Wall clock time and date at job start Tue Mar 31 2020 18:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47141 * 2 1 4 4 C 1.36932 * 120.00561 * 275.31202 * 3 2 1 5 5 H 1.07997 * 119.99908 * 37.57387 * 4 3 2 6 6 C 1.38814 * 120.00204 * 217.58277 * 4 3 2 7 7 N 1.31627 * 119.99717 * 21.41785 * 6 4 3 8 8 Si 1.86799 * 120.00117 * 201.42225 * 6 4 3 9 9 H 1.48497 * 109.47168 * 59.99889 * 8 6 4 10 10 H 1.48504 * 109.46992 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47020 * 299.99675 * 8 6 4 12 12 C 1.46502 * 119.99346 * 95.31375 * 3 2 1 13 13 C 1.52997 * 109.47226 * 269.99416 * 12 3 2 14 14 N 1.46501 * 109.47361 * 180.02562 * 13 12 3 15 15 C 1.34783 * 119.99835 * 180.02562 * 14 13 12 16 16 O 1.21577 * 120.00379 * 359.97438 * 15 14 13 17 17 C 1.47611 * 119.99645 * 180.02562 * 15 14 13 18 18 C 1.39720 * 120.05747 * 359.97438 * 17 15 14 19 19 C 1.37843 * 120.11518 * 180.02562 * 18 17 15 20 20 C 1.38701 * 120.07233 * 359.97438 * 19 18 17 21 21 C 1.39680 * 120.09813 * 0.02562 * 20 19 18 22 22 C 1.38093 * 120.12023 * 359.97438 * 21 20 19 23 23 N 1.40268 * 119.24336 * 179.97438 * 21 20 19 24 24 C 1.35091 * 118.96651 * 15.80054 * 23 21 20 25 25 O 1.21290 * 120.13977 * 181.36527 * 24 23 21 26 26 C 1.50740 * 119.72485 * 1.16455 * 24 23 21 27 27 O 1.35842 * 120.51274 * 180.02562 * 20 19 18 28 28 H 1.09001 * 109.46968 * 59.98861 * 1 2 3 29 29 H 1.08992 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46654 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.46601 * 240.00475 * 2 1 3 32 32 H 1.08996 * 109.46816 * 120.00418 * 2 1 3 33 33 H 0.97000 * 119.99745 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47100 * 149.99947 * 12 3 2 35 35 H 1.09002 * 109.47645 * 29.99566 * 12 3 2 36 36 H 1.09000 * 109.47069 * 60.00584 * 13 12 3 37 37 H 1.09003 * 109.47646 * 300.00784 * 13 12 3 38 38 H 0.96999 * 120.00398 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.94782 * 359.97438 * 18 17 15 40 40 H 1.07995 * 119.96518 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.14388 * 180.02562 * 22 21 20 42 42 H 0.97008 * 120.51846 * 195.52275 * 23 21 20 43 43 H 1.08995 * 109.53992 * 208.86292 * 26 24 23 44 44 H 1.09001 * 109.21805 * 89.01029 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4106 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7980 -0.6488 8 14 3.0995 4.2796 -2.6583 9 1 1.9630 5.1787 -2.3342 10 1 4.3625 5.0607 -2.6667 11 1 2.8846 3.6727 -3.9965 12 6 2.3733 2.0325 1.2634 13 6 1.1427 2.7381 1.8367 14 7 1.4978 3.3900 3.0998 15 6 0.5651 4.0767 3.7891 16 8 -0.5706 4.1557 3.3626 17 6 0.9230 4.7340 5.0615 18 6 2.2280 4.6444 5.5525 19 6 2.5634 5.2573 6.7408 20 6 1.6060 5.9651 7.4522 21 6 0.2996 6.0585 6.9668 22 6 -0.0430 5.4469 5.7770 23 7 -0.6544 6.7784 7.7010 24 6 -0.2347 7.6216 8.6694 25 8 -1.0422 8.2360 9.3340 26 6 1.2412 7.7924 8.9237 27 8 1.9269 6.5730 8.6239 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.0490 3.4031 -0.7828 34 1 3.1617 2.7639 1.0861 35 1 2.7255 1.2831 1.9722 36 1 0.3542 2.0068 2.0140 37 1 0.7904 3.4876 1.1279 38 1 2.4038 3.3267 3.4403 39 1 2.9751 4.0935 5.0006 40 1 3.5727 5.1862 7.1183 41 1 -1.0529 5.5191 5.4012 42 1 -1.6006 6.6754 7.5136 43 1 1.4033 8.0513 9.9700 44 1 1.6247 8.5910 8.2887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663393200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:06 Heat of formation + Delta-G solvation = -77.758093 kcal Electronic energy + Delta-G solvation = -27805.457477 eV Core-core repulsion = 23722.943378 eV Total energy + Delta-G solvation = -4082.514100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.58936 -40.99477 -39.81439 -38.44073 -37.98724 -36.35880 -35.65455 -33.81084 -32.19034 -31.43736 -30.82931 -29.49592 -28.64390 -26.25790 -25.31637 -24.12028 -23.36809 -22.41811 -22.07605 -20.64162 -20.10786 -19.31486 -18.57684 -18.20074 -17.71803 -17.35208 -17.00649 -16.88306 -16.38908 -16.16295 -15.81686 -15.65410 -15.52904 -15.37818 -15.09133 -14.91534 -14.50446 -14.18031 -14.13015 -14.04538 -13.89110 -13.68258 -13.22306 -12.99447 -12.60577 -12.49741 -12.40511 -12.35365 -12.26228 -12.01746 -11.97244 -11.66363 -11.49768 -11.35124 -11.07990 -10.52413 -10.10672 -9.83237 -9.16065 -8.57343 -7.84237 -5.46502 -0.42836 0.00259 1.05215 1.46093 1.49559 1.55505 1.57191 1.76663 2.07437 2.22273 2.52190 2.68314 2.83932 3.23296 3.45431 3.59667 3.84710 3.96011 4.02852 4.04596 4.05927 4.31431 4.34538 4.46038 4.49829 4.63419 4.74474 4.81965 4.84664 4.86781 4.93535 5.10782 5.16343 5.24320 5.30592 5.31194 5.35700 5.42323 5.58237 5.63077 5.68713 5.77302 6.09549 6.46817 6.57164 6.59042 7.15820 7.21335 7.85015 8.36973 9.11633 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002391 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.217983 B =11710.146750 C =12206.168468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.271 4.271 5 H 0.050 0.950 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.144 3.856 13 C 0.119 3.881 14 N -0.704 5.704 15 C 0.551 3.449 16 O -0.588 6.588 17 C -0.136 4.136 18 C -0.061 4.061 19 C -0.103 4.103 20 C 0.102 3.898 21 C 0.078 3.922 22 C -0.068 4.068 23 N -0.657 5.657 24 C 0.489 3.511 25 O -0.548 6.548 26 C 0.051 3.949 27 O -0.299 6.299 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.413 0.587 39 H 0.163 0.837 40 H 0.179 0.821 41 H 0.138 0.862 42 H 0.421 0.579 43 H 0.173 0.827 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 5.980 19.889 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.402 4.402 5 H 0.068 0.932 6 C -0.224 4.224 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.017 3.983 13 C -0.008 4.008 14 N -0.355 5.355 15 C 0.340 3.660 16 O -0.470 6.470 17 C -0.140 4.140 18 C -0.080 4.080 19 C -0.121 4.121 20 C 0.054 3.946 21 C -0.017 4.017 22 C -0.090 4.090 23 N -0.304 5.304 24 C 0.277 3.723 25 O -0.426 6.426 26 C -0.026 4.026 27 O -0.213 6.213 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.251 0.749 39 H 0.181 0.819 40 H 0.196 0.804 41 H 0.156 0.844 42 H 0.261 0.739 43 H 0.190 0.810 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.275 6.400 20.127 21.158 hybrid contribution -0.733 0.753 -1.140 1.550 sum -2.007 7.153 18.986 20.388 Atomic orbital electron populations 1.22227 0.98111 1.00811 1.00368 1.21010 0.93070 0.85468 0.99334 1.43843 1.76381 1.09611 1.02029 1.19101 1.04393 1.21879 0.94801 0.93240 1.25718 0.94033 1.02723 0.99972 1.70065 1.03430 1.37887 1.43726 0.85648 0.76578 0.80084 0.79958 1.21329 1.21274 1.20270 1.20956 0.94303 0.96900 0.86189 1.21986 1.00157 0.95399 0.83220 1.45847 1.13938 1.52447 1.23289 1.18594 0.84555 0.78325 0.84529 1.90747 1.22127 1.63021 1.71084 1.19605 0.95742 1.03204 0.95431 1.21457 0.94402 0.96941 0.95241 1.20762 1.00004 0.98438 0.92927 1.19047 0.90787 0.97556 0.87184 1.17834 0.89229 1.00397 0.94274 1.20616 1.00572 0.96111 0.91675 1.43801 1.10299 1.41342 1.35006 1.22106 0.93930 0.77828 0.78413 1.90813 1.57278 1.46741 1.47741 1.23520 0.84350 0.86766 1.07940 1.86255 1.63059 1.37510 1.34453 0.94786 0.91317 0.93983 0.94549 0.92810 0.93596 0.90602 0.93308 0.93169 0.95129 0.74920 0.81942 0.80400 0.84431 0.73945 0.80961 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 10.21 71.98 0.73 -4.72 16 2 C 0.14 5.43 6.44 86.38 0.56 5.98 16 3 N -0.60 -28.11 2.43 -702.02 -1.71 -29.82 16 4 C -0.27 -14.36 9.45 84.03 0.79 -13.57 16 5 H 0.05 2.68 7.92 -2.91 -0.02 2.65 16 6 C -0.03 -1.38 4.95 84.86 0.42 -0.96 16 7 N -0.91 -49.16 11.47 21.65 0.25 -48.91 16 8 Si 0.95 43.32 29.60 68.60 2.03 45.35 16 9 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.14 6.04 5.45 86.38 0.47 6.51 16 13 C 0.12 4.62 6.00 86.38 0.52 5.14 16 14 N -0.70 -21.52 5.51 -466.19 -2.57 -24.09 16 15 C 0.55 17.42 7.76 86.72 0.67 18.10 16 16 O -0.59 -23.63 16.34 -3.96 -0.06 -23.70 16 17 C -0.14 -3.12 5.88 -20.08 -0.12 -3.24 16 18 C -0.06 -0.97 9.53 22.53 0.21 -0.75 16 19 C -0.10 -1.32 9.98 22.29 0.22 -1.10 16 20 C 0.10 1.58 6.45 22.73 0.15 1.73 16 21 C 0.08 1.41 6.54 38.10 0.25 1.66 16 22 C -0.07 -1.47 9.49 22.60 0.21 -1.26 16 23 N -0.66 -11.27 5.47 -302.76 -1.66 -12.93 16 24 C 0.49 8.54 7.94 87.62 0.70 9.24 16 25 O -0.55 -13.27 17.95 -3.06 -0.05 -13.33 16 26 C 0.05 0.52 7.16 71.25 0.51 1.03 16 27 O -0.30 -4.01 10.45 -91.78 -0.96 -4.97 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.48 6.64 -2.38 -0.02 1.47 16 31 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 32 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 33 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 34 H 0.08 3.60 5.52 -2.39 -0.01 3.59 16 35 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 36 H 0.05 1.99 6.64 -2.39 -0.02 1.98 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 9.80 6.49 -92.71 -0.60 9.20 16 39 H 0.16 1.86 6.38 -2.91 -0.02 1.84 16 40 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.14 3.15 7.65 -2.91 -0.02 3.13 16 42 H 0.42 6.51 8.89 -92.70 -0.82 5.69 16 43 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -71.47 370.74 1.21 -70.26 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.36 Total: 18.34 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 6.30 Total: 23.79 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -5.68 Total: -115.75 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.08 Total: -41.99 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.47 1.21 -70.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663393200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.501 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds