 21.41785 * 6 4 3 8 8 Si 1.86799 * 120.00117 * 201.42225 * 6 4 3 9 9 H 1.48497 * 109.47168 * 59.99889 * 8 6 4 10 10 H 1.48504 * 109.46992 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47020 * 299.99675 * 8 6 4 12 12 C 1.46502 * 119.99346 * 95.31375 * 3 2 1 13 13 C 1.52997 * 109.47226 * 269.99416 * 12 3 2 14 14 N 1.46501 * 109.47361 * 180.02562 * 13 12 3 15 15 C 1.34783 * 119.99835 * 180.02562 * 14 13 12 16 16 O 1.21577 * 120.00379 * 359.97438 * 15 14 13 17 17 C 1.47611 * 119.99645 * 180.02562 * 15 14 13 18 18 C 1.39720 * 120.05747 * 359.97438 * 17 15 14 19 19 C 1.37843 * 120.11518 * 180.02562 * 18 17 15 20 20 C 1.38701 * 120.07233 * 359.97438 * 19 18 17 21 21 C 1.39680 * 120.09813 * 0.02562 * 20 19 18 22 22 C 1.38093 * 120.12023 * 359.97438 * 21 20 19 23 23 N 1.40268 * 119.24336 * 179.97438 * 21 20 19 24 24 C 1.35091 * 118.96651 * 15.80054 * 23 21 20 25 25 O 1.21290 * 120.13977 * 181.36527 * 24 23 21 26 26 C 1.50740 * 119.72485 * 1.16455 * 24 23 21 27 27 O 1.35842 * 120.51274 * 180.02562 * 20 19 18 28 28 H 1.09001 * 109.46968 * 59.98861 * 1 2 3 29 29 H 1.08992 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46654 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.46601 * 240.00475 * 2 1 3 32 32 H 1.08996 * 109.46816 * 120.00418 * 2 1 3 33 33 H 0.97000 * 119.99745 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47100 * 149.99947 * 12 3 2 35 35 H 1.09002 * 109.47645 * 29.99566 * 12 3 2 36 36 H 1.09000 * 109.47069 * 60.00584 * 13 12 3 37 37 H 1.09003 * 109.47646 * 300.00784 * 13 12 3 38 38 H 0.96999 * 120.00398 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.94782 * 359.97438 * 18 17 15 40 40 H 1.07995 * 119.96518 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.14388 * 180.02562 * 22 21 20 42 42 H 0.97008 * 120.51846 * 195.52275 * 23 21 20 43 43 H 1.08995 * 109.53992 * 208.86292 * 26 24 23 44 44 H 1.09001 * 109.21805 * 89.01029 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4106 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7980 -0.6488 8 14 3.0995 4.2796 -2.6583 9 1 1.9630 5.1787 -2.3342 10 1 4.3625 5.0607 -2.6667 11 1 2.8846 3.6727 -3.9965 12 6 2.3733 2.0325 1.2634 13 6 1.1427 2.7381 1.8367 14 7 1.4978 3.3900 3.0998 15 6 0.5651 4.0767 3.7891 16 8 -0.5706 4.1557 3.3626 17 6 0.9230 4.7340 5.0615 18 6 2.2280 4.6444 5.5525 19 6 2.5634 5.2573 6.7408 20 6 1.6060 5.9651 7.4522 21 6 0.2996 6.0585 6.9668 22 6 -0.0430 5.4469 5.7770 23 7 -0.6544 6.7784 7.7010 24 6 -0.2347 7.6216 8.6694 25 8 -1.0422 8.2360 9.3340 26 6 1.2412 7.7924 8.9237 27 8 1.9269 6.5730 8.6239 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.0490 3.4031 -0.7828 34 1 3.1617 2.7639 1.0861 35 1 2.7255 1.2831 1.9722 36 1 0.3542 2.0068 2.0140 37 1 0.7904 3.4876 1.1279 38 1 2.4038 3.3267 3.4403 39 1 2.9751 4.0935 5.0006 40 1 3.5727 5.1862 7.1183 41 1 -1.0529 5.5191 5.4012 42 1 -1.6006 6.6754 7.5136 43 1 1.4033 8.0513 9.9700 44 1 1.6247 8.5910 8.2887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663393200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:08 Heat of formation + Delta-G solvation = -54.843171 kcal Electronic energy + Delta-G solvation = -27804.463812 eV Core-core repulsion = 23722.943378 eV Total energy + Delta-G solvation = -4081.520434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.86620 -39.87772 -38.93486 -37.56259 -36.33750 -35.55647 -34.21221 -31.92543 -31.28568 -30.44015 -29.57600 -28.43360 -27.35474 -24.77908 -24.11917 -23.24436 -22.09467 -21.21534 -20.38574 -19.65585 -19.35987 -18.42543 -17.54694 -16.92311 -16.55954 -16.53203 -15.74611 -15.45697 -15.24217 -15.00841 -14.81158 -14.63391 -14.27272 -14.02278 -13.97227 -13.64420 -13.49587 -13.21083 -13.10141 -12.70064 -12.42091 -12.12457 -11.78632 -11.64803 -11.54840 -11.19471 -11.14290 -10.78501 -10.68892 -10.57466 -10.56595 -10.13916 -9.94157 -9.93665 -9.67453 -9.12158 -8.67415 -8.52744 -8.37015 -6.67029 -5.88188 -3.46726 0.39664 0.76219 1.77438 2.26923 2.69337 2.86489 3.31408 3.37495 3.38823 3.43087 3.51683 3.64441 4.18280 4.41394 4.42483 4.56841 4.67457 4.76549 4.81942 4.95197 5.23677 5.32307 5.47978 5.53120 5.69353 5.92196 5.94911 5.98798 6.07653 6.11239 6.11977 6.32652 6.35078 6.38247 6.46015 6.64876 6.75932 6.79102 6.88229 6.95817 7.12993 7.30142 7.47586 7.76264 7.79712 8.41343 8.44954 9.10226 9.71982 10.29963 11.12074 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002391 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.217983 B =11710.146750 C =12206.168468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.261 4.261 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.711 5.711 15 C 0.551 3.449 16 O -0.542 6.542 17 C -0.116 4.116 18 C -0.073 4.073 19 C -0.112 4.112 20 C 0.096 3.904 21 C 0.081 3.919 22 C -0.064 4.064 23 N -0.657 5.657 24 C 0.491 3.509 25 O -0.513 6.513 26 C 0.050 3.950 27 O -0.299 6.299 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.256 0.744 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.419 0.581 43 H 0.148 0.852 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 5.787 18.170 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.009 3.991 13 C -0.029 4.029 14 N -0.362 5.362 15 C 0.337 3.663 16 O -0.421 6.421 17 C -0.120 4.120 18 C -0.093 4.093 19 C -0.131 4.131 20 C 0.049 3.951 21 C -0.014 4.014 22 C -0.085 4.085 23 N -0.305 5.305 24 C 0.278 3.722 25 O -0.388 6.388 26 C -0.028 4.028 27 O -0.213 6.213 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.258 0.742 43 H 0.165 0.835 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.652 6.227 18.392 19.598 hybrid contribution -0.295 0.829 -0.690 1.118 sum -2.948 7.056 17.703 19.284 Atomic orbital electron populations 1.22392 0.99902 0.99113 1.01402 1.20884 0.91765 0.86940 0.98934 1.43599 1.76043 1.08290 1.02049 1.18979 1.04795 1.21345 0.93987 0.92107 1.25184 0.94134 1.01195 0.98143 1.69986 1.03128 1.37320 1.42534 0.86464 0.76984 0.82294 0.81643 1.20769 1.21559 1.20612 1.21067 0.94512 0.96999 0.86506 1.22547 1.01300 0.96629 0.82404 1.46072 1.12944 1.52621 1.24514 1.18053 0.85426 0.79148 0.83695 1.90775 1.20253 1.61433 1.69680 1.19923 0.94050 1.01442 0.96603 1.21264 0.95472 0.97602 0.94932 1.20469 0.98913 0.99832 0.93839 1.18824 0.91054 0.98079 0.87113 1.17875 0.88688 1.00265 0.94609 1.20696 1.00957 0.95757 0.91115 1.43739 1.10036 1.41539 1.35191 1.21537 0.92784 0.78683 0.79183 1.90826 1.56073 1.45356 1.46503 1.23240 0.86762 0.86975 1.05816 1.86245 1.63173 1.36819 1.35092 0.93100 0.94433 0.93667 0.93548 0.94698 0.93442 0.88340 0.95216 0.92734 0.91502 0.76812 0.83914 0.83455 0.83497 0.74175 0.83488 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.21 37.16 0.38 -2.65 16 2 C 0.14 2.85 6.44 -4.04 -0.03 2.83 16 3 N -0.58 -13.59 2.43 -173.24 -0.42 -14.01 16 4 C -0.26 -6.83 9.45 -15.06 -0.14 -6.97 16 5 H 0.06 1.61 7.92 -52.49 -0.42 1.19 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -23.97 11.47 55.49 0.64 -23.33 16 8 Si 0.90 20.90 29.60 -169.99 -5.03 15.87 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.14 2.88 5.45 -4.04 -0.02 2.86 16 13 C 0.10 1.85 6.00 -4.04 -0.02 1.82 16 14 N -0.71 -10.99 5.51 -61.32 -0.34 -11.33 16 15 C 0.55 8.66 7.76 -12.43 -0.10 8.56 16 16 O -0.54 -10.54 16.34 5.30 0.09 -10.46 16 17 C -0.12 -1.38 5.88 -104.95 -0.62 -2.00 16 18 C -0.07 -0.67 9.53 -39.17 -0.37 -1.05 16 19 C -0.11 -0.92 9.98 -39.56 -0.39 -1.31 16 20 C 0.10 0.89 6.45 -38.87 -0.25 0.64 16 21 C 0.08 0.79 6.54 -83.51 -0.55 0.24 16 22 C -0.06 -0.70 9.49 -39.06 -0.37 -1.07 16 23 N -0.66 -5.90 5.47 -9.68 -0.05 -5.95 16 24 C 0.49 4.64 7.94 -10.82 -0.09 4.55 16 25 O -0.51 -6.38 17.95 5.55 0.10 -6.28 16 26 C 0.05 0.33 7.16 36.03 0.26 0.59 16 27 O -0.30 -2.52 10.45 -19.25 -0.20 -2.72 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.82 6.64 -51.92 -0.34 0.47 16 31 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.10 2.33 5.52 -51.93 -0.29 2.04 16 35 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 36 H 0.05 1.07 6.64 -51.93 -0.34 0.73 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.40 4.98 6.49 -40.82 -0.26 4.72 16 39 H 0.14 1.05 6.38 -52.49 -0.34 0.71 16 40 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.15 1.60 7.65 -52.49 -0.40 1.20 16 42 H 0.42 3.22 8.89 -40.82 -0.36 2.86 16 43 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.54 370.74 -7.70 -40.24 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.66 Total: 5.07 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.40 Total: 7.32 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.18 Total: -54.63 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.01 Total: -19.46 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.54 -7.70 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663393200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.606 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds