Wall clock time and date at job start Tue Mar 31 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47101 * 2 1 4 4 C 1.34779 * 119.99805 * 90.00046 * 3 2 1 5 5 O 1.21282 * 119.99989 * 174.97716 * 4 3 2 6 6 C 1.50702 * 120.00099 * 354.97808 * 4 3 2 7 7 C 1.52996 * 109.47225 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47461 * 179.97438 * 7 6 4 9 9 S 1.81400 * 109.47430 * 180.02562 * 8 7 6 10 10 N 1.65600 * 104.44958 * 180.02562 * 9 8 7 11 11 O 1.42107 * 110.53935 * 291.62501 * 9 8 7 12 12 O 1.42091 * 110.54225 * 68.37246 * 9 8 7 13 13 C 1.46497 * 119.99975 * 269.99854 * 3 2 1 14 14 H 1.09005 * 110.63782 * 178.17648 * 13 3 2 15 15 C 1.55159 * 110.72039 * 54.83822 * 13 3 2 16 16 C 1.54901 * 101.58173 * 277.13791 * 15 13 3 17 17 N 1.47424 * 104.83240 * 322.99039 * 16 15 13 18 18 C 1.36941 * 125.64747 * 204.09224 * 17 16 15 19 19 H 1.08005 * 119.99898 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.00073 * 0.04652 * 18 17 16 21 21 N 1.31617 * 119.99683 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00008 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47145 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47152 * 119.99644 * 22 20 18 25 25 H 1.48502 * 109.47029 * 239.99830 * 22 20 18 26 26 C 1.47021 * 108.70380 * 24.12852 * 17 16 15 27 27 H 1.09001 * 109.47048 * 300.00031 * 1 2 3 28 28 H 1.08996 * 109.47036 * 60.00108 * 1 2 3 29 29 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47048 * 239.99969 * 2 1 3 31 31 H 1.09003 * 109.47228 * 120.00253 * 2 1 3 32 32 H 1.09008 * 109.46876 * 60.00002 * 6 4 3 33 33 H 1.08993 * 109.46934 * 299.99848 * 6 4 3 34 34 H 1.08999 * 109.47216 * 59.99866 * 7 6 4 35 35 H 1.09002 * 109.47429 * 300.00140 * 7 6 4 36 36 H 1.09002 * 109.46996 * 300.00507 * 8 7 6 37 37 H 1.09008 * 109.46674 * 60.00321 * 8 7 6 38 38 H 0.96996 * 119.99857 * 0.02562 * 10 9 8 39 39 H 0.96999 * 119.99917 * 179.97438 * 10 9 8 40 40 H 1.09003 * 110.99939 * 35.21582 * 15 13 3 41 41 H 1.09002 * 111.00176 * 159.06009 * 15 13 3 42 42 H 1.09005 * 110.36558 * 204.15348 * 16 15 13 43 43 H 1.09003 * 110.46134 * 81.87667 * 16 15 13 44 44 H 0.97004 * 119.99650 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.88190 * 239.52325 * 26 17 16 46 46 H 1.08998 * 110.00825 * 118.42978 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7328 3.1260 1.1693 6 6 1.8856 1.3483 2.4698 7 6 2.2403 2.2763 3.6333 8 6 1.8769 1.5981 4.9558 9 16 2.2968 2.6988 6.3352 10 7 1.8578 1.8512 7.6885 11 8 3.7063 2.8375 6.4511 12 8 1.4457 3.8365 6.3422 13 6 2.2625 2.0718 -1.2687 14 1 2.5903 3.0962 -1.0916 15 6 0.9942 2.0436 -2.1620 16 6 1.1103 0.6476 -2.8230 17 7 2.5533 0.4615 -3.0611 18 6 3.1068 -0.3618 -4.0050 19 1 4.1805 -0.4287 -4.1004 20 6 2.2878 -1.1101 -4.8395 21 7 0.9793 -1.0285 -4.7231 22 14 3.0428 -2.2326 -6.1276 23 1 4.5234 -2.1439 -6.0549 24 1 2.6173 -3.6327 -5.8747 25 1 2.5880 -1.8131 -7.4776 26 6 3.2996 1.3056 -2.1166 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.4436 0.4167 2.5654 33 1 0.8168 1.1351 2.4875 34 1 1.6827 3.2080 3.5380 35 1 3.3092 2.4891 3.6155 36 1 0.8079 1.3856 4.9733 37 1 2.4342 0.6662 5.0514 38 1 1.4714 0.9658 7.6020 39 1 1.9877 2.2400 8.5676 40 1 0.0896 2.1162 -1.5583 41 1 1.0265 2.8347 -2.9113 42 1 0.5645 0.6279 -3.7664 43 1 0.7340 -0.1244 -2.1517 44 1 0.4070 -1.5517 -5.3060 45 1 3.9248 2.0110 -2.6641 46 1 3.9201 0.6842 -1.4710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732187546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:27 Heat of formation + Delta-G solvation = -106.425629 kcal Electronic energy + Delta-G solvation = -27582.211440 eV Core-core repulsion = 23633.898174 eV Total energy + Delta-G solvation = -3948.313266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.43847 -39.19392 -38.02277 -36.94487 -36.28094 -35.70704 -34.08016 -33.96857 -31.83190 -31.17346 -29.61217 -28.33216 -26.44215 -24.38512 -23.64393 -22.03251 -21.68242 -20.34260 -19.82659 -18.92994 -18.69294 -18.30236 -18.01167 -17.31783 -17.12711 -16.71627 -16.56046 -16.18693 -15.64155 -15.58806 -15.35922 -14.73494 -14.45240 -14.24483 -13.81387 -13.58507 -13.54425 -13.33500 -13.23075 -13.12387 -13.10652 -13.03126 -12.99971 -12.91034 -12.85186 -12.67669 -12.23368 -12.01714 -11.98644 -11.91789 -11.76245 -11.67623 -11.50980 -11.38743 -11.21383 -10.73699 -10.62593 -9.62977 -8.83976 -7.75022 -5.18127 -0.68689 1.47755 1.49422 1.58600 1.64356 1.97039 2.08549 2.50625 2.76025 3.34950 3.37328 3.47851 3.70280 3.84458 3.89095 3.91908 3.95048 4.09501 4.16058 4.32320 4.37168 4.49812 4.58509 4.65150 4.67494 4.72616 4.73375 4.87047 4.91935 4.97824 5.03274 5.04778 5.10514 5.24872 5.34361 5.48259 5.49701 5.66450 5.74611 5.86704 6.35048 6.43846 6.53573 7.14441 7.19973 7.79909 8.43731 9.25883 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.002270 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.990283 B =12334.524460 C =12402.153913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.591 5.591 4 C 0.503 3.497 5 O -0.591 6.591 6 C -0.125 4.125 7 C -0.109 4.109 8 C -0.594 4.594 9 S 2.618 3.382 10 N -1.237 6.237 11 O -1.014 7.014 12 O -1.012 7.012 13 C 0.137 3.863 14 H 0.095 0.905 15 C -0.143 4.143 16 C 0.147 3.853 17 N -0.619 5.619 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.059 4.059 21 N -0.941 5.941 22 Si 0.975 3.025 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.295 1.295 26 C 0.128 3.872 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.429 0.571 39 H 0.423 0.577 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.247 0.753 45 H 0.023 0.977 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -1.036 23.735 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.323 5.323 4 C 0.294 3.706 5 O -0.472 6.472 6 C -0.165 4.165 7 C -0.149 4.149 8 C -0.727 4.727 9 S 2.714 3.286 10 N -0.915 5.915 11 O -1.003 7.003 12 O -1.001 7.001 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.183 4.183 16 C 0.023 3.977 17 N -0.345 5.345 18 C -0.365 4.365 19 H 0.091 0.909 20 C -0.252 4.252 21 N -0.591 5.591 22 Si 0.804 3.196 23 H -0.198 1.198 24 H -0.216 1.216 25 H -0.222 1.222 26 C 0.002 3.998 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.193 0.807 38 H 0.259 0.741 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.483 0.400 23.445 23.706 hybrid contribution 0.195 -1.138 -1.174 1.647 sum -3.288 -0.738 22.271 22.524 Atomic orbital electron populations 1.22372 0.94619 1.03151 1.02728 1.21878 0.95644 0.81063 1.04109 1.48004 1.64578 1.14866 1.04813 1.21494 0.76932 0.85608 0.86572 1.90671 1.46113 1.22380 1.88028 1.21772 1.06289 1.00199 0.88252 1.21088 1.03075 0.99055 0.91681 1.30192 1.15657 1.16029 1.10811 1.04198 0.73262 0.74956 0.76200 1.52736 1.82797 1.32907 1.23084 1.93570 1.34267 1.86320 1.86113 1.93567 1.68990 1.50824 1.86765 1.21803 0.95610 0.96082 0.83301 0.88707 1.23277 0.97203 0.99496 0.98285 1.22078 0.84720 0.91621 0.99312 1.44740 1.02718 1.49181 1.37881 1.19380 0.91641 1.16416 1.09063 0.90855 1.25483 0.96033 1.01960 1.01715 1.70035 1.02613 1.44850 1.41611 0.85066 0.77714 0.78231 0.78610 1.19762 1.21634 1.22179 1.21675 0.94072 0.92898 0.91193 0.90473 0.92954 0.90724 0.91377 0.87622 0.85484 0.85146 0.90782 0.91000 0.80573 0.80713 0.74098 0.74617 0.89503 0.91683 0.91717 0.94583 0.94318 0.95858 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 9.06 71.98 0.65 -3.13 16 2 C 0.10 2.43 4.97 86.38 0.43 2.86 16 3 N -0.59 -17.28 2.45 -791.24 -1.94 -19.22 16 4 C 0.50 13.73 7.66 87.66 0.67 14.40 16 5 O -0.59 -21.07 15.37 -3.04 -0.05 -21.12 16 6 C -0.12 -1.87 4.37 29.85 0.13 -1.74 16 7 C -0.11 -1.72 4.51 30.59 0.14 -1.58 16 8 C -0.59 -3.42 6.09 71.98 0.44 -2.98 16 9 S 2.62 35.61 5.97 -56.49 -0.34 35.27 16 10 N -1.24 -6.20 9.43 37.02 0.35 -5.86 16 11 O -1.01 -23.76 18.10 -127.65 -2.31 -26.07 16 12 O -1.01 -23.43 18.10 -127.65 -2.31 -25.74 16 13 C 0.14 4.88 3.58 46.18 0.17 5.04 16 14 H 0.09 3.49 7.01 -2.38 -0.02 3.48 16 15 C -0.14 -5.24 6.09 31.98 0.19 -5.04 16 16 C 0.15 6.61 4.64 86.85 0.40 7.01 16 17 N -0.62 -30.35 2.97 -692.00 -2.06 -32.40 16 18 C -0.24 -12.79 10.27 84.03 0.86 -11.93 16 19 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 21 N -0.94 -53.00 10.09 21.65 0.22 -52.78 16 22 Si 0.97 44.33 29.55 68.60 2.03 46.35 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 C 0.13 5.36 6.25 86.73 0.54 5.91 16 27 H 0.08 1.23 6.94 -2.39 -0.02 1.22 16 28 H 0.05 1.45 4.34 -2.39 -0.01 1.44 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.39 5.18 -2.39 -0.01 2.38 16 31 H 0.11 1.86 6.48 -2.39 -0.02 1.85 16 32 H 0.13 1.22 7.25 -2.38 -0.02 1.20 16 33 H 0.13 1.19 6.94 -2.39 -0.02 1.17 16 34 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 35 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.18 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.18 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.43 -1.13 8.83 -96.75 -0.85 -1.98 16 39 H 0.42 1.94 8.96 -96.75 -0.87 1.07 16 40 H 0.09 2.78 6.45 -2.39 -0.02 2.76 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.06 3.45 5.87 -2.38 -0.01 3.44 16 43 H 0.04 1.60 4.04 -2.39 -0.01 1.59 16 44 H 0.25 13.54 8.31 -92.71 -0.77 12.76 16 45 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 Total: -1.00 -85.34 365.73 -2.00 -87.35 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -0.69 Total: 8.11 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.09 Total: 6.09 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -3.43 Total: -110.26 kcal Atomic # 8 Polarization: -68.25 SS G_CDS: -4.67 Total: -72.92 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 35.61 SS G_CDS: -0.34 Total: 35.27 kcal Total: -85.34 -2.00 -87.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732187546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.079 kcal (2) G-P(sol) polarization free energy of solvation -85.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds