Wall clock time and date at job start Tue Mar 31 2020 17:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46803 * 2 1 4 4 N 1.46497 * 109.46939 * 119.99676 * 2 1 3 5 5 S 1.65599 * 120.00110 * 265.00142 * 4 2 1 6 6 C 1.81397 * 104.44825 * 65.00280 * 5 4 2 7 7 O 1.42105 * 104.27797 * 181.07392 * 5 4 2 8 8 O 1.42101 * 104.27901 * 308.93100 * 5 4 2 9 9 C 1.50701 * 109.47348 * 240.00161 * 2 1 3 10 10 O 1.21286 * 119.99457 * 239.99560 * 9 2 1 11 11 N 1.34769 * 120.00279 * 60.00090 * 9 2 1 12 12 C 1.46498 * 120.00107 * 179.97438 * 11 9 2 13 13 H 1.08994 * 109.47363 * 324.99823 * 12 11 9 14 14 C 1.53007 * 109.46620 * 84.99901 * 12 11 9 15 15 C 1.53005 * 109.46646 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47219 * 300.00016 * 15 14 12 17 17 H 1.08994 * 109.47006 * 300.00108 * 16 15 14 18 18 N 1.46507 * 109.46679 * 179.97438 * 16 15 14 19 19 C 1.36934 * 119.99643 * 85.00314 * 18 16 15 20 20 H 1.08002 * 120.00022 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00018 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00431 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47054 * 60.00226 * 23 21 19 25 25 H 1.48494 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47139 * 300.00502 * 23 21 19 27 27 C 1.52996 * 109.46981 * 60.00338 * 16 15 14 28 28 C 1.53000 * 109.47103 * 204.99448 * 12 11 9 29 29 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47322 * 300.00019 * 1 2 3 31 31 H 1.09000 * 109.46887 * 60.00426 * 1 2 3 32 32 H 0.96999 * 119.99844 * 85.00867 * 4 2 1 33 33 H 1.09003 * 109.47352 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47032 * 299.99803 * 6 5 4 35 35 H 1.09000 * 109.47124 * 60.00075 * 6 5 4 36 36 H 0.97002 * 120.00078 * 359.97438 * 11 9 2 37 37 H 1.08998 * 109.47087 * 299.99632 * 14 12 11 38 38 H 1.08997 * 109.47401 * 60.00660 * 14 12 11 39 39 H 1.08996 * 109.47113 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.46964 * 59.99982 * 15 14 12 41 41 H 0.96996 * 119.99803 * 264.99243 * 18 16 15 42 42 H 0.96994 * 120.00682 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47180 * 179.97438 * 27 16 15 44 44 H 1.08994 * 109.47438 * 60.00034 * 27 16 15 45 45 H 1.09000 * 109.47721 * 300.00430 * 28 12 11 46 46 H 1.09002 * 109.46627 * 60.00505 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4121 0.1773 2.5505 6 6 0.8406 0.8989 3.0984 7 8 2.8605 -0.8028 3.4766 8 8 3.2873 1.1908 2.0751 9 6 2.0324 -0.7104 -1.2305 10 8 2.7297 -1.6964 -1.1191 11 7 1.7069 -0.2499 -2.4545 12 6 2.1958 -0.9402 -3.6507 13 1 3.1951 -1.3319 -3.4612 14 6 1.2522 -2.0945 -3.9947 15 6 1.7624 -2.8150 -5.2444 16 6 1.8132 -1.8314 -6.4152 17 1 0.8138 -1.4397 -6.6043 18 7 2.3023 -2.5213 -7.6116 19 6 1.4301 -3.2175 -8.4051 20 1 0.3818 -3.2583 -8.1488 21 6 1.8934 -3.8707 -9.5389 22 7 3.1711 -3.8214 -9.8509 23 14 0.7038 -4.8210 -10.6211 24 1 -0.3387 -3.8990 -11.1391 25 1 1.4430 -5.4229 -11.7596 26 1 0.0613 -5.8970 -9.8244 27 6 2.7567 -0.6772 -6.0711 28 6 2.2469 0.0430 -4.8218 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.1110 -1.6561 1.1949 33 1 1.0076 1.4947 3.9958 34 1 0.4385 1.5353 2.3100 35 1 0.1314 0.1009 3.3184 36 1 1.1489 0.5385 -2.5436 37 1 1.2157 -2.7949 -3.1604 38 1 0.2528 -1.7027 -4.1843 39 1 1.0905 -3.6376 -5.4893 40 1 2.7619 -3.2067 -5.0552 41 1 3.2439 -2.4847 -7.8415 42 1 3.4950 -4.2781 -10.6430 43 1 2.7933 0.0233 -6.9054 44 1 3.7561 -1.0689 -5.8821 45 1 1.2476 0.4349 -5.0113 46 1 2.9191 0.8653 -4.5766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714310917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:34 Heat of formation + Delta-G solvation = -109.597367 kcal Electronic energy + Delta-G solvation = -27008.829209 eV Core-core repulsion = 23060.378407 eV Total energy + Delta-G solvation = -3948.450803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.37618 -38.23734 -37.52690 -36.38020 -35.90948 -34.94512 -33.13323 -31.01373 -30.43667 -30.28202 -29.81413 -27.39294 -24.78270 -23.45596 -22.39177 -21.23648 -20.51412 -20.03589 -19.54057 -18.51132 -17.60158 -17.01665 -16.69599 -16.43599 -16.06648 -15.46084 -15.28303 -14.95397 -14.37096 -14.22487 -13.90986 -13.84626 -13.70515 -13.60710 -13.47648 -13.01297 -12.81778 -12.62391 -12.51973 -12.46950 -12.32207 -12.18328 -12.04595 -11.83552 -11.51718 -11.46264 -11.07452 -10.81495 -10.78607 -10.69277 -10.36072 -10.21846 -10.13205 -9.82341 -9.78261 -9.57452 -9.05882 -8.85290 -6.94305 -5.75253 -3.03949 -0.23386 2.16002 2.38358 2.94463 3.35880 3.43949 3.48420 3.49572 3.70616 4.08555 4.23530 4.36761 4.41621 4.51343 4.59500 4.74858 4.86162 4.95939 5.01226 5.14484 5.24505 5.37443 5.50564 5.53052 5.58030 5.65485 5.70912 5.81937 5.85178 5.99818 6.21034 6.21943 6.27550 6.44253 6.54091 6.54782 6.61893 6.70771 6.97521 7.14116 7.31759 7.70058 8.00718 8.43555 9.54296 10.13033 10.47395 11.47402 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.001995 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.718787 B =14030.016399 C =14114.527947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.126 3.874 3 H 0.118 0.882 4 N -1.101 6.101 5 S 2.615 3.385 6 C -0.676 4.676 7 O -0.954 6.954 8 O -0.955 6.955 9 C 0.512 3.488 10 O -0.525 6.525 11 N -0.721 5.721 12 C 0.144 3.856 13 H 0.089 0.911 14 C -0.122 4.122 15 C -0.133 4.133 16 C 0.178 3.822 17 H 0.046 0.954 18 N -0.726 5.726 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.427 0.573 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.398 0.602 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 14.162 25.538 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.136 0.864 4 N -0.861 5.861 5 S 2.706 3.294 6 C -0.826 4.826 7 O -0.944 6.944 8 O -0.945 6.945 9 C 0.295 3.705 10 O -0.400 6.400 11 N -0.372 5.372 12 C 0.040 3.960 13 H 0.107 0.893 14 C -0.162 4.162 15 C -0.174 4.174 16 C 0.068 3.932 17 H 0.064 0.936 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.160 4.160 28 C -0.157 4.157 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.233 0.767 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.038 13.630 25.882 30.086 hybrid contribution -1.350 -0.521 -0.812 1.659 sum -8.388 13.109 25.070 29.508 Atomic orbital electron populations 1.22438 0.92933 1.04450 1.03686 1.20713 0.95292 0.97517 0.85075 0.86441 1.55413 1.83930 1.20995 1.25791 1.04755 0.76621 0.74578 0.73417 1.30672 1.24578 1.14279 1.13070 1.93641 1.79352 1.58735 1.62656 1.93633 1.60712 1.60846 1.79294 1.20383 0.80548 0.85009 0.84528 1.90742 1.37088 1.25863 1.86298 1.46124 1.53495 1.31942 1.05621 1.21167 0.99095 0.92844 0.82846 0.89314 1.21888 0.98507 0.96893 0.98874 1.22233 1.01195 0.99732 0.94211 1.20233 0.95777 0.90231 0.86994 0.93630 1.42427 1.08713 1.60480 1.24970 1.19183 0.90847 1.23878 1.02992 0.91308 1.24745 0.96050 1.01402 0.98869 1.69647 1.12514 1.48074 1.27932 0.86283 0.79959 0.79858 0.80165 1.21327 1.21732 1.21326 1.21748 1.00045 0.98320 0.95877 1.21742 1.01822 0.97555 0.94596 0.90625 0.91054 0.90196 0.73551 0.85136 0.85189 0.84957 0.76741 0.92413 0.92288 0.91812 0.92490 0.78288 0.93481 0.91320 0.91949 0.91525 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 9.38 37.16 0.35 -0.24 16 2 C 0.13 0.81 3.22 -69.08 -0.22 0.58 16 3 H 0.12 0.55 7.48 -51.93 -0.39 0.16 16 4 N -1.10 -7.90 5.15 -5.88 -0.03 -7.93 16 5 S 2.62 18.06 6.08 -107.50 -0.65 17.41 16 6 C -0.68 -1.51 10.04 101.05 1.01 -0.49 16 7 O -0.95 -10.31 18.08 -57.54 -1.04 -11.35 16 8 O -0.95 -10.11 17.39 -57.54 -1.00 -11.11 16 9 C 0.51 5.33 7.18 -10.99 -0.08 5.25 16 10 O -0.52 -7.84 15.65 5.55 0.09 -7.75 16 11 N -0.72 -6.48 4.97 -53.81 -0.27 -6.75 16 12 C 0.14 1.75 2.46 -67.93 -0.17 1.58 16 13 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 14 C -0.12 -1.68 5.50 -26.72 -0.15 -1.83 16 15 C -0.13 -2.34 5.50 -26.73 -0.15 -2.48 16 16 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 17 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 18 N -0.73 -17.91 5.12 -53.43 -0.27 -18.18 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.12 -1.86 5.39 -26.76 -0.14 -2.01 16 28 C -0.12 -1.35 5.39 -26.75 -0.14 -1.50 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.08 5.78 -51.93 -0.30 -0.22 16 31 H 0.08 0.16 7.56 -51.93 -0.39 -0.23 16 32 H 0.43 3.39 8.17 -34.47 -0.28 3.10 16 33 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 34 H 0.13 0.06 6.77 -51.92 -0.35 -0.29 16 35 H 0.13 0.12 8.14 -51.92 -0.42 -0.30 16 36 H 0.40 2.20 8.02 -40.82 -0.33 1.87 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -38.54 381.57 -9.22 -47.76 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.37 Total: 7.46 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.12 Total: -5.15 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.15 Total: -60.32 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.95 Total: -30.20 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 18.06 SS G_CDS: -0.65 Total: 17.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.54 -9.22 -47.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714310917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.838 kcal (2) G-P(sol) polarization free energy of solvation -38.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds