Wall clock time and date at job start Tue Mar 31 2020 18:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46798 * 2 1 4 4 C 1.34781 * 119.99923 * 275.64105 * 3 2 1 5 5 O 1.21282 * 119.99673 * 184.85853 * 4 3 2 6 6 C 1.50696 * 120.00026 * 4.87113 * 4 3 2 7 7 C 1.53000 * 109.47073 * 179.97438 * 6 4 3 8 8 S 1.81404 * 109.47011 * 179.97438 * 7 6 4 9 9 O 1.42102 * 110.54461 * 291.62476 * 8 7 6 10 10 O 1.42101 * 110.54169 * 68.37849 * 8 7 6 11 11 N 1.65601 * 104.44875 * 180.02562 * 8 7 6 12 12 C 1.46509 * 119.99986 * 64.99911 * 11 8 7 13 13 C 1.46493 * 120.00106 * 95.65147 * 3 2 1 14 14 H 1.08999 * 110.89220 * 179.73508 * 13 3 2 15 15 C 1.55160 * 111.00395 * 303.61958 * 13 3 2 16 16 C 1.54323 * 102.94394 * 82.56848 * 15 13 3 17 17 N 1.47029 * 107.26996 * 22.19629 * 16 15 13 18 18 C 1.36935 * 125.64693 * 180.78770 * 17 16 15 19 19 H 1.08000 * 119.99866 * 174.75800 * 18 17 16 20 20 C 1.38815 * 120.00066 * 354.76680 * 18 17 16 21 21 N 1.31614 * 120.00160 * 5.46652 * 20 18 17 22 22 Si 1.86798 * 119.99850 * 185.46661 * 20 18 17 23 23 H 1.48496 * 109.47445 * 94.99584 * 22 20 18 24 24 H 1.48505 * 109.46931 * 214.99569 * 22 20 18 25 25 H 1.48497 * 109.47201 * 334.99161 * 22 20 18 26 26 C 1.47419 * 108.70418 * 1.05771 * 17 16 15 27 27 H 1.09004 * 109.47417 * 65.76195 * 1 2 3 28 28 H 1.09003 * 109.47430 * 185.75899 * 1 2 3 29 29 H 1.08997 * 109.46976 * 305.76179 * 1 2 3 30 30 H 1.09004 * 109.46609 * 240.00093 * 2 1 3 31 31 H 1.08992 * 109.46976 * 120.00359 * 2 1 3 32 32 H 1.09000 * 109.47048 * 299.99143 * 6 4 3 33 33 H 1.08998 * 109.47453 * 59.99111 * 6 4 3 34 34 H 1.08993 * 109.47214 * 300.00267 * 7 6 4 35 35 H 1.09005 * 109.47040 * 60.00324 * 7 6 4 36 36 H 0.96999 * 120.00421 * 245.00145 * 11 8 7 37 37 H 1.08994 * 109.46766 * 180.02562 * 12 11 8 38 38 H 1.08999 * 109.47092 * 300.00210 * 12 11 8 39 39 H 1.08998 * 109.46659 * 60.00518 * 12 11 8 40 40 H 1.09000 * 110.71780 * 324.20708 * 15 13 3 41 41 H 1.08996 * 110.71846 * 200.93691 * 15 13 3 42 42 H 1.08991 * 109.88467 * 262.77965 * 16 15 13 43 43 H 1.09006 * 109.88053 * 141.60931 * 16 15 13 44 44 H 0.96999 * 120.00169 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.37007 * 94.70574 * 26 17 16 46 46 H 1.08995 * 110.36807 * 217.03333 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1347 2.0548 -1.1616 5 8 2.6211 3.1658 -1.1722 6 6 1.6602 1.4277 -2.4471 7 6 1.9051 2.3948 -3.6071 8 16 1.3347 1.6395 -5.1547 9 8 2.1617 0.5390 -5.5070 10 8 -0.0815 1.5231 -5.1603 11 7 1.6560 2.7783 -6.3132 12 6 3.0416 3.1499 -6.6109 13 6 2.3802 2.0302 1.2625 14 1 2.7273 3.0490 1.0903 15 6 1.1916 2.0086 2.2596 16 6 1.2921 0.6022 2.8868 17 7 2.6774 0.1429 2.7089 18 6 3.1754 -1.0666 3.1143 19 1 4.1878 -1.3456 2.8622 20 6 2.3790 -1.9340 3.8493 21 7 1.1136 -1.6430 4.0646 22 14 3.1032 -3.5145 4.5326 23 1 3.5403 -3.2932 5.9345 24 1 2.0752 -4.5856 4.4979 25 1 4.2698 -3.9212 3.7087 26 6 3.4430 1.2025 2.0276 27 1 -0.3634 0.4219 -0.9371 28 1 -0.3634 -1.0225 0.1031 29 1 -0.3633 0.6006 0.8339 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.2080 0.5020 -2.6236 33 1 0.5945 1.2109 -2.3740 34 1 1.3573 3.3203 -3.4305 35 1 2.9709 2.6118 -3.6804 36 1 0.9269 3.1995 -6.7948 37 1 3.0542 3.9079 -7.3940 38 1 3.5119 3.5486 -5.7121 39 1 3.5893 2.2697 -6.9477 40 1 0.2447 2.1295 1.7335 41 1 1.3125 2.7798 3.0204 42 1 0.6078 -0.0790 2.3811 43 1 1.0515 0.6519 3.9489 44 1 0.5572 -2.2490 4.5784 45 1 3.9574 1.8278 2.7573 46 1 4.1576 0.7656 1.3302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665715743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:53 Heat of formation + Delta-G solvation = -94.653151 kcal Electronic energy + Delta-G solvation = -28223.249787 eV Core-core repulsion = 24275.447015 eV Total energy + Delta-G solvation = -3947.802773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.44179 -39.18937 -38.21472 -37.07663 -36.17775 -35.84976 -34.61922 -33.72535 -31.73890 -31.03305 -28.75907 -26.79122 -26.73790 -25.99807 -24.05454 -22.09552 -21.89755 -20.34562 -19.91230 -18.96412 -18.87633 -18.45783 -17.61458 -17.22798 -16.94047 -16.65700 -16.58141 -15.78225 -15.65350 -15.59389 -15.10584 -14.83635 -14.49963 -14.36422 -14.00124 -13.79759 -13.75046 -13.66422 -13.38655 -13.33326 -13.23744 -13.13336 -12.89346 -12.85772 -12.68019 -12.55585 -12.48395 -12.18324 -12.08853 -11.98907 -11.91774 -11.75356 -11.59117 -11.48588 -10.78894 -10.66570 -10.43688 -9.68727 -8.76641 -7.82137 -5.15721 -0.78740 1.48857 1.50666 1.54879 1.58284 1.74673 2.01896 2.51588 2.74936 3.22371 3.33171 3.37553 3.55347 3.69302 3.79224 3.92092 4.03196 4.08962 4.23994 4.32111 4.34596 4.42774 4.51095 4.63499 4.66948 4.69427 4.76270 4.82138 4.88376 4.94642 4.95894 5.00244 5.04186 5.06212 5.30245 5.42836 5.52524 5.68471 5.72930 5.85255 6.12639 6.23387 6.49999 7.11564 7.14439 7.79525 8.44207 9.27332 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.002906 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.606588 B = 9634.390838 C =10043.985582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 N -0.585 5.585 4 C 0.521 3.479 5 O -0.574 6.574 6 C -0.144 4.144 7 C -0.602 4.602 8 S 2.636 3.364 9 O -0.987 6.987 10 O -0.987 6.987 11 N -1.116 6.116 12 C 0.068 3.932 13 C 0.133 3.867 14 H 0.108 0.892 15 C -0.144 4.144 16 C 0.179 3.821 17 N -0.614 5.614 18 C -0.238 4.238 19 H 0.078 0.922 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 0.968 3.032 23 H -0.294 1.294 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.124 3.876 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.427 0.573 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.004 0.996 44 H 0.246 0.754 45 H 0.034 0.966 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 10.913 -19.674 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.044 4.044 3 N -0.316 5.316 4 C 0.310 3.690 5 O -0.455 6.455 6 C -0.185 4.185 7 C -0.732 4.732 8 S 2.729 3.271 9 O -0.977 6.977 10 O -0.978 6.978 11 N -0.878 5.878 12 C -0.078 4.078 13 C 0.028 3.972 14 H 0.126 0.874 15 C -0.183 4.183 16 C 0.054 3.946 17 N -0.341 5.341 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.247 4.247 21 N -0.588 5.588 22 Si 0.797 3.203 23 H -0.221 1.221 24 H -0.222 1.222 25 H -0.196 1.196 26 C -0.002 4.002 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.262 0.738 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.022 0.978 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.221 10.375 -19.658 22.229 hybrid contribution 0.229 -0.347 1.184 1.255 sum 0.449 10.028 -18.474 21.025 Atomic orbital electron populations 1.22272 0.95173 1.02712 1.02190 1.22094 0.95290 0.81592 1.05461 1.47864 1.63543 1.14525 1.05658 1.20618 0.77824 0.85263 0.85343 1.90628 1.46608 1.21201 1.87063 1.21593 1.05816 0.99879 0.91174 1.30336 1.15301 1.11786 1.15749 1.04085 0.73008 0.74018 0.76037 1.93571 1.70793 1.51436 1.81874 1.93571 1.31017 1.86204 1.86974 1.55097 1.15540 1.62375 1.54760 1.21795 0.79927 1.02324 1.03776 1.22084 0.95309 0.96777 0.82992 0.87384 1.23173 0.98347 0.98602 0.98151 1.21124 0.85954 0.90920 0.96564 1.44737 1.06961 1.13906 1.68463 1.19291 0.97482 0.92449 1.27499 0.90453 1.25458 0.96393 1.01777 1.01038 1.70140 1.05692 1.38140 1.44848 0.85223 0.77342 0.79556 0.78154 1.22147 1.22220 1.19566 1.21995 0.93783 0.90406 0.94029 0.91187 0.91647 0.92631 0.89678 0.88070 0.85995 0.85835 0.83027 0.83208 0.73755 0.87513 0.90738 0.92009 0.90158 0.90267 0.93968 0.97773 0.94418 0.94830 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 9.15 71.98 0.66 -4.09 16 2 C 0.08 2.48 4.88 86.38 0.42 2.90 16 3 N -0.59 -18.29 2.53 -790.12 -2.00 -20.29 16 4 C 0.52 14.87 7.62 87.66 0.67 15.54 16 5 O -0.57 -18.91 15.37 -3.04 -0.05 -18.96 16 6 C -0.14 -2.99 4.38 29.85 0.13 -2.86 16 7 C -0.60 -9.60 5.31 71.98 0.38 -9.22 16 8 S 2.64 45.10 5.46 -56.49 -0.31 44.79 16 9 O -0.99 -23.74 17.73 -127.65 -2.26 -26.01 16 10 O -0.99 -23.09 18.08 -127.65 -2.31 -25.40 16 11 N -1.12 -12.05 6.08 -206.53 -1.25 -13.31 16 12 C 0.07 0.51 11.03 127.77 1.41 1.92 16 13 C 0.13 4.54 3.67 46.39 0.17 4.71 16 14 H 0.11 3.56 7.02 -2.39 -0.02 3.55 16 15 C -0.14 -5.04 6.00 31.78 0.19 -4.85 16 16 C 0.18 8.08 4.17 86.73 0.36 8.44 16 17 N -0.61 -28.98 1.91 -691.98 -1.32 -30.29 16 18 C -0.24 -12.48 9.91 84.03 0.83 -11.65 16 19 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 20 C -0.05 -2.81 5.48 84.86 0.47 -2.35 16 21 N -0.94 -52.83 10.35 21.65 0.22 -52.61 16 22 Si 0.97 44.02 29.56 68.60 2.03 46.05 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C 0.12 4.89 6.54 86.86 0.57 5.45 16 27 H 0.07 1.59 6.29 -2.38 -0.01 1.58 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.75 4.86 -2.39 -0.01 1.74 16 30 H 0.08 2.26 6.72 -2.38 -0.02 2.24 16 31 H 0.10 4.14 4.30 -2.39 -0.01 4.13 16 32 H 0.12 2.21 7.29 -2.39 -0.02 2.19 16 33 H 0.12 2.22 6.31 -2.39 -0.02 2.21 16 34 H 0.15 2.12 8.10 -2.39 -0.02 2.10 16 35 H 0.15 2.07 7.73 -2.39 -0.02 2.06 16 36 H 0.43 3.18 8.92 -96.74 -0.86 2.32 16 37 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.07 0.38 7.73 -2.39 -0.02 0.37 16 39 H 0.06 0.58 8.04 -2.39 -0.02 0.56 16 40 H 0.08 2.59 6.58 -2.39 -0.02 2.57 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.04 2.02 4.78 -2.39 -0.01 2.01 16 43 H 0.00 0.21 7.36 -2.38 -0.02 0.19 16 44 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.61 365.40 -0.84 -74.45 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.14 Total: 17.62 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.26 Total: 3.95 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -4.35 Total: -116.50 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -4.62 Total: -70.36 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 45.10 SS G_CDS: -0.31 Total: 44.79 kcal Total: -73.61 -0.84 -74.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665715743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.199 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds