Wall clock time and date at job start Tue Mar 31 2020 17:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 N 1.46499 * 109.47069 * 240.00309 * 2 1 3 5 5 S 1.65597 * 120.00380 * 95.00005 * 4 2 1 6 6 C 1.81396 * 104.45240 * 64.99603 * 5 4 2 7 7 O 1.42107 * 104.27336 * 308.92285 * 5 4 2 8 8 O 1.42096 * 104.27729 * 181.07268 * 5 4 2 9 9 C 1.50702 * 109.47344 * 119.99860 * 2 1 3 10 10 O 1.21275 * 119.99828 * 119.99876 * 9 2 1 11 11 N 1.34773 * 119.99701 * 300.00350 * 9 2 1 12 12 C 1.46507 * 119.99771 * 180.02562 * 11 9 2 13 13 H 1.09002 * 109.20022 * 35.63838 * 12 11 9 14 14 C 1.50130 * 109.20895 * 154.99859 * 12 11 9 15 15 C 1.52529 * 105.41496 * 218.02817 * 14 12 11 16 16 C 1.46240 * 114.27306 * 270.59522 * 15 14 12 17 17 N 1.50163 * 107.53381 * 58.40786 * 16 15 14 18 18 C 1.36938 * 120.53980 * 109.57030 * 17 16 15 19 19 H 1.08001 * 119.99347 * 320.22634 * 18 17 16 20 20 C 1.38804 * 120.00307 * 140.22872 * 18 17 16 21 21 N 1.31625 * 119.99878 * 156.34107 * 20 18 17 22 22 Si 1.86791 * 120.00208 * 336.34262 * 20 18 17 23 23 H 1.48503 * 109.47521 * 95.57480 * 22 20 18 24 24 H 1.48509 * 109.47358 * 215.57300 * 22 20 18 25 25 H 1.48501 * 109.47297 * 335.57468 * 22 20 18 26 26 C 1.43433 * 118.92675 * 289.58262 * 17 16 15 27 27 C 1.54838 * 109.20744 * 276.32063 * 12 11 9 28 28 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47226 * 300.00155 * 1 2 3 30 30 H 1.09002 * 109.47384 * 60.00027 * 1 2 3 31 31 H 0.97003 * 119.99832 * 274.99747 * 4 2 1 32 32 H 1.09003 * 109.47039 * 300.00444 * 6 5 4 33 33 H 1.08995 * 109.47307 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.47207 * 60.00102 * 6 5 4 35 35 H 0.97004 * 120.00462 * 359.97438 * 11 9 2 36 36 H 1.09005 * 110.25000 * 336.99617 * 14 12 11 37 37 H 1.08996 * 110.24646 * 98.90682 * 14 12 11 38 38 H 1.08993 * 108.52408 * 31.83353 * 15 14 12 39 39 H 1.08994 * 108.51941 * 149.35651 * 15 14 12 40 40 H 1.09005 * 109.84674 * 177.91741 * 16 15 14 41 41 H 1.09004 * 109.84340 * 298.83223 * 16 15 14 42 42 H 0.97006 * 120.00111 * 179.97438 * 21 20 18 43 43 H 1.08991 * 108.16384 * 213.28687 * 26 17 16 44 44 H 1.08996 * 108.16050 * 330.06977 * 26 17 16 45 45 H 1.08998 * 109.36241 * 320.99429 * 27 12 11 46 46 H 1.08999 * 109.36017 * 80.58228 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.4121 0.1772 -2.5505 6 6 3.8312 1.1873 -2.0442 7 8 1.2749 0.9966 -2.7846 8 8 2.8121 -0.8075 -3.4936 9 6 2.0324 -0.7104 1.2305 10 8 2.7296 -1.6964 1.1192 11 7 1.7067 -0.2499 2.4545 12 6 2.1956 -0.9402 3.6507 13 1 3.1993 -1.3201 3.4603 14 6 2.2435 0.0297 4.7957 15 6 3.5035 -0.3279 5.5775 16 6 3.2978 -1.3275 6.6248 17 7 2.7509 -2.5631 5.9697 18 6 3.5190 -3.6917 5.8621 19 1 4.5687 -3.6094 5.6213 20 6 2.9487 -4.9412 6.0625 21 7 3.5021 -6.0102 5.5302 22 14 1.3959 -5.1056 7.0876 23 1 0.2106 -5.1139 6.1929 24 1 1.4433 -6.3743 7.8581 25 1 1.2990 -3.9594 8.0268 26 6 1.4111 -2.5421 5.4583 27 6 1.2553 -2.1271 3.9740 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.1109 -1.6561 -1.1949 32 1 3.5398 1.8343 -1.2167 33 1 4.1604 1.7986 -2.8844 34 1 4.6459 0.5363 -1.7268 35 1 1.1493 0.5390 2.5435 36 1 2.3087 1.0516 4.4221 37 1 1.3610 -0.0857 5.4249 38 1 4.2487 -0.7071 4.8784 39 1 3.8949 0.5796 6.0370 40 1 4.2466 -1.5553 7.1106 41 1 2.5865 -0.9518 7.3604 42 1 3.1038 -6.8835 5.6705 43 1 0.9857 -3.5383 5.5788 44 1 0.8268 -1.8500 6.0646 45 1 0.2228 -1.8312 3.7881 46 1 1.5075 -2.9726 3.3340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733763314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:43 Heat of formation + Delta-G solvation = -75.571439 kcal Electronic energy + Delta-G solvation = -28137.498374 eV Core-core repulsion = 24190.523046 eV Total energy + Delta-G solvation = -3946.975328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15317 -38.23304 -37.38006 -36.24545 -35.64779 -34.84313 -32.98124 -31.39013 -31.05740 -29.87629 -29.61100 -26.42057 -24.96318 -23.90412 -23.05354 -20.67805 -20.19849 -19.83773 -19.51311 -18.31492 -17.30861 -16.60733 -16.53928 -16.21804 -15.97171 -15.43922 -15.13870 -14.91289 -14.44701 -14.20168 -13.84049 -13.65787 -13.51692 -13.37592 -13.28309 -13.01977 -12.70263 -12.63166 -12.38226 -12.27071 -12.06381 -11.96537 -11.94937 -11.88668 -11.82829 -11.39761 -10.99117 -10.88438 -10.56075 -10.47722 -10.30085 -10.14210 -10.06750 -9.69647 -9.59040 -9.48450 -8.82076 -8.43128 -6.76048 -5.98910 -3.42428 -0.04163 2.31752 2.61332 3.19642 3.32499 3.46684 3.51999 3.54079 3.87406 4.28675 4.41285 4.53587 4.59489 4.63045 4.76894 4.85772 5.00476 5.11518 5.27244 5.31826 5.36259 5.42183 5.47206 5.66683 5.77810 5.85071 5.93624 5.93840 6.08362 6.17562 6.26465 6.31901 6.52473 6.58909 6.66947 6.73521 6.76399 6.84296 6.88243 6.96468 7.57814 8.09702 8.27079 8.38211 9.01791 9.72207 10.15787 11.16395 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002977 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.663954 B = 9401.787209 C = 9835.139980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.135 3.865 3 H 0.104 0.896 4 N -1.100 6.100 5 S 2.618 3.382 6 C -0.676 4.676 7 O -0.956 6.956 8 O -0.955 6.955 9 C 0.500 3.500 10 O -0.518 6.518 11 N -0.725 5.725 12 C 0.154 3.846 13 H 0.096 0.904 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.135 3.865 17 N -0.600 5.600 18 C -0.270 4.270 19 H 0.075 0.925 20 C 0.041 3.959 21 N -0.894 5.894 22 Si 0.876 3.124 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.153 3.847 27 C -0.148 4.148 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.428 0.572 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.394 0.606 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.031 0.969 42 H 0.263 0.737 43 H 0.043 0.957 44 H 0.029 0.971 45 H 0.050 0.950 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 19.594 -10.168 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 H 0.121 0.879 4 N -0.861 5.861 5 S 2.709 3.291 6 C -0.826 4.826 7 O -0.946 6.946 8 O -0.946 6.946 9 C 0.283 3.717 10 O -0.392 6.392 11 N -0.377 5.377 12 C 0.051 3.949 13 H 0.114 0.886 14 C -0.157 4.157 15 C -0.169 4.169 16 C 0.011 3.989 17 N -0.323 5.323 18 C -0.398 4.398 19 H 0.092 0.908 20 C -0.160 4.160 21 N -0.534 5.534 22 Si 0.706 3.294 23 H -0.214 1.214 24 H -0.229 1.229 25 H -0.195 1.195 26 C 0.025 3.975 27 C -0.190 4.190 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.266 0.734 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.392 18.810 -11.071 22.264 hybrid contribution -0.597 -0.059 1.062 1.220 sum -4.989 18.751 -10.010 21.833 Atomic orbital electron populations 1.22278 0.92390 1.04086 1.03906 1.20634 0.96421 0.95905 0.84734 0.87872 1.55461 1.81567 1.20639 1.28390 1.04679 0.76377 0.74943 0.73094 1.30558 1.22319 1.16786 1.12912 1.93617 1.46345 1.70876 1.83777 1.93636 1.84459 1.57588 1.58869 1.20581 0.80965 0.85374 0.84776 1.90788 1.36852 1.25349 1.86215 1.46449 1.53474 1.31669 1.06063 1.21244 0.99877 0.91873 0.81878 0.88617 1.21306 0.99931 0.97374 0.97135 1.20860 0.97094 0.98982 1.00003 1.20452 0.98437 0.87075 0.92935 1.44189 1.12992 1.10826 1.64283 1.18685 0.94878 0.82587 1.43661 0.90786 1.25526 0.97554 0.95396 0.97531 1.69909 1.41764 0.98995 1.42781 0.86913 0.83954 0.76705 0.81791 1.21440 1.22928 1.19464 1.20619 0.87379 0.98641 0.90891 1.23211 0.96905 0.97687 1.01171 0.91154 0.90959 0.89762 0.73416 0.85588 0.85285 0.84851 0.77204 0.92000 0.90856 0.91692 0.93382 0.91396 0.95091 0.92709 0.93881 0.95280 0.93110 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.41 37.16 0.35 -0.99 16 2 C 0.13 1.19 3.09 -69.08 -0.21 0.98 16 3 H 0.10 0.54 7.15 -51.93 -0.37 0.17 16 4 N -1.10 -10.47 5.15 -5.88 -0.03 -10.50 16 5 S 2.62 22.50 6.02 -107.50 -0.65 21.86 16 6 C -0.68 -3.66 10.78 101.05 1.09 -2.57 16 7 O -0.96 -10.31 17.11 -57.54 -0.98 -11.29 16 8 O -0.96 -12.00 18.08 -57.54 -1.04 -13.04 16 9 C 0.50 6.40 7.17 -10.99 -0.08 6.32 16 10 O -0.52 -9.23 15.66 5.56 0.09 -9.15 16 11 N -0.72 -8.33 4.87 -54.25 -0.26 -8.60 16 12 C 0.15 2.38 2.22 -68.39 -0.15 2.22 16 13 H 0.10 1.86 6.27 -51.93 -0.33 1.54 16 14 C -0.12 -1.55 5.33 -28.40 -0.15 -1.70 16 15 C -0.13 -1.94 5.20 -30.19 -0.16 -2.10 16 16 C 0.13 2.45 6.11 -5.21 -0.03 2.42 16 17 N -0.60 -13.60 2.14 -175.09 -0.37 -13.97 16 18 C -0.27 -7.42 9.92 -15.06 -0.15 -7.57 16 19 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 20 C 0.04 1.18 5.28 -17.43 -0.09 1.09 16 21 N -0.89 -27.43 13.97 55.49 0.78 -26.66 16 22 Si 0.88 22.11 25.26 -169.99 -4.29 17.82 16 23 H -0.29 -7.09 6.73 56.52 0.38 -6.71 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.19 4.22 -4.66 -0.02 3.17 16 27 C -0.15 -2.71 5.98 -24.76 -0.15 -2.85 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 30 H 0.08 0.68 7.42 -51.93 -0.39 0.30 16 31 H 0.43 4.57 8.17 -34.47 -0.28 4.29 16 32 H 0.13 0.47 7.44 -51.92 -0.39 0.09 16 33 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.39 3.03 7.90 -40.82 -0.32 2.70 16 36 H 0.06 0.62 7.85 -51.93 -0.41 0.21 16 37 H 0.07 0.95 6.29 -51.93 -0.33 0.62 16 38 H 0.06 1.10 6.93 -51.93 -0.36 0.74 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.26 7.99 -51.93 -0.42 0.84 16 41 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.04 1.02 3.40 -51.93 -0.18 0.85 16 44 H 0.03 0.54 6.88 -51.93 -0.36 0.18 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -37.84 368.49 -8.02 -45.86 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.04 Total: 3.70 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 0.25 Total: -1.58 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.11 Total: -59.72 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.94 Total: -33.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.29 Total: 17.82 kcal Atomic # 16 Polarization: 22.50 SS G_CDS: -0.65 Total: 21.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.84 -8.02 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733763314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.716 kcal (2) G-P(sol) polarization free energy of solvation -37.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds