Wall clock time and date at job start Tue Mar 31 2020 17:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 N 1.46499 * 109.47069 * 240.00309 * 2 1 3 5 5 S 1.65597 * 120.00380 * 95.00005 * 4 2 1 6 6 C 1.81396 * 104.45240 * 64.99603 * 5 4 2 7 7 O 1.42107 * 104.27336 * 308.92285 * 5 4 2 8 8 O 1.42096 * 104.27729 * 181.07268 * 5 4 2 9 9 C 1.50702 * 109.47344 * 119.99860 * 2 1 3 10 10 O 1.21275 * 119.99828 * 119.99876 * 9 2 1 11 11 N 1.34773 * 119.99701 * 300.00350 * 9 2 1 12 12 C 1.46507 * 119.99771 * 180.02562 * 11 9 2 13 13 H 1.09002 * 109.20022 * 35.63838 * 12 11 9 14 14 C 1.50130 * 109.20895 * 154.99859 * 12 11 9 15 15 C 1.52529 * 105.41496 * 218.02817 * 14 12 11 16 16 C 1.46240 * 114.27306 * 270.59522 * 15 14 12 17 17 N 1.50163 * 107.53381 * 58.40786 * 16 15 14 18 18 C 1.36938 * 120.53980 * 109.57030 * 17 16 15 19 19 H 1.08001 * 119.99347 * 320.22634 * 18 17 16 20 20 C 1.38804 * 120.00307 * 140.22872 * 18 17 16 21 21 N 1.31625 * 119.99878 * 156.34107 * 20 18 17 22 22 Si 1.86791 * 120.00208 * 336.34262 * 20 18 17 23 23 H 1.48503 * 109.47521 * 95.57480 * 22 20 18 24 24 H 1.48509 * 109.47358 * 215.57300 * 22 20 18 25 25 H 1.48501 * 109.47297 * 335.57468 * 22 20 18 26 26 C 1.43433 * 118.92675 * 289.58262 * 17 16 15 27 27 C 1.54838 * 109.20744 * 276.32063 * 12 11 9 28 28 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47226 * 300.00155 * 1 2 3 30 30 H 1.09002 * 109.47384 * 60.00027 * 1 2 3 31 31 H 0.97003 * 119.99832 * 274.99747 * 4 2 1 32 32 H 1.09003 * 109.47039 * 300.00444 * 6 5 4 33 33 H 1.08995 * 109.47307 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.47207 * 60.00102 * 6 5 4 35 35 H 0.97004 * 120.00462 * 359.97438 * 11 9 2 36 36 H 1.09005 * 110.25000 * 336.99617 * 14 12 11 37 37 H 1.08996 * 110.24646 * 98.90682 * 14 12 11 38 38 H 1.08993 * 108.52408 * 31.83353 * 15 14 12 39 39 H 1.08994 * 108.51941 * 149.35651 * 15 14 12 40 40 H 1.09005 * 109.84674 * 177.91741 * 16 15 14 41 41 H 1.09004 * 109.84340 * 298.83223 * 16 15 14 42 42 H 0.97006 * 120.00111 * 179.97438 * 21 20 18 43 43 H 1.08991 * 108.16384 * 213.28687 * 26 17 16 44 44 H 1.08996 * 108.16050 * 330.06977 * 26 17 16 45 45 H 1.08998 * 109.36241 * 320.99429 * 27 12 11 46 46 H 1.08999 * 109.36017 * 80.58228 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.4121 0.1772 -2.5505 6 6 3.8312 1.1873 -2.0442 7 8 1.2749 0.9966 -2.7846 8 8 2.8121 -0.8075 -3.4936 9 6 2.0324 -0.7104 1.2305 10 8 2.7296 -1.6964 1.1192 11 7 1.7067 -0.2499 2.4545 12 6 2.1956 -0.9402 3.6507 13 1 3.1993 -1.3201 3.4603 14 6 2.2435 0.0297 4.7957 15 6 3.5035 -0.3279 5.5775 16 6 3.2978 -1.3275 6.6248 17 7 2.7509 -2.5631 5.9697 18 6 3.5190 -3.6917 5.8621 19 1 4.5687 -3.6094 5.6213 20 6 2.9487 -4.9412 6.0625 21 7 3.5021 -6.0102 5.5302 22 14 1.3959 -5.1056 7.0876 23 1 0.2106 -5.1139 6.1929 24 1 1.4433 -6.3743 7.8581 25 1 1.2990 -3.9594 8.0268 26 6 1.4111 -2.5421 5.4583 27 6 1.2553 -2.1271 3.9740 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.1109 -1.6561 -1.1949 32 1 3.5398 1.8343 -1.2167 33 1 4.1604 1.7986 -2.8844 34 1 4.6459 0.5363 -1.7268 35 1 1.1493 0.5390 2.5435 36 1 2.3087 1.0516 4.4221 37 1 1.3610 -0.0857 5.4249 38 1 4.2487 -0.7071 4.8784 39 1 3.8949 0.5796 6.0370 40 1 4.2466 -1.5553 7.1106 41 1 2.5865 -0.9518 7.3604 42 1 3.1038 -6.8835 5.6705 43 1 0.9857 -3.5383 5.5788 44 1 0.8268 -1.8500 6.0646 45 1 0.2228 -1.8312 3.7881 46 1 1.5075 -2.9726 3.3340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733763314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:42 Heat of formation + Delta-G solvation = -108.754074 kcal Electronic energy + Delta-G solvation = -28138.937281 eV Core-core repulsion = 24190.523046 eV Total energy + Delta-G solvation = -3948.414235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.24479 -39.57427 -38.19106 -37.04576 -36.59562 -36.17199 -34.58177 -33.09440 -32.45613 -30.57152 -30.27547 -28.04108 -26.08086 -25.39085 -24.45368 -21.94401 -21.34701 -21.00337 -20.52487 -19.11567 -18.51188 -18.15370 -17.54503 -17.27431 -17.11385 -16.66813 -16.27777 -16.08715 -15.75081 -15.60962 -14.93997 -14.85272 -14.63203 -14.26602 -14.16638 -14.04429 -13.98635 -13.72973 -13.56403 -13.45496 -13.27126 -13.19799 -13.09265 -12.76645 -12.67536 -12.63811 -12.36918 -12.19209 -12.05630 -12.03364 -11.74483 -11.59981 -11.45238 -11.24327 -10.96568 -10.58312 -10.43486 -9.98097 -8.65250 -8.20486 -5.59732 -0.69495 1.30760 1.39430 1.51936 1.59641 1.64082 2.25756 2.42879 2.88449 3.02755 3.24691 3.37536 3.55427 3.86170 3.90664 3.99925 4.05688 4.07630 4.17290 4.22523 4.39279 4.40646 4.45745 4.60605 4.72438 4.85643 4.86068 4.92212 4.93521 5.01207 5.04237 5.13704 5.21680 5.28987 5.33388 5.41983 5.43654 5.63087 5.67893 5.89030 5.96380 6.18247 6.64680 7.04383 7.34536 7.66649 8.10324 8.99745 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002977 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.663954 B = 9401.787209 C = 9835.139980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 H 0.150 0.850 4 N -1.110 6.110 5 S 2.628 3.372 6 C -0.658 4.658 7 O -0.979 6.979 8 O -1.003 7.003 9 C 0.498 3.502 10 O -0.578 6.578 11 N -0.706 5.706 12 C 0.165 3.835 13 H 0.046 0.954 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.132 3.868 17 N -0.613 5.613 18 C -0.256 4.256 19 H 0.028 0.972 20 C -0.022 4.022 21 N -0.951 5.951 22 Si 0.949 3.051 23 H -0.280 1.280 24 H -0.310 1.310 25 H -0.249 1.249 26 C 0.145 3.855 27 C -0.142 4.142 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.420 0.580 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.420 0.580 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.032 0.968 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.261 0.739 43 H 0.012 0.988 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 24.517 -9.023 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 H 0.168 0.832 4 N -0.868 5.868 5 S 2.724 3.276 6 C -0.812 4.812 7 O -0.969 6.969 8 O -0.994 6.994 9 C 0.283 3.717 10 O -0.456 6.456 11 N -0.360 5.360 12 C 0.061 3.939 13 H 0.064 0.936 14 C -0.145 4.145 15 C -0.167 4.167 16 C 0.010 3.990 17 N -0.337 5.337 18 C -0.386 4.386 19 H 0.045 0.955 20 C -0.218 4.218 21 N -0.595 5.595 22 Si 0.778 3.222 23 H -0.208 1.208 24 H -0.238 1.238 25 H -0.173 1.173 26 C 0.018 3.982 27 C -0.184 4.184 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.255 0.745 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.258 0.742 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -6.536 23.819 -9.921 26.618 hybrid contribution 0.164 -1.492 0.653 1.637 sum -6.372 22.328 -9.268 25.000 Atomic orbital electron populations 1.22320 0.91463 1.03371 1.05462 1.20863 0.97030 0.97280 0.82211 0.83248 1.55523 1.82200 1.20376 1.28726 1.04221 0.76797 0.74353 0.72278 1.30388 1.19552 1.16440 1.14812 1.93579 1.48389 1.70828 1.84136 1.93574 1.85196 1.59781 1.60828 1.21344 0.79733 0.84571 0.86090 1.90782 1.39596 1.28163 1.87083 1.46169 1.53267 1.31938 1.04607 1.20841 0.96546 0.92059 0.84504 0.93609 1.21301 0.99101 0.98656 0.95467 1.20751 0.97785 0.99389 0.98735 1.20669 0.98337 0.85638 0.94363 1.44340 1.13253 1.10781 1.65336 1.18546 0.93605 0.84750 1.41679 0.95452 1.26206 1.01633 0.95015 0.98978 1.70065 1.44565 0.99603 1.45287 0.85738 0.79874 0.76697 0.79941 1.20774 1.23829 1.17260 1.20737 0.86477 0.98103 0.92910 1.23103 0.99537 0.97242 0.98484 0.93075 0.88033 0.89538 0.74488 0.82802 0.83034 0.84589 0.74166 0.87549 0.89409 0.94930 0.89465 0.92883 0.91977 0.93016 0.97000 0.91211 0.89732 0.96991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.41 71.98 0.68 -1.55 16 2 C 0.14 2.10 3.09 44.25 0.14 2.24 16 3 H 0.15 0.86 7.15 -2.39 -0.02 0.85 16 4 N -1.11 -20.65 5.15 -172.52 -0.89 -21.54 16 5 S 2.63 42.70 6.02 -56.49 -0.34 42.36 16 6 C -0.66 -4.98 10.78 113.37 1.22 -3.76 16 7 O -0.98 -19.63 17.11 -127.65 -2.18 -21.82 16 8 O -1.00 -25.93 18.08 -127.65 -2.31 -28.24 16 9 C 0.50 12.15 7.17 87.66 0.63 12.78 16 10 O -0.58 -21.54 15.66 -3.02 -0.05 -21.59 16 11 N -0.71 -14.14 4.87 -443.94 -2.16 -16.30 16 12 C 0.17 4.82 2.22 44.69 0.10 4.92 16 13 H 0.05 1.84 6.27 -2.39 -0.01 1.82 16 14 C -0.11 -2.27 5.33 29.51 0.16 -2.11 16 15 C -0.13 -3.44 5.20 28.36 0.15 -3.29 16 16 C 0.13 4.52 6.11 83.58 0.51 5.03 16 17 N -0.61 -27.68 2.14 -707.86 -1.51 -29.19 16 18 C -0.26 -14.76 9.92 84.03 0.83 -13.93 16 19 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 20 C -0.02 -1.32 5.28 84.86 0.45 -0.87 16 21 N -0.95 -61.91 13.97 21.65 0.30 -61.61 16 22 Si 0.95 46.91 25.26 68.60 1.73 48.64 16 23 H -0.28 -13.42 6.73 99.48 0.67 -12.75 16 24 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 25 H -0.25 -11.31 7.11 99.48 0.71 -10.61 16 26 C 0.15 5.83 4.22 87.60 0.37 6.20 16 27 C -0.14 -5.09 5.98 31.87 0.19 -4.90 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.73 7.56 -2.39 -0.02 0.71 16 30 H 0.09 1.18 7.42 -2.39 -0.02 1.16 16 31 H 0.42 9.56 8.17 -96.74 -0.79 8.77 16 32 H 0.15 0.37 7.44 -2.39 -0.02 0.35 16 33 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.42 4.15 7.90 -92.71 -0.73 3.42 16 36 H 0.11 1.38 7.85 -2.38 -0.02 1.36 16 37 H 0.09 1.70 6.29 -2.39 -0.02 1.68 16 38 H 0.03 1.09 6.93 -2.39 -0.02 1.08 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.93 7.99 -2.38 -0.02 1.92 16 41 H 0.06 1.79 8.13 -2.38 -0.02 1.77 16 42 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 43 H 0.01 0.56 3.40 -2.39 -0.01 0.55 16 44 H 0.07 2.25 6.88 -2.39 -0.02 2.24 16 45 H 0.08 2.41 8.12 -2.39 -0.02 2.39 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -92.27 368.49 -2.53 -94.80 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.55 Total: 13.74 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.42 Total: 0.75 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -4.26 Total: -128.64 kcal Atomic # 8 Polarization: -67.10 SS G_CDS: -4.54 Total: -71.64 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.73 Total: 48.64 kcal Atomic # 16 Polarization: 42.70 SS G_CDS: -0.34 Total: 42.36 kcal Total: -92.27 -2.53 -94.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733763314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.954 kcal (2) G-P(sol) polarization free energy of solvation -92.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds