Wall clock time and date at job start Tue Mar 31 2020 17:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46803 * 2 1 4 4 N 1.46497 * 109.46939 * 119.99676 * 2 1 3 5 5 S 1.65599 * 120.00110 * 265.00142 * 4 2 1 6 6 C 1.81397 * 104.44825 * 65.00280 * 5 4 2 7 7 O 1.42105 * 104.27797 * 181.07392 * 5 4 2 8 8 O 1.42101 * 104.27901 * 308.93100 * 5 4 2 9 9 C 1.50701 * 109.47348 * 240.00161 * 2 1 3 10 10 O 1.21286 * 119.99457 * 239.99560 * 9 2 1 11 11 N 1.34769 * 120.00279 * 60.00090 * 9 2 1 12 12 C 1.46498 * 120.00107 * 179.97438 * 11 9 2 13 13 H 1.08994 * 109.47363 * 324.99823 * 12 11 9 14 14 C 1.53007 * 109.46620 * 84.99901 * 12 11 9 15 15 C 1.53005 * 109.46646 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47219 * 300.00016 * 15 14 12 17 17 H 1.08994 * 109.47006 * 300.00108 * 16 15 14 18 18 N 1.46507 * 109.46679 * 179.97438 * 16 15 14 19 19 C 1.36934 * 119.99643 * 85.00314 * 18 16 15 20 20 H 1.08002 * 120.00022 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00018 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00431 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47054 * 60.00226 * 23 21 19 25 25 H 1.48494 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47139 * 300.00502 * 23 21 19 27 27 C 1.52996 * 109.46981 * 60.00338 * 16 15 14 28 28 C 1.53000 * 109.47103 * 204.99448 * 12 11 9 29 29 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47322 * 300.00019 * 1 2 3 31 31 H 1.09000 * 109.46887 * 60.00426 * 1 2 3 32 32 H 0.96999 * 119.99844 * 85.00867 * 4 2 1 33 33 H 1.09003 * 109.47352 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47032 * 299.99803 * 6 5 4 35 35 H 1.09000 * 109.47124 * 60.00075 * 6 5 4 36 36 H 0.97002 * 120.00078 * 359.97438 * 11 9 2 37 37 H 1.08998 * 109.47087 * 299.99632 * 14 12 11 38 38 H 1.08997 * 109.47401 * 60.00660 * 14 12 11 39 39 H 1.08996 * 109.47113 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.46964 * 59.99982 * 15 14 12 41 41 H 0.96996 * 119.99803 * 264.99243 * 18 16 15 42 42 H 0.96994 * 120.00682 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47180 * 179.97438 * 27 16 15 44 44 H 1.08994 * 109.47438 * 60.00034 * 27 16 15 45 45 H 1.09000 * 109.47721 * 300.00430 * 28 12 11 46 46 H 1.09002 * 109.46627 * 60.00505 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4121 0.1773 2.5505 6 6 0.8406 0.8989 3.0984 7 8 2.8605 -0.8028 3.4766 8 8 3.2873 1.1908 2.0751 9 6 2.0324 -0.7104 -1.2305 10 8 2.7297 -1.6964 -1.1191 11 7 1.7069 -0.2499 -2.4545 12 6 2.1958 -0.9402 -3.6507 13 1 3.1951 -1.3319 -3.4612 14 6 1.2522 -2.0945 -3.9947 15 6 1.7624 -2.8150 -5.2444 16 6 1.8132 -1.8314 -6.4152 17 1 0.8138 -1.4397 -6.6043 18 7 2.3023 -2.5213 -7.6116 19 6 1.4301 -3.2175 -8.4051 20 1 0.3818 -3.2583 -8.1488 21 6 1.8934 -3.8707 -9.5389 22 7 3.1711 -3.8214 -9.8509 23 14 0.7038 -4.8210 -10.6211 24 1 -0.3387 -3.8990 -11.1391 25 1 1.4430 -5.4229 -11.7596 26 1 0.0613 -5.8970 -9.8244 27 6 2.7567 -0.6772 -6.0711 28 6 2.2469 0.0430 -4.8218 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.1110 -1.6561 1.1949 33 1 1.0076 1.4947 3.9958 34 1 0.4385 1.5353 2.3100 35 1 0.1314 0.1009 3.3184 36 1 1.1489 0.5385 -2.5436 37 1 1.2157 -2.7949 -3.1604 38 1 0.2528 -1.7027 -4.1843 39 1 1.0905 -3.6376 -5.4893 40 1 2.7619 -3.2067 -5.0552 41 1 3.2439 -2.4847 -7.8415 42 1 3.4950 -4.2781 -10.6430 43 1 2.7933 0.0233 -6.9054 44 1 3.7561 -1.0689 -5.8821 45 1 1.2476 0.4349 -5.0113 46 1 2.9191 0.8653 -4.5766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714310917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:33 Heat of formation + Delta-G solvation = -142.903071 kcal Electronic energy + Delta-G solvation = -27010.273453 eV Core-core repulsion = 23060.378407 eV Total energy + Delta-G solvation = -3949.895046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24286 -39.42687 -38.19268 -37.03250 -36.64303 -36.23790 -34.67022 -32.53865 -31.67229 -30.87717 -30.23221 -28.76995 -25.85408 -24.89222 -23.61507 -22.45702 -21.38850 -20.87695 -20.52711 -19.29921 -18.94742 -18.19260 -17.34383 -17.16004 -16.99117 -16.67664 -16.18190 -15.96221 -15.60578 -15.38087 -15.05337 -14.90295 -14.60155 -14.35286 -14.01064 -13.97513 -13.90335 -13.44186 -13.26233 -13.18784 -13.12298 -13.11067 -13.06691 -12.85298 -12.78587 -12.57147 -12.41132 -12.29315 -12.16557 -12.01314 -11.95685 -11.64285 -11.44218 -11.18854 -10.98959 -10.82521 -10.45344 -10.01862 -8.98587 -7.92431 -5.20690 -0.69800 1.46947 1.50160 1.56068 1.59790 1.65904 2.19048 2.57498 2.91602 3.26997 3.40249 3.52128 3.78593 3.86314 3.91615 3.97867 4.08566 4.12833 4.20567 4.31476 4.39468 4.42491 4.43291 4.55800 4.62183 4.67165 4.78501 4.87719 5.02108 5.02574 5.06155 5.14666 5.16749 5.27449 5.29958 5.35258 5.48343 5.55518 5.56674 5.66041 5.94717 6.30125 6.60082 7.27680 7.35272 8.13700 8.35424 9.31148 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.001995 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.718787 B =14030.016399 C =14114.527947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.127 3.873 3 H 0.139 0.861 4 N -1.109 6.109 5 S 2.612 3.388 6 C -0.645 4.645 7 O -1.004 7.004 8 O -1.002 7.002 9 C 0.504 3.496 10 O -0.579 6.579 11 N -0.704 5.704 12 C 0.151 3.849 13 H 0.058 0.942 14 C -0.109 4.109 15 C -0.124 4.124 16 C 0.173 3.827 17 H 0.051 0.949 18 N -0.741 5.741 19 C -0.235 4.235 20 H 0.077 0.923 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.280 1.280 27 C -0.115 4.115 28 C -0.105 4.105 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.421 0.579 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.421 0.579 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.033 0.967 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 16.823 27.089 33.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 H 0.157 0.843 4 N -0.867 5.867 5 S 2.710 3.290 6 C -0.800 4.800 7 O -0.995 6.995 8 O -0.992 6.992 9 C 0.290 3.710 10 O -0.458 6.458 11 N -0.356 5.356 12 C 0.046 3.954 13 H 0.076 0.924 14 C -0.148 4.148 15 C -0.165 4.165 16 C 0.065 3.935 17 H 0.069 0.931 18 N -0.380 5.380 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.801 3.199 24 H -0.201 1.201 25 H -0.225 1.225 26 H -0.207 1.207 27 C -0.154 4.154 28 C -0.143 4.143 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.257 0.743 33 H 0.168 0.832 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.534 16.338 27.456 33.641 hybrid contribution -0.316 -1.310 -1.209 1.810 sum -10.850 15.028 26.247 32.132 Atomic orbital electron populations 1.22518 0.89868 1.04681 1.06283 1.20948 0.97498 0.97506 0.82450 0.84349 1.55384 1.84328 1.20618 1.26398 1.04574 0.78330 0.73515 0.72615 1.30410 1.19775 1.15169 1.14646 1.93572 1.81673 1.60525 1.63735 1.93568 1.64245 1.61459 1.79911 1.21242 0.79496 0.84439 0.85871 1.90727 1.39498 1.28458 1.87113 1.45861 1.53301 1.32180 1.04276 1.20835 0.97254 0.92828 0.84520 0.92358 1.21739 0.99820 0.97045 0.96216 1.22040 0.99533 0.99112 0.95829 1.20502 0.96685 0.91111 0.85228 0.93076 1.42702 1.07858 1.60871 1.26564 1.19596 0.91505 1.22825 1.02810 0.90553 1.25578 0.97662 1.03299 1.00781 1.69817 1.14407 1.49686 1.28433 0.85230 0.77980 0.78626 0.78061 1.20051 1.22461 1.20670 1.21641 0.98611 0.97125 0.97996 1.21643 1.03737 0.97173 0.91767 0.91620 0.87941 0.88163 0.74322 0.83205 0.82182 0.82652 0.74102 0.93364 0.89960 0.94138 0.94778 0.79850 0.94186 0.91475 0.93359 0.88803 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.42 9.38 71.98 0.67 0.26 16 2 C 0.13 1.31 3.22 44.25 0.14 1.45 16 3 H 0.14 0.84 7.48 -2.38 -0.02 0.82 16 4 N -1.11 -14.90 5.15 -172.52 -0.89 -15.79 16 5 S 2.61 33.46 6.08 -56.49 -0.34 33.11 16 6 C -0.65 0.10 10.04 113.37 1.14 1.24 16 7 O -1.00 -22.31 18.08 -127.65 -2.31 -24.61 16 8 O -1.00 -20.81 17.39 -127.65 -2.22 -23.03 16 9 C 0.50 9.87 7.18 87.66 0.63 10.50 16 10 O -0.58 -17.75 15.65 -3.05 -0.05 -17.80 16 11 N -0.70 -10.84 4.97 -442.54 -2.20 -13.04 16 12 C 0.15 3.45 2.46 44.99 0.11 3.56 16 13 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 14 C -0.11 -2.89 5.50 30.60 0.17 -2.72 16 15 C -0.12 -4.47 5.50 30.60 0.17 -4.30 16 16 C 0.17 6.53 2.77 44.99 0.12 6.65 16 17 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 18 N -0.74 -37.42 5.12 -322.94 -1.65 -39.08 16 19 C -0.24 -13.05 9.93 84.03 0.83 -12.22 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 22 N -0.97 -60.41 13.06 21.65 0.28 -60.12 16 23 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.11 -3.46 5.39 30.58 0.16 -3.30 16 28 C -0.10 -2.10 5.39 30.58 0.16 -1.94 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.10 -0.38 5.78 -2.39 -0.01 -0.39 16 31 H 0.10 -0.14 7.56 -2.39 -0.02 -0.16 16 32 H 0.42 6.90 8.17 -96.75 -0.79 6.11 16 33 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.16 -0.86 6.77 -2.39 -0.02 -0.88 16 35 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.42 2.78 8.02 -92.71 -0.74 2.04 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 42 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -89.92 381.57 -3.81 -93.73 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -1.25 Total: 23.28 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.79 Total: -5.06 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -4.46 Total: -128.03 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -4.58 Total: -65.45 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.34 Total: 33.11 kcal Total: -89.92 -3.81 -93.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714310917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.169 kcal (2) G-P(sol) polarization free energy of solvation -89.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds