Wall clock time and date at job start Tue Mar 31 2020 19:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99844 * 2 1 4 4 N 1.34779 * 120.00244 * 179.97438 * 2 1 3 5 5 C 1.46963 * 120.59515 * 185.79123 * 4 2 1 6 6 C 1.53367 * 108.63302 * 235.24892 * 5 4 2 7 7 N 1.46962 * 108.63836 * 310.57643 * 6 5 4 8 8 C 1.34776 * 120.59488 * 235.20659 * 7 6 5 9 9 O 1.21592 * 119.99975 * 5.16098 * 8 7 6 10 10 N 1.34779 * 120.00106 * 185.16295 * 8 7 6 11 11 C 1.40026 * 120.00153 * 175.27992 * 10 8 7 12 12 C 1.38914 * 119.99838 * 215.32498 * 11 10 8 13 13 C 1.38005 * 119.99329 * 180.27519 * 12 11 10 14 14 C 1.38905 * 120.00636 * 359.46974 * 13 12 11 15 15 O 1.35777 * 120.00094 * 180.29723 * 14 13 12 16 16 C 1.34812 * 117.00018 * 354.81704 * 15 14 13 17 17 H 1.07991 * 120.00438 * 5.02181 * 16 15 14 18 18 C 1.38637 * 119.99736 * 185.01463 * 16 15 14 19 19 N 1.31571 * 119.99620 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99880 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47184 * 89.99593 * 20 18 16 22 22 H 1.48506 * 109.46889 * 209.99330 * 20 18 16 23 23 H 1.48491 * 109.47323 * 329.99504 * 20 18 16 24 24 C 1.38905 * 119.99730 * 0.27558 * 14 13 12 25 25 C 1.38014 * 120.00125 * 359.97438 * 24 14 13 26 26 C 1.46962 * 118.80784 * 55.47708 * 7 6 5 27 27 C 1.46967 * 120.58995 * 5.81729 * 4 2 1 28 28 H 1.08998 * 109.46901 * 185.48081 * 1 2 3 29 29 H 1.09005 * 109.46730 * 305.47317 * 1 2 3 30 30 H 1.09000 * 109.47351 * 65.47609 * 1 2 3 31 31 H 1.08997 * 109.60476 * 115.50728 * 5 4 2 32 32 H 1.08998 * 109.60947 * 354.99524 * 5 4 2 33 33 H 1.09003 * 109.60705 * 190.83068 * 6 5 4 34 34 H 1.08999 * 109.75305 * 70.41116 * 6 5 4 35 35 H 0.97005 * 119.99288 * 355.28500 * 10 8 7 36 36 H 1.07997 * 120.00259 * 0.03782 * 12 11 10 37 37 H 1.08008 * 119.99498 * 179.74641 * 13 12 11 38 38 H 0.96999 * 119.99716 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.00021 * 180.02562 * 24 14 13 40 40 H 1.08001 * 119.99922 * 180.02562 * 25 24 14 41 41 H 1.09003 * 109.60850 * 64.27202 * 26 7 6 42 42 H 1.09004 * 109.60759 * 184.77548 * 26 7 6 43 43 H 1.08996 * 109.60684 * 244.49578 * 27 4 2 44 44 H 1.08999 * 109.60841 * 4.83424 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6449 -1.1856 0.1282 6 6 4.2307 -1.9593 -1.0594 7 7 3.5148 -3.2364 -1.1871 8 6 4.1887 -4.4035 -1.1875 9 8 5.3881 -4.4130 -0.9878 10 7 3.5333 -5.5601 -1.4093 11 6 4.2464 -6.7612 -1.5080 12 6 3.8251 -7.7486 -2.3896 13 6 4.5246 -8.9345 -2.4828 14 6 5.6564 -9.1365 -1.7031 15 8 6.3480 -10.3009 -1.7992 16 6 5.8246 -11.2603 -2.5885 17 1 4.9396 -11.0558 -3.1725 18 6 6.4228 -12.5095 -2.6506 19 7 5.9116 -13.4460 -3.4206 20 14 7.9534 -12.8634 -1.6401 21 1 7.5573 -13.3937 -0.3108 22 1 8.7902 -13.8678 -2.3445 23 1 8.7295 -11.6100 -1.4617 24 6 6.0807 -8.1470 -0.8254 25 6 5.3782 -6.9630 -0.7284 26 6 2.0513 -3.2176 -1.3203 27 6 1.4649 -2.4443 -0.1271 28 1 -0.3633 -1.0230 0.0982 29 1 -0.3633 0.5964 0.8370 30 1 -0.3634 0.4265 -0.9349 31 1 3.9246 -1.6781 1.0594 32 1 4.0254 -0.1642 0.1229 33 1 5.2898 -2.1494 -0.8856 34 1 4.1087 -1.3785 -1.9737 35 1 2.5676 -5.5604 -1.5005 36 1 2.9479 -7.5897 -2.9993 37 1 4.1947 -9.7039 -3.1652 38 1 6.3299 -14.3201 -3.4638 39 1 6.9608 -8.3038 -0.2195 40 1 5.7084 -6.1935 -0.0463 41 1 1.7751 -2.7231 -2.2516 42 1 1.6708 -4.2391 -1.3189 43 1 1.5895 -3.0263 0.7860 44 1 0.4053 -2.2541 -0.2980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771592767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:06 Heat of formation + Delta-G solvation = -27.280487 kcal Electronic energy + Delta-G solvation = -27853.081368 eV Core-core repulsion = 23772.756141 eV Total energy + Delta-G solvation = -4080.325226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.08809 -40.09209 -39.00667 -37.59514 -36.55168 -34.57342 -34.05956 -32.40840 -32.13381 -30.32034 -30.16362 -28.59231 -27.26451 -25.23300 -24.37152 -23.27896 -22.33568 -21.47604 -20.39679 -19.45847 -18.46754 -17.86480 -17.49602 -17.16240 -16.83480 -16.39371 -16.07910 -15.78782 -15.40803 -14.81732 -14.52571 -14.45223 -14.15732 -14.00132 -13.84165 -13.74225 -13.61118 -13.39692 -12.85447 -12.65387 -12.50356 -12.33868 -12.29207 -12.12511 -11.94310 -11.81260 -11.69585 -11.61578 -10.98151 -10.78429 -10.26867 -10.20802 -10.04523 -9.66866 -9.64475 -9.34535 -8.82581 -8.70258 -8.29801 -7.05825 -6.42209 -4.07967 2.02350 2.10333 2.14160 2.23772 2.64292 3.11755 3.23341 3.26549 3.42010 3.62222 4.03012 4.20794 4.24172 4.28692 4.46663 4.48406 4.61816 4.76661 4.82132 4.87965 4.89355 4.95365 5.08994 5.09782 5.21299 5.34276 5.38198 5.46655 5.53983 5.69909 5.89342 5.98082 6.05934 6.10462 6.21334 6.54014 6.68757 6.76221 6.86411 7.07274 7.09043 7.22307 7.58688 7.67066 7.77048 7.82157 8.02325 8.49718 8.93314 9.56152 10.65342 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.002011 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.420179 B =13917.749684 C =14373.302846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.514 3.486 3 O -0.546 6.546 4 N -0.614 5.614 5 C 0.096 3.904 6 C 0.117 3.883 7 N -0.633 5.633 8 C 0.705 3.295 9 O -0.570 6.570 10 N -0.674 5.674 11 C 0.059 3.941 12 C -0.093 4.093 13 C -0.206 4.206 14 C 0.152 3.848 15 O -0.217 6.217 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.178 4.178 25 C -0.069 4.069 26 C 0.096 3.904 27 C 0.088 3.912 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.279 0.721 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 22.792 6.105 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.303 3.697 3 O -0.423 6.423 4 N -0.349 5.349 5 C -0.027 4.027 6 C -0.006 4.006 7 N -0.371 5.371 8 C 0.407 3.593 9 O -0.446 6.446 10 N -0.324 5.324 11 C -0.034 4.034 12 C -0.113 4.113 13 C -0.226 4.226 14 C 0.099 3.901 15 O -0.122 6.122 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.198 4.198 25 C -0.089 4.089 26 C -0.028 4.028 27 C -0.036 4.036 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.328 23.060 6.255 26.887 hybrid contribution -0.169 -0.463 0.090 0.501 sum -12.497 22.597 6.345 26.591 Atomic orbital electron populations 1.22027 0.91658 1.04605 1.05531 1.20866 0.90706 0.82944 0.75193 1.90729 1.70635 1.30979 1.49978 1.48122 1.07574 1.06092 1.73077 1.22067 0.79331 1.02656 0.98650 1.21843 0.98481 0.82458 0.97864 1.47199 1.06291 1.05227 1.78433 1.15837 0.85120 0.80055 0.78250 1.90927 1.12716 1.85233 1.55766 1.42490 1.09541 1.04713 1.75617 1.17100 0.98029 0.86092 1.02134 1.20494 1.00288 0.93668 0.96895 1.21074 0.98225 0.98709 1.04577 1.19159 0.90489 0.86994 0.93433 1.83586 1.45799 1.20805 1.61980 1.20750 1.13321 0.90199 1.22169 0.87635 1.24466 0.98857 0.93954 0.96774 1.69652 1.40404 1.04242 1.37502 0.86179 0.82059 0.78841 0.79842 1.19892 1.20823 1.18298 1.20158 1.03281 0.93496 1.02817 1.20775 0.94356 0.95927 0.97863 1.22108 0.80812 1.01331 0.98578 1.22387 0.97309 0.84752 0.99184 0.89878 0.88580 0.88582 0.90705 0.87729 0.87325 0.91171 0.76662 0.86996 0.84493 0.91074 0.86153 0.85006 0.90484 0.89060 0.90334 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 10.02 36.00 0.36 -0.31 16 2 C 0.51 4.09 7.79 -10.99 -0.09 4.01 16 3 O -0.55 -6.77 16.51 5.55 0.09 -6.67 16 4 N -0.61 -4.20 2.95 -172.22 -0.51 -4.71 16 5 C 0.10 0.76 6.60 -3.60 -0.02 0.74 16 6 C 0.12 1.04 6.60 -3.60 -0.02 1.01 16 7 N -0.63 -5.89 2.94 -177.95 -0.52 -6.42 16 8 C 0.71 9.43 8.14 -86.92 -0.71 8.72 16 9 O -0.57 -9.95 13.18 5.28 0.07 -9.88 16 10 N -0.67 -8.47 5.25 -14.18 -0.07 -8.54 16 11 C 0.06 0.99 6.30 -83.62 -0.53 0.46 16 12 C -0.09 -1.58 9.96 -39.42 -0.39 -1.98 16 13 C -0.21 -4.28 9.16 -39.42 -0.36 -4.65 16 14 C 0.15 3.47 6.65 -39.09 -0.26 3.22 16 15 O -0.22 -5.68 8.58 0.02 0.00 -5.68 16 16 C -0.39 -10.81 9.94 30.88 0.31 -10.50 16 17 H 0.11 2.96 5.43 -52.49 -0.28 2.68 16 18 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 19 N -0.88 -25.16 13.96 55.48 0.77 -24.38 16 20 Si 0.91 21.63 28.62 -169.99 -4.86 16.76 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.18 -3.63 9.99 -39.42 -0.39 -4.02 16 25 C -0.07 -1.28 8.69 -39.42 -0.34 -1.62 16 26 C 0.10 0.50 6.59 -3.37 -0.02 0.48 16 27 C 0.09 0.36 6.45 -3.37 -0.02 0.34 16 28 H 0.08 0.11 5.29 -51.93 -0.27 -0.17 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.91 6.99 -51.93 -0.36 0.54 16 33 H 0.11 1.12 6.99 -51.93 -0.36 0.76 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.47 6.29 -40.82 -0.26 3.22 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.14 2.96 5.63 -52.48 -0.30 2.66 16 38 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.13 2.41 6.21 -52.49 -0.33 2.09 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.34 5.61 -51.93 -0.29 0.05 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.13 5.21 -51.93 -0.27 -0.14 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -35.35 358.61 -7.46 -42.81 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.24 Total: 3.76 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.59 Total: -2.45 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.33 Total: -44.05 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.16 Total: -22.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.35 -7.46 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771592767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.531 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds