Wall clock time and date at job start Tue Mar 31 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46798 * 2 1 4 4 C 1.34781 * 119.99923 * 275.64105 * 3 2 1 5 5 O 1.21282 * 119.99673 * 184.85853 * 4 3 2 6 6 C 1.50696 * 120.00026 * 4.87113 * 4 3 2 7 7 C 1.53000 * 109.47073 * 179.97438 * 6 4 3 8 8 S 1.81404 * 109.47011 * 179.97438 * 7 6 4 9 9 O 1.42102 * 110.54461 * 291.62476 * 8 7 6 10 10 O 1.42101 * 110.54169 * 68.37849 * 8 7 6 11 11 N 1.65601 * 104.44875 * 180.02562 * 8 7 6 12 12 C 1.46509 * 119.99986 * 64.99911 * 11 8 7 13 13 C 1.46493 * 120.00106 * 95.65147 * 3 2 1 14 14 H 1.08999 * 110.89220 * 179.73508 * 13 3 2 15 15 C 1.55160 * 111.00395 * 303.61958 * 13 3 2 16 16 C 1.54323 * 102.94394 * 82.56848 * 15 13 3 17 17 N 1.47029 * 107.26996 * 22.19629 * 16 15 13 18 18 C 1.36935 * 125.64693 * 180.78770 * 17 16 15 19 19 H 1.08000 * 119.99866 * 174.75800 * 18 17 16 20 20 C 1.38815 * 120.00066 * 354.76680 * 18 17 16 21 21 N 1.31614 * 120.00160 * 5.46652 * 20 18 17 22 22 Si 1.86798 * 119.99850 * 185.46661 * 20 18 17 23 23 H 1.48496 * 109.47445 * 94.99584 * 22 20 18 24 24 H 1.48505 * 109.46931 * 214.99569 * 22 20 18 25 25 H 1.48497 * 109.47201 * 334.99161 * 22 20 18 26 26 C 1.47419 * 108.70418 * 1.05771 * 17 16 15 27 27 H 1.09004 * 109.47417 * 65.76195 * 1 2 3 28 28 H 1.09003 * 109.47430 * 185.75899 * 1 2 3 29 29 H 1.08997 * 109.46976 * 305.76179 * 1 2 3 30 30 H 1.09004 * 109.46609 * 240.00093 * 2 1 3 31 31 H 1.08992 * 109.46976 * 120.00359 * 2 1 3 32 32 H 1.09000 * 109.47048 * 299.99143 * 6 4 3 33 33 H 1.08998 * 109.47453 * 59.99111 * 6 4 3 34 34 H 1.08993 * 109.47214 * 300.00267 * 7 6 4 35 35 H 1.09005 * 109.47040 * 60.00324 * 7 6 4 36 36 H 0.96999 * 120.00421 * 245.00145 * 11 8 7 37 37 H 1.08994 * 109.46766 * 180.02562 * 12 11 8 38 38 H 1.08999 * 109.47092 * 300.00210 * 12 11 8 39 39 H 1.08998 * 109.46659 * 60.00518 * 12 11 8 40 40 H 1.09000 * 110.71780 * 324.20708 * 15 13 3 41 41 H 1.08996 * 110.71846 * 200.93691 * 15 13 3 42 42 H 1.08991 * 109.88467 * 262.77965 * 16 15 13 43 43 H 1.09006 * 109.88053 * 141.60931 * 16 15 13 44 44 H 0.96999 * 120.00169 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.37007 * 94.70574 * 26 17 16 46 46 H 1.08995 * 110.36807 * 217.03333 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1347 2.0548 -1.1616 5 8 2.6211 3.1658 -1.1722 6 6 1.6602 1.4277 -2.4471 7 6 1.9051 2.3948 -3.6071 8 16 1.3347 1.6395 -5.1547 9 8 2.1617 0.5390 -5.5070 10 8 -0.0815 1.5231 -5.1603 11 7 1.6560 2.7783 -6.3132 12 6 3.0416 3.1499 -6.6109 13 6 2.3802 2.0302 1.2625 14 1 2.7273 3.0490 1.0903 15 6 1.1916 2.0086 2.2596 16 6 1.2921 0.6022 2.8868 17 7 2.6774 0.1429 2.7089 18 6 3.1754 -1.0666 3.1143 19 1 4.1878 -1.3456 2.8622 20 6 2.3790 -1.9340 3.8493 21 7 1.1136 -1.6430 4.0646 22 14 3.1032 -3.5145 4.5326 23 1 3.5403 -3.2932 5.9345 24 1 2.0752 -4.5856 4.4979 25 1 4.2698 -3.9212 3.7087 26 6 3.4430 1.2025 2.0276 27 1 -0.3634 0.4219 -0.9371 28 1 -0.3634 -1.0225 0.1031 29 1 -0.3633 0.6006 0.8339 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.2080 0.5020 -2.6236 33 1 0.5945 1.2109 -2.3740 34 1 1.3573 3.3203 -3.4305 35 1 2.9709 2.6118 -3.6804 36 1 0.9269 3.1995 -6.7948 37 1 3.0542 3.9079 -7.3940 38 1 3.5119 3.5486 -5.7121 39 1 3.5893 2.2697 -6.9477 40 1 0.2447 2.1295 1.7335 41 1 1.3125 2.7798 3.0204 42 1 0.6078 -0.0790 2.3811 43 1 1.0515 0.6519 3.9489 44 1 0.5572 -2.2490 4.5784 45 1 3.9574 1.8278 2.7573 46 1 4.1576 0.7656 1.3302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665715743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:55 Heat of formation + Delta-G solvation = -69.573529 kcal Electronic energy + Delta-G solvation = -28222.162253 eV Core-core repulsion = 24275.447015 eV Total energy + Delta-G solvation = -3946.715239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 6.51 seconds Orbital eigenvalues (eV) -40.11992 -37.70594 -37.35568 -36.21605 -35.33642 -34.69937 -33.40016 -32.18925 -30.33932 -29.32209 -27.23048 -26.35234 -25.41870 -24.42796 -22.77193 -20.75085 -20.13113 -19.60864 -18.71298 -18.01775 -17.47269 -17.03662 -16.73394 -16.24909 -15.87888 -15.51905 -14.98038 -14.73606 -14.30377 -14.10889 -13.99086 -13.82573 -13.41118 -13.19868 -13.14258 -12.64480 -12.38164 -12.34298 -12.24531 -12.13828 -12.00332 -11.95113 -11.90855 -11.70458 -11.26141 -11.12967 -11.01999 -10.91938 -10.77097 -10.52632 -10.23681 -10.16925 -9.97474 -9.93379 -9.70180 -9.44587 -8.72003 -8.28439 -6.87734 -5.81223 -3.14850 -0.03619 2.41377 2.74944 3.20406 3.35452 3.41878 3.42979 3.53603 3.95292 4.20311 4.43034 4.56407 4.58100 4.67078 5.02413 5.07781 5.22254 5.32098 5.33440 5.36268 5.38333 5.44310 5.49828 5.57989 5.65574 5.74504 5.83925 5.89595 6.14396 6.17610 6.28525 6.44485 6.48061 6.54445 6.57090 6.68669 6.75943 7.06604 7.48157 7.55007 7.74364 7.77793 8.15843 8.36073 9.12794 9.72317 10.37713 11.29849 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.002906 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.606588 B = 9634.390838 C =10043.985582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.075 3.925 3 N -0.581 5.581 4 C 0.521 3.479 5 O -0.553 6.553 6 C -0.136 4.136 7 C -0.608 4.608 8 S 2.613 3.387 9 O -0.953 6.953 10 O -0.956 6.956 11 N -1.124 6.124 12 C 0.080 3.920 13 C 0.122 3.878 14 H 0.099 0.901 15 C -0.158 4.158 16 C 0.167 3.833 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.125 3.875 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.417 0.583 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.031 0.969 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 9.851 -17.817 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.047 4.047 3 N -0.312 5.312 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.177 4.177 7 C -0.738 4.738 8 S 2.704 3.296 9 O -0.943 6.943 10 O -0.946 6.946 11 N -0.883 5.883 12 C -0.067 4.067 13 C 0.018 3.982 14 H 0.117 0.883 15 C -0.197 4.197 16 C 0.043 3.957 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.002 4.002 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.251 0.749 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.215 9.300 -17.765 20.053 hybrid contribution 0.291 -0.085 0.650 0.717 sum 0.076 9.215 -17.115 19.438 Atomic orbital electron populations 1.22341 0.96215 1.02931 1.01377 1.22228 0.94425 0.81767 1.06302 1.47838 1.63235 1.14459 1.05641 1.20089 0.78704 0.85625 0.84856 1.90638 1.45706 1.20195 1.86704 1.21459 1.04805 0.98957 0.92513 1.30375 1.14272 1.11956 1.17182 1.04979 0.74355 0.74279 0.75948 1.93612 1.70243 1.49269 1.81163 1.93617 1.29123 1.85506 1.86404 1.55390 1.14371 1.62917 1.55641 1.21531 0.81070 1.01822 1.02227 1.22273 0.96529 0.96837 0.82538 0.88276 1.23309 0.97338 1.01162 0.97894 1.21375 0.86622 0.88726 0.98950 1.44603 1.06074 1.13837 1.68397 1.19037 0.97581 0.91409 1.28213 0.90413 1.24802 0.95981 0.98999 1.00169 1.69960 1.04830 1.37453 1.44092 0.86146 0.77966 0.82746 0.79175 1.21673 1.21742 1.20630 1.21905 0.93330 0.90956 0.94033 0.93934 0.91301 0.91172 0.91982 0.84141 0.87383 0.87249 0.84170 0.84362 0.74889 0.89980 0.92014 0.91250 0.91642 0.91420 0.92539 0.93720 0.93658 0.95155 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.15 37.16 0.34 -2.22 16 2 C 0.08 1.23 4.88 -4.04 -0.02 1.21 16 3 N -0.58 -9.57 2.53 -163.67 -0.41 -9.99 16 4 C 0.52 8.07 7.62 -10.99 -0.08 7.99 16 5 O -0.55 -9.80 15.37 5.56 0.09 -9.71 16 6 C -0.14 -1.60 4.38 -27.88 -0.12 -1.73 16 7 C -0.61 -5.71 5.31 37.16 0.20 -5.51 16 8 S 2.61 24.92 5.46 -107.50 -0.59 24.33 16 9 O -0.95 -12.16 17.73 -57.54 -1.02 -13.18 16 10 O -0.96 -11.98 18.08 -57.54 -1.04 -13.02 16 11 N -1.12 -7.39 6.08 -16.63 -0.10 -7.49 16 12 C 0.08 0.41 11.03 59.85 0.66 1.07 16 13 C 0.12 2.17 3.67 -65.78 -0.24 1.93 16 14 H 0.10 1.73 7.02 -51.93 -0.36 1.37 16 15 C -0.16 -2.83 6.00 -24.90 -0.15 -2.98 16 16 C 0.17 3.71 4.17 -3.06 -0.01 3.70 16 17 N -0.60 -14.04 1.91 -170.07 -0.32 -14.36 16 18 C -0.23 -6.06 9.91 -15.06 -0.15 -6.21 16 19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 20 C 0.00 -0.07 5.48 -17.43 -0.10 -0.16 16 21 N -0.92 -25.07 10.35 55.49 0.57 -24.50 16 22 Si 0.91 21.14 29.56 -169.99 -5.02 16.12 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.12 2.48 6.54 -2.53 -0.02 2.47 16 27 H 0.04 0.54 6.29 -51.93 -0.33 0.21 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.13 4.86 -51.93 -0.25 0.88 16 30 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 31 H 0.14 2.87 4.30 -51.93 -0.22 2.65 16 32 H 0.11 1.13 7.29 -51.93 -0.38 0.75 16 33 H 0.11 1.16 6.31 -51.93 -0.33 0.83 16 34 H 0.14 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.14 1.17 7.73 -51.92 -0.40 0.77 16 36 H 0.42 2.05 8.92 -34.48 -0.31 1.74 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.25 7.73 -51.93 -0.40 -0.15 16 39 H 0.07 0.39 8.04 -51.93 -0.42 -0.03 16 40 H 0.06 1.10 6.58 -51.93 -0.34 0.76 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.31 4.78 -51.93 -0.25 1.07 16 43 H 0.04 1.13 7.36 -51.93 -0.38 0.75 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -34.05 365.40 -8.84 -42.89 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.80 Total: 3.85 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 0.31 Total: -0.45 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.26 Total: -56.33 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.97 Total: -35.91 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 24.92 SS G_CDS: -0.59 Total: 24.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.05 -8.84 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665715743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.683 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.51 seconds