Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47101 * 2 1 4 4 C 1.34779 * 119.99805 * 90.00046 * 3 2 1 5 5 O 1.21282 * 119.99989 * 174.97716 * 4 3 2 6 6 C 1.50702 * 120.00099 * 354.97808 * 4 3 2 7 7 C 1.52996 * 109.47225 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47461 * 179.97438 * 7 6 4 9 9 S 1.81400 * 109.47430 * 180.02562 * 8 7 6 10 10 N 1.65600 * 104.44958 * 180.02562 * 9 8 7 11 11 O 1.42107 * 110.53935 * 291.62501 * 9 8 7 12 12 O 1.42091 * 110.54225 * 68.37246 * 9 8 7 13 13 C 1.46497 * 119.99975 * 269.99854 * 3 2 1 14 14 H 1.09005 * 110.63782 * 178.17648 * 13 3 2 15 15 C 1.55159 * 110.72039 * 54.83822 * 13 3 2 16 16 C 1.54901 * 101.58173 * 277.13791 * 15 13 3 17 17 N 1.47424 * 104.83240 * 322.99039 * 16 15 13 18 18 C 1.36941 * 125.64747 * 204.09224 * 17 16 15 19 19 H 1.08005 * 119.99898 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.00073 * 0.04652 * 18 17 16 21 21 N 1.31617 * 119.99683 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00008 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47145 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47152 * 119.99644 * 22 20 18 25 25 H 1.48502 * 109.47029 * 239.99830 * 22 20 18 26 26 C 1.47021 * 108.70380 * 24.12852 * 17 16 15 27 27 H 1.09001 * 109.47048 * 300.00031 * 1 2 3 28 28 H 1.08996 * 109.47036 * 60.00108 * 1 2 3 29 29 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47048 * 239.99969 * 2 1 3 31 31 H 1.09003 * 109.47228 * 120.00253 * 2 1 3 32 32 H 1.09008 * 109.46876 * 60.00002 * 6 4 3 33 33 H 1.08993 * 109.46934 * 299.99848 * 6 4 3 34 34 H 1.08999 * 109.47216 * 59.99866 * 7 6 4 35 35 H 1.09002 * 109.47429 * 300.00140 * 7 6 4 36 36 H 1.09002 * 109.46996 * 300.00507 * 8 7 6 37 37 H 1.09008 * 109.46674 * 60.00321 * 8 7 6 38 38 H 0.96996 * 119.99857 * 0.02562 * 10 9 8 39 39 H 0.96999 * 119.99917 * 179.97438 * 10 9 8 40 40 H 1.09003 * 110.99939 * 35.21582 * 15 13 3 41 41 H 1.09002 * 111.00176 * 159.06009 * 15 13 3 42 42 H 1.09005 * 110.36558 * 204.15348 * 16 15 13 43 43 H 1.09003 * 110.46134 * 81.87667 * 16 15 13 44 44 H 0.97004 * 119.99650 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.88190 * 239.52325 * 26 17 16 46 46 H 1.08998 * 110.00825 * 118.42978 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7328 3.1260 1.1693 6 6 1.8856 1.3483 2.4698 7 6 2.2403 2.2763 3.6333 8 6 1.8769 1.5981 4.9558 9 16 2.2968 2.6988 6.3352 10 7 1.8578 1.8512 7.6885 11 8 3.7063 2.8375 6.4511 12 8 1.4457 3.8365 6.3422 13 6 2.2625 2.0718 -1.2687 14 1 2.5903 3.0962 -1.0916 15 6 0.9942 2.0436 -2.1620 16 6 1.1103 0.6476 -2.8230 17 7 2.5533 0.4615 -3.0611 18 6 3.1068 -0.3618 -4.0050 19 1 4.1805 -0.4287 -4.1004 20 6 2.2878 -1.1101 -4.8395 21 7 0.9793 -1.0285 -4.7231 22 14 3.0428 -2.2326 -6.1276 23 1 4.5234 -2.1439 -6.0549 24 1 2.6173 -3.6327 -5.8747 25 1 2.5880 -1.8131 -7.4776 26 6 3.2996 1.3056 -2.1166 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.4436 0.4167 2.5654 33 1 0.8168 1.1351 2.4875 34 1 1.6827 3.2080 3.5380 35 1 3.3092 2.4891 3.6155 36 1 0.8079 1.3856 4.9733 37 1 2.4342 0.6662 5.0514 38 1 1.4714 0.9658 7.6020 39 1 1.9877 2.2400 8.5676 40 1 0.0896 2.1162 -1.5583 41 1 1.0265 2.8347 -2.9113 42 1 0.5645 0.6279 -3.7664 43 1 0.7340 -0.1244 -2.1517 44 1 0.4070 -1.5517 -5.3060 45 1 3.9248 2.0110 -2.6641 46 1 3.9201 0.6842 -1.4710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732187546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = -76.479674 kcal Electronic energy + Delta-G solvation = -27580.912886 eV Core-core repulsion = 23633.898174 eV Total energy + Delta-G solvation = -3947.014712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.18296 -37.74914 -37.30039 -36.22567 -34.97790 -34.78125 -33.59367 -32.31236 -30.56626 -29.53354 -28.64375 -26.83979 -24.60848 -23.41921 -22.63489 -20.48309 -20.19775 -19.78340 -18.63131 -17.99938 -17.64036 -17.08310 -17.04393 -16.64751 -16.02106 -15.71704 -15.42861 -14.76555 -14.55832 -14.18964 -13.84178 -13.62511 -13.34008 -13.03603 -12.75204 -12.46734 -12.43311 -12.37638 -12.24854 -12.21572 -12.16683 -11.94895 -11.67707 -11.50350 -11.31826 -11.09284 -11.02076 -10.93455 -10.91082 -10.84858 -10.47105 -10.29134 -10.13882 -9.89596 -9.60022 -9.44546 -8.69698 -8.32686 -6.89071 -5.71958 -3.13386 -0.13824 2.49687 2.76164 3.14224 3.33614 3.35256 3.41705 3.43394 3.90205 4.06924 4.43914 4.52180 4.57839 4.77948 4.93242 5.08002 5.12706 5.33535 5.37204 5.42388 5.45900 5.54127 5.55009 5.60323 5.70256 5.72863 5.76621 5.87187 5.99618 6.12328 6.27894 6.36654 6.41636 6.58115 6.59288 6.61997 6.70540 7.01656 7.43291 7.57756 7.69891 7.79464 8.29560 8.35555 9.15964 9.76333 10.40684 11.31561 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.002270 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.990283 B =12334.524460 C =12402.153913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 N -0.589 5.589 4 C 0.510 3.490 5 O -0.550 6.550 6 C -0.132 4.132 7 C -0.098 4.098 8 C -0.620 4.620 9 S 2.614 3.386 10 N -1.254 6.254 11 O -0.961 6.961 12 O -0.962 6.962 13 C 0.125 3.875 14 H 0.099 0.901 15 C -0.158 4.158 16 C 0.139 3.861 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.127 3.873 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.412 0.588 39 H 0.419 0.581 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.032 0.968 44 H 0.251 0.749 45 H 0.032 0.968 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 0.870 21.746 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 N -0.321 5.321 4 C 0.298 3.702 5 O -0.429 6.429 6 C -0.173 4.173 7 C -0.137 4.137 8 C -0.750 4.750 9 S 2.706 3.294 10 N -0.927 5.927 11 O -0.951 6.951 12 O -0.951 6.951 13 C 0.022 3.978 14 H 0.117 0.883 15 C -0.197 4.197 16 C 0.014 3.986 17 N -0.330 5.330 18 C -0.349 4.349 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.000 4.000 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.237 0.763 39 H 0.249 0.751 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.556 2.302 21.399 21.673 hybrid contribution -0.109 -1.709 -0.552 1.799 sum -2.665 0.593 20.847 21.025 Atomic orbital electron populations 1.22443 0.95954 1.02421 1.02571 1.21845 0.94601 0.82195 1.04266 1.47949 1.64340 1.14296 1.05486 1.20524 0.78229 0.86020 0.85447 1.90681 1.44432 1.20334 1.87449 1.21667 1.03953 0.99860 0.91848 1.21064 1.04148 0.98948 0.89546 1.30426 1.12542 1.16452 1.15604 1.04754 0.74741 0.74825 0.75102 1.53182 1.83145 1.32276 1.24076 1.93627 1.31342 1.85150 1.84943 1.93623 1.68426 1.47369 1.85666 1.22137 0.97002 0.96451 0.82236 0.88298 1.23436 0.95915 1.02087 0.98307 1.22279 0.86082 0.89332 1.00871 1.44550 1.01538 1.49166 1.37697 1.19122 0.91534 1.15935 1.08333 0.90496 1.24766 0.95518 1.00434 0.99871 1.69805 1.01801 1.44342 1.41080 0.86012 0.78113 0.80136 0.81313 1.20578 1.21800 1.21773 1.21630 0.93535 0.93383 0.91445 0.93556 0.90294 0.91717 0.87151 0.91557 0.88483 0.88346 0.89240 0.89207 0.84467 0.84441 0.76255 0.75137 0.91730 0.91161 0.87838 0.95070 0.93811 0.95025 0.95589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.06 37.16 0.34 -1.90 16 2 C 0.09 1.33 4.97 -4.04 -0.02 1.31 16 3 N -0.59 -9.17 2.45 -164.02 -0.40 -9.57 16 4 C 0.51 7.55 7.66 -10.98 -0.08 7.47 16 5 O -0.55 -9.99 15.37 5.56 0.09 -9.91 16 6 C -0.13 -1.30 4.37 -27.88 -0.12 -1.42 16 7 C -0.10 -0.91 4.51 -26.73 -0.12 -1.03 16 8 C -0.62 -3.17 6.09 37.16 0.23 -2.95 16 9 S 2.61 19.69 5.97 -107.50 -0.64 19.04 16 10 N -1.25 -4.71 9.43 60.35 0.57 -4.14 16 11 O -0.96 -11.35 18.10 -57.54 -1.04 -12.39 16 12 O -0.96 -11.27 18.10 -57.54 -1.04 -12.31 16 13 C 0.13 2.25 3.58 -66.10 -0.24 2.02 16 14 H 0.10 1.82 7.01 -51.93 -0.36 1.45 16 15 C -0.16 -2.90 6.09 -24.59 -0.15 -3.05 16 16 C 0.14 3.07 4.64 -2.53 -0.01 3.06 16 17 N -0.60 -14.50 2.97 -170.08 -0.51 -15.00 16 18 C -0.22 -5.89 10.27 -15.06 -0.15 -6.04 16 19 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -25.46 10.09 55.49 0.56 -24.90 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.13 2.62 6.25 -3.07 -0.02 2.60 16 27 H 0.05 0.49 6.94 -51.93 -0.36 0.13 16 28 H 0.08 1.17 4.34 -51.93 -0.23 0.95 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.11 2.00 5.18 -51.93 -0.27 1.73 16 31 H 0.07 0.74 6.48 -51.93 -0.34 0.41 16 32 H 0.10 0.77 7.25 -51.92 -0.38 0.39 16 33 H 0.10 0.78 6.94 -51.93 -0.36 0.41 16 34 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.14 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.14 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.41 0.24 8.83 -34.47 -0.30 -0.06 16 39 H 0.42 1.33 8.96 -34.47 -0.31 1.02 16 40 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.10 2.68 5.87 -51.93 -0.31 2.37 16 43 H 0.03 0.69 4.04 -51.93 -0.21 0.48 16 44 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -37.05 365.73 -9.05 -46.10 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.67 Total: 1.52 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.45 Total: -0.32 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.22 Total: -53.62 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -2.00 Total: -34.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 19.69 SS G_CDS: -0.64 Total: 19.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.05 -9.05 -46.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732187546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.375 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds