Wall clock time and date at job start Tue Mar 31 2020 18:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46847 * 2 1 4 4 C 1.36940 * 119.99723 * 275.30838 * 3 2 1 5 5 H 1.08002 * 119.99771 * 37.58561 * 4 3 2 6 6 C 1.38805 * 119.99994 * 217.57737 * 4 3 2 7 7 N 1.31618 * 120.00017 * 21.43782 * 6 4 3 8 8 Si 1.86805 * 120.00222 * 201.43730 * 6 4 3 9 9 H 1.48502 * 109.46963 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47312 * 119.99733 * 8 6 4 11 11 H 1.48501 * 109.47089 * 240.00203 * 8 6 4 12 12 C 1.46497 * 120.00064 * 95.31631 * 3 2 1 13 13 C 1.52999 * 109.46886 * 269.99942 * 12 3 2 14 14 N 1.46500 * 109.47198 * 180.02562 * 13 12 3 15 15 C 1.34771 * 120.00380 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99800 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00375 * 179.97438 * 15 14 13 18 18 N 1.46498 * 109.47225 * 179.97438 * 17 15 14 19 19 C 1.47034 * 120.99343 * 85.00450 * 18 17 15 20 20 C 1.52743 * 109.48990 * 122.54931 * 19 18 17 21 21 C 1.52694 * 110.66600 * 64.31427 * 20 19 18 22 22 C 1.53289 * 109.76833 * 289.71729 * 21 20 19 23 23 S 1.66405 * 120.99927 * 265.02244 * 18 17 15 24 24 O 1.42105 * 104.53161 * 344.37020 * 23 18 17 25 25 O 1.42097 * 104.53429 * 112.73478 * 23 18 17 26 26 H 1.09007 * 109.46712 * 299.99677 * 1 2 3 27 27 H 1.08996 * 109.47376 * 59.99666 * 1 2 3 28 28 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46524 * 240.00706 * 2 1 3 30 30 H 1.08991 * 109.47166 * 119.99911 * 2 1 3 31 31 H 0.97005 * 119.99874 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46881 * 149.99971 * 12 3 2 33 33 H 1.08996 * 109.46898 * 29.99724 * 12 3 2 34 34 H 1.08991 * 109.47625 * 59.99572 * 13 12 3 35 35 H 1.09006 * 109.46628 * 299.99602 * 13 12 3 36 36 H 0.97001 * 119.99580 * 359.97438 * 14 13 12 37 37 H 1.09002 * 109.47167 * 60.00239 * 17 15 14 38 38 H 1.09002 * 109.47211 * 300.00335 * 17 15 14 39 39 H 1.09002 * 109.46839 * 2.54535 * 19 18 17 40 40 H 1.09004 * 109.46525 * 242.55722 * 19 18 17 41 41 H 1.09001 * 109.23933 * 304.01088 * 20 19 18 42 42 H 1.08992 * 109.23987 * 184.62112 * 20 19 18 43 43 H 1.08993 * 109.42207 * 49.81177 * 21 20 19 44 44 H 1.08997 * 109.41797 * 169.63220 * 21 20 19 45 45 H 1.08997 * 109.67761 * 181.48102 * 22 21 20 46 46 H 1.08993 * 109.67786 * 302.03572 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4103 1.9278 -1.9627 6 6 3.2110 2.9290 -1.3729 7 7 4.3025 2.7981 -0.6493 8 14 3.0990 4.2797 -2.6584 9 1 1.7773 4.2136 -3.3321 10 1 3.2546 5.6024 -2.0016 11 1 4.1763 4.0966 -3.6640 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7382 1.8366 14 7 1.4977 3.3902 3.0996 15 6 0.5654 4.0777 3.7885 16 8 -0.5674 4.1570 3.3626 17 6 0.9305 4.7479 5.0879 18 7 -0.2475 5.4245 5.6362 19 6 -1.2244 4.6962 6.4590 20 6 -1.3520 5.3767 7.8205 21 6 -1.9225 6.7848 7.6678 22 6 -0.8836 7.6959 7.0042 23 16 -0.5203 7.0403 5.3462 24 8 0.7254 7.5326 4.8717 25 8 -1.6821 7.0646 4.5284 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.0490 3.4028 -0.7838 32 1 3.1617 2.7642 1.0858 33 1 2.7256 1.2834 1.9720 34 1 0.3542 2.0069 2.0139 35 1 0.7903 3.4876 1.1277 36 1 2.4038 3.3270 3.4400 37 1 1.7193 5.4791 4.9106 38 1 1.2825 3.9985 5.7969 39 1 -0.8889 3.6683 6.5967 40 1 -2.1933 4.6982 5.9596 41 1 -0.3682 5.4363 8.2859 42 1 -2.0139 4.7880 8.4556 43 1 -2.8194 6.7475 7.0497 44 1 -2.1770 7.1813 8.6507 45 1 -1.2824 8.7068 6.9198 46 1 0.0280 7.7090 7.6016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663403272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:20 Heat of formation + Delta-G solvation = -82.982293 kcal Electronic energy + Delta-G solvation = -27738.455460 eV Core-core repulsion = 23791.158773 eV Total energy + Delta-G solvation = -3947.296686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.39972 -37.75535 -37.08067 -36.26701 -35.98818 -34.32983 -33.94502 -31.85903 -30.20864 -29.46116 -28.00288 -26.56499 -24.62037 -24.03406 -21.81212 -21.66236 -20.44771 -20.10428 -18.89139 -17.62251 -17.21439 -17.03202 -16.40233 -16.03141 -15.65563 -15.16350 -15.10768 -14.78133 -14.41084 -14.29906 -14.17017 -13.87911 -13.61069 -13.35580 -13.00117 -12.67790 -12.43215 -12.36483 -12.25208 -12.13705 -12.03446 -12.01703 -11.73871 -11.48998 -11.41958 -11.25833 -11.09002 -10.74595 -10.68627 -10.61253 -10.45624 -10.07609 -9.99639 -9.82992 -9.73640 -8.92701 -8.53500 -8.40425 -6.60037 -5.80974 -3.39595 0.02894 2.33069 2.97342 3.38002 3.47741 3.50651 3.52406 3.69380 3.87189 4.01702 4.27987 4.40093 4.50110 4.63726 4.74495 4.88576 5.00207 5.10551 5.24469 5.26287 5.31726 5.35378 5.39751 5.48702 5.57265 5.73831 5.78900 6.01627 6.14060 6.19899 6.26685 6.40313 6.45630 6.53222 6.70526 6.92529 6.94117 7.06755 7.18689 7.57364 7.83566 7.96954 8.50730 8.63475 9.17421 9.79260 10.36870 11.19037 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003029 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.843847 B = 9243.090413 C =10169.478979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.142 3.858 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.478 3.522 16 O -0.530 6.530 17 C 0.106 3.894 18 N -0.977 5.977 19 C 0.117 3.883 20 C -0.156 4.156 21 C -0.110 4.110 22 C -0.620 4.620 23 S 2.599 3.401 24 O -0.957 6.957 25 O -0.936 6.936 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.254 0.746 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.131 0.869 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 5.079 22.693 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 N -0.301 5.301 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.372 5.372 15 C 0.261 3.739 16 O -0.407 6.407 17 C -0.024 4.024 18 N -0.814 5.814 19 C -0.008 4.008 20 C -0.194 4.194 21 C -0.148 4.148 22 C -0.749 4.749 23 S 2.692 3.308 24 O -0.947 6.947 25 O -0.926 6.926 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.150 0.850 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.243 5.628 21.485 23.691 hybrid contribution 0.351 0.719 0.229 0.832 sum -7.893 6.347 21.714 23.960 Atomic orbital electron populations 1.22391 0.99942 0.99019 1.01426 1.20871 0.91747 0.86997 0.98835 1.43627 1.76054 1.08288 1.02135 1.19050 1.04741 1.21217 0.93950 0.92078 1.25176 0.94171 1.01182 0.98150 1.69998 1.03172 1.37274 1.42509 0.86349 0.77756 0.82272 0.81173 1.19966 1.21282 1.21601 1.21057 0.94612 0.96911 0.86381 1.22456 1.00999 0.96514 0.82843 1.46129 1.13076 1.53327 1.24665 1.21245 0.86120 0.79826 0.86702 1.90739 1.20295 1.60146 1.69493 1.21222 0.88076 0.99113 0.93956 1.57081 1.32767 1.26814 1.64774 1.21507 0.93020 0.97380 0.88903 1.22134 1.03035 0.95957 0.98305 1.21318 0.96986 0.93710 1.02825 1.30571 1.09437 1.10696 1.24203 1.05530 0.74842 0.73743 0.76660 1.93592 1.43384 1.79110 1.78651 1.93645 1.51406 1.84859 1.62693 0.93694 0.93102 0.94494 0.93602 0.94778 0.93572 0.88375 0.95341 0.93037 0.91820 0.76934 0.86176 0.87418 0.89104 0.90159 0.90365 0.88999 0.89800 0.89603 0.85040 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.21 37.16 0.38 -2.79 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.28 2.43 -173.24 -0.42 -14.70 16 4 C -0.26 -7.10 9.45 -15.06 -0.14 -7.25 16 5 H 0.06 1.69 7.92 -52.49 -0.42 1.28 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.01 11.47 55.49 0.64 -24.37 16 8 Si 0.90 21.96 29.60 -169.99 -5.03 16.92 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 13 C 0.10 2.02 6.00 -4.04 -0.02 1.99 16 14 N -0.72 -12.01 5.56 -60.30 -0.33 -12.34 16 15 C 0.48 7.99 7.90 -10.99 -0.09 7.90 16 16 O -0.53 -11.24 16.43 5.56 0.09 -11.15 16 17 C 0.11 1.20 6.13 -5.20 -0.03 1.17 16 18 N -0.98 -10.80 2.47 -115.41 -0.29 -11.09 16 19 C 0.12 0.97 6.35 -3.88 -0.02 0.94 16 20 C -0.16 -0.77 5.80 -27.02 -0.16 -0.93 16 21 C -0.11 -0.60 5.78 -26.74 -0.15 -0.76 16 22 C -0.62 -4.02 6.59 37.31 0.25 -3.77 16 23 S 2.60 31.62 5.73 -107.50 -0.62 31.00 16 24 O -0.96 -14.45 16.51 -57.50 -0.95 -15.40 16 25 O -0.94 -15.60 18.10 -57.50 -1.04 -16.64 16 26 H 0.04 0.85 6.64 -51.92 -0.34 0.51 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.10 2.47 5.52 -51.93 -0.29 2.18 16 33 H 0.03 0.58 7.86 -51.93 -0.41 0.18 16 34 H 0.05 1.08 6.64 -51.93 -0.34 0.74 16 35 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.40 5.36 8.47 -40.82 -0.35 5.02 16 37 H 0.12 1.30 6.87 -51.93 -0.36 0.94 16 38 H 0.11 0.77 8.07 -51.93 -0.42 0.36 16 39 H 0.09 0.64 7.92 -51.93 -0.41 0.23 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -37.76 382.19 -9.84 -47.61 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.52 Total: 1.57 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.13 Total: 2.82 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.41 Total: -62.50 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.90 Total: -43.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 31.62 SS G_CDS: -0.62 Total: 31.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.76 -9.84 -47.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663403272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.375 kcal (2) G-P(sol) polarization free energy of solvation -37.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds