Wall clock time and date at job start Tue Mar 31 2020 18:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46847 * 2 1 4 4 C 1.36940 * 119.99723 * 275.30838 * 3 2 1 5 5 H 1.08002 * 119.99771 * 37.58561 * 4 3 2 6 6 C 1.38805 * 119.99994 * 217.57737 * 4 3 2 7 7 N 1.31618 * 120.00017 * 21.43782 * 6 4 3 8 8 Si 1.86805 * 120.00222 * 201.43730 * 6 4 3 9 9 H 1.48502 * 109.46963 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47312 * 119.99733 * 8 6 4 11 11 H 1.48501 * 109.47089 * 240.00203 * 8 6 4 12 12 C 1.46497 * 120.00064 * 95.31631 * 3 2 1 13 13 C 1.52999 * 109.46886 * 269.99942 * 12 3 2 14 14 N 1.46500 * 109.47198 * 180.02562 * 13 12 3 15 15 C 1.34771 * 120.00380 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99800 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00375 * 179.97438 * 15 14 13 18 18 N 1.46498 * 109.47225 * 179.97438 * 17 15 14 19 19 C 1.47034 * 120.99343 * 85.00450 * 18 17 15 20 20 C 1.52743 * 109.48990 * 122.54931 * 19 18 17 21 21 C 1.52694 * 110.66600 * 64.31427 * 20 19 18 22 22 C 1.53289 * 109.76833 * 289.71729 * 21 20 19 23 23 S 1.66405 * 120.99927 * 265.02244 * 18 17 15 24 24 O 1.42105 * 104.53161 * 344.37020 * 23 18 17 25 25 O 1.42097 * 104.53429 * 112.73478 * 23 18 17 26 26 H 1.09007 * 109.46712 * 299.99677 * 1 2 3 27 27 H 1.08996 * 109.47376 * 59.99666 * 1 2 3 28 28 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46524 * 240.00706 * 2 1 3 30 30 H 1.08991 * 109.47166 * 119.99911 * 2 1 3 31 31 H 0.97005 * 119.99874 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46881 * 149.99971 * 12 3 2 33 33 H 1.08996 * 109.46898 * 29.99724 * 12 3 2 34 34 H 1.08991 * 109.47625 * 59.99572 * 13 12 3 35 35 H 1.09006 * 109.46628 * 299.99602 * 13 12 3 36 36 H 0.97001 * 119.99580 * 359.97438 * 14 13 12 37 37 H 1.09002 * 109.47167 * 60.00239 * 17 15 14 38 38 H 1.09002 * 109.47211 * 300.00335 * 17 15 14 39 39 H 1.09002 * 109.46839 * 2.54535 * 19 18 17 40 40 H 1.09004 * 109.46525 * 242.55722 * 19 18 17 41 41 H 1.09001 * 109.23933 * 304.01088 * 20 19 18 42 42 H 1.08992 * 109.23987 * 184.62112 * 20 19 18 43 43 H 1.08993 * 109.42207 * 49.81177 * 21 20 19 44 44 H 1.08997 * 109.41797 * 169.63220 * 21 20 19 45 45 H 1.08997 * 109.67761 * 181.48102 * 22 21 20 46 46 H 1.08993 * 109.67786 * 302.03572 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4103 1.9278 -1.9627 6 6 3.2110 2.9290 -1.3729 7 7 4.3025 2.7981 -0.6493 8 14 3.0990 4.2797 -2.6584 9 1 1.7773 4.2136 -3.3321 10 1 3.2546 5.6024 -2.0016 11 1 4.1763 4.0966 -3.6640 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7382 1.8366 14 7 1.4977 3.3902 3.0996 15 6 0.5654 4.0777 3.7885 16 8 -0.5674 4.1570 3.3626 17 6 0.9305 4.7479 5.0879 18 7 -0.2475 5.4245 5.6362 19 6 -1.2244 4.6962 6.4590 20 6 -1.3520 5.3767 7.8205 21 6 -1.9225 6.7848 7.6678 22 6 -0.8836 7.6959 7.0042 23 16 -0.5203 7.0403 5.3462 24 8 0.7254 7.5326 4.8717 25 8 -1.6821 7.0646 4.5284 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.0490 3.4028 -0.7838 32 1 3.1617 2.7642 1.0858 33 1 2.7256 1.2834 1.9720 34 1 0.3542 2.0069 2.0139 35 1 0.7903 3.4876 1.1277 36 1 2.4038 3.3270 3.4400 37 1 1.7193 5.4791 4.9106 38 1 1.2825 3.9985 5.7969 39 1 -0.8889 3.6683 6.5967 40 1 -2.1933 4.6982 5.9596 41 1 -0.3682 5.4363 8.2859 42 1 -2.0139 4.7880 8.4556 43 1 -2.8194 6.7475 7.0497 44 1 -2.1770 7.1813 8.6507 45 1 -1.2824 8.7068 6.9198 46 1 0.0280 7.7090 7.6016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663403272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:14 Heat of formation + Delta-G solvation = -113.020778 kcal Electronic energy + Delta-G solvation = -27739.758026 eV Core-core repulsion = 23791.158773 eV Total energy + Delta-G solvation = -3948.599253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 4.40 seconds Orbital eigenvalues (eV) -40.74540 -38.54848 -38.21533 -37.85977 -37.03319 -35.61379 -34.99534 -33.84953 -31.57178 -30.51591 -29.46100 -27.76320 -26.06852 -25.14882 -23.42739 -22.19856 -22.16058 -21.61897 -19.81228 -18.78795 -18.52400 -18.01904 -17.88110 -17.10954 -16.94045 -16.57151 -16.45591 -16.12677 -15.67608 -15.44539 -15.17658 -14.95147 -14.79651 -14.61720 -14.43872 -14.12798 -13.83870 -13.52855 -13.31963 -13.25437 -13.21866 -13.15293 -13.04703 -12.71065 -12.66924 -12.52185 -12.38133 -12.31108 -12.05624 -11.96014 -11.87301 -11.67813 -11.52976 -11.35047 -11.14997 -10.56658 -10.01776 -9.91723 -8.61498 -7.88250 -5.50617 -0.80437 1.39173 1.45000 1.48519 1.53243 1.65000 2.26367 2.48735 2.79939 3.18082 3.19931 3.44256 3.70278 3.76137 3.77967 3.92481 4.11376 4.21644 4.30734 4.38638 4.44124 4.45774 4.46494 4.57619 4.64737 4.74747 4.81030 4.83608 4.87549 4.98917 5.03854 5.06914 5.16597 5.22912 5.27547 5.36867 5.44939 5.54384 5.55196 5.65162 5.74422 6.43386 6.64516 7.13187 7.31586 7.81698 8.32706 9.07306 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003029 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.843847 B = 9243.090413 C =10169.478979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.599 5.599 4 C -0.270 4.270 5 H 0.049 0.951 6 C -0.027 4.027 7 N -0.907 5.907 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.282 1.282 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.713 5.713 15 C 0.470 3.530 16 O -0.583 6.583 17 C 0.112 3.888 18 N -0.979 5.979 19 C 0.108 3.892 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.575 4.575 23 S 2.571 3.429 24 O -1.000 7.000 25 O -1.004 7.004 26 H 0.039 0.961 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.415 0.585 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.153 0.847 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 4.947 26.532 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.400 4.400 5 H 0.067 0.933 6 C -0.226 4.226 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.200 1.200 10 H -0.219 1.219 11 H -0.209 1.209 12 C 0.019 3.981 13 C -0.008 4.008 14 N -0.366 5.366 15 C 0.255 3.745 16 O -0.462 6.462 17 C -0.017 4.017 18 N -0.816 5.816 19 C -0.016 4.016 20 C -0.185 4.185 21 C -0.156 4.156 22 C -0.710 4.710 23 S 2.672 3.328 24 O -0.990 6.990 25 O -0.994 6.994 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.252 0.748 37 H 0.145 0.855 38 H 0.179 0.821 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.171 0.829 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.045 5.463 25.296 27.101 hybrid contribution 0.223 0.729 -0.877 1.162 sum -7.823 6.192 24.419 26.378 Atomic orbital electron populations 1.22222 0.98177 1.00853 1.00195 1.21009 0.93007 0.85335 0.99428 1.43880 1.76384 1.09750 1.02019 1.19158 1.04283 1.21828 0.94767 0.93306 1.25713 0.94121 1.02710 1.00017 1.70069 1.03476 1.37849 1.43681 0.85555 0.77677 0.79823 0.79482 1.20007 1.21871 1.20860 1.20930 0.94198 0.96807 0.86189 1.21896 1.00034 0.95117 0.83778 1.45988 1.14263 1.53105 1.23270 1.22421 0.85109 0.78816 0.88109 1.90720 1.22586 1.61844 1.71089 1.21395 0.88348 1.00102 0.91876 1.57030 1.33105 1.26678 1.64804 1.21756 0.91146 0.98603 0.90132 1.22126 1.04918 0.95423 0.96072 1.21512 0.96053 0.94040 1.04035 1.30268 1.11661 1.11364 1.17707 1.06005 0.73214 0.74326 0.79297 1.93526 1.44549 1.79740 1.81210 1.93564 1.52906 1.85725 1.67175 0.94183 0.95019 0.91055 0.94440 0.92643 0.93658 0.90972 0.93082 0.93305 0.96322 0.74844 0.85493 0.82090 0.87702 0.92971 0.88031 0.86654 0.91104 0.86097 0.82880 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 10.21 71.98 0.73 -5.01 16 2 C 0.14 5.73 6.44 86.38 0.56 6.29 16 3 N -0.60 -29.87 2.43 -702.02 -1.71 -31.57 16 4 C -0.27 -15.12 9.45 84.03 0.79 -14.32 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.03 -1.54 4.95 84.86 0.42 -1.12 16 7 N -0.91 -51.88 11.47 21.65 0.25 -51.64 16 8 Si 0.95 46.19 29.60 68.60 2.03 48.22 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.15 6.59 5.45 86.38 0.47 7.06 16 13 C 0.12 5.07 6.00 86.38 0.52 5.59 16 14 N -0.71 -23.89 5.56 -463.08 -2.57 -26.47 16 15 C 0.47 15.88 7.90 87.66 0.69 16.58 16 16 O -0.58 -25.89 16.43 -3.02 -0.05 -25.94 16 17 C 0.11 2.37 6.13 85.63 0.53 2.90 16 18 N -0.98 -20.63 2.47 -519.03 -1.28 -21.91 16 19 C 0.11 1.60 6.35 86.19 0.55 2.15 16 20 C -0.15 -0.84 5.80 30.41 0.18 -0.66 16 21 C -0.12 -0.82 5.78 30.59 0.18 -0.64 16 22 C -0.57 -5.36 6.59 72.08 0.47 -4.88 16 23 S 2.57 62.69 5.73 -56.49 -0.32 62.36 16 24 O -1.00 -30.80 16.51 -127.68 -2.11 -32.91 16 25 O -1.00 -35.86 18.10 -127.68 -2.31 -38.17 16 26 H 0.04 1.50 6.64 -2.38 -0.02 1.49 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 30 H 0.06 2.06 7.83 -2.39 -0.02 2.04 16 31 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 32 H 0.07 3.71 5.52 -2.39 -0.01 3.69 16 33 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 34 H 0.05 2.10 6.64 -2.39 -0.02 2.09 16 35 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.42 10.84 8.47 -92.71 -0.79 10.06 16 37 H 0.13 2.59 6.87 -2.39 -0.02 2.58 16 38 H 0.16 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.10 1.21 7.92 -2.39 -0.02 1.19 16 40 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.10 0.20 8.11 -2.39 -0.02 0.18 16 42 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 44 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -88.87 382.19 -1.80 -90.67 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.19 Total: 13.43 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.09 Total: 13.92 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -5.31 Total: -131.58 kcal Atomic # 8 Polarization: -92.56 SS G_CDS: -4.47 Total: -97.02 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 62.69 SS G_CDS: -0.32 Total: 62.36 kcal Total: -88.87 -1.80 -90.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663403272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.352 kcal (2) G-P(sol) polarization free energy of solvation -88.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.40 seconds