Wall clock time and date at job start Tue Mar 31 2020 19:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99844 * 2 1 4 4 N 1.34779 * 120.00244 * 179.97438 * 2 1 3 5 5 C 1.46963 * 120.59515 * 185.79123 * 4 2 1 6 6 C 1.53367 * 108.63302 * 235.24892 * 5 4 2 7 7 N 1.46962 * 108.63836 * 310.57643 * 6 5 4 8 8 C 1.34776 * 120.59488 * 235.20659 * 7 6 5 9 9 O 1.21592 * 119.99975 * 5.16098 * 8 7 6 10 10 N 1.34779 * 120.00106 * 185.16295 * 8 7 6 11 11 C 1.40026 * 120.00153 * 175.27992 * 10 8 7 12 12 C 1.38914 * 119.99838 * 215.32498 * 11 10 8 13 13 C 1.38005 * 119.99329 * 180.27519 * 12 11 10 14 14 C 1.38905 * 120.00636 * 359.46974 * 13 12 11 15 15 O 1.35777 * 120.00094 * 180.29723 * 14 13 12 16 16 C 1.34812 * 117.00018 * 354.81704 * 15 14 13 17 17 H 1.07991 * 120.00438 * 5.02181 * 16 15 14 18 18 C 1.38637 * 119.99736 * 185.01463 * 16 15 14 19 19 N 1.31571 * 119.99620 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99880 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47184 * 89.99593 * 20 18 16 22 22 H 1.48506 * 109.46889 * 209.99330 * 20 18 16 23 23 H 1.48491 * 109.47323 * 329.99504 * 20 18 16 24 24 C 1.38905 * 119.99730 * 0.27558 * 14 13 12 25 25 C 1.38014 * 120.00125 * 359.97438 * 24 14 13 26 26 C 1.46962 * 118.80784 * 55.47708 * 7 6 5 27 27 C 1.46967 * 120.58995 * 5.81729 * 4 2 1 28 28 H 1.08998 * 109.46901 * 185.48081 * 1 2 3 29 29 H 1.09005 * 109.46730 * 305.47317 * 1 2 3 30 30 H 1.09000 * 109.47351 * 65.47609 * 1 2 3 31 31 H 1.08997 * 109.60476 * 115.50728 * 5 4 2 32 32 H 1.08998 * 109.60947 * 354.99524 * 5 4 2 33 33 H 1.09003 * 109.60705 * 190.83068 * 6 5 4 34 34 H 1.08999 * 109.75305 * 70.41116 * 6 5 4 35 35 H 0.97005 * 119.99288 * 355.28500 * 10 8 7 36 36 H 1.07997 * 120.00259 * 0.03782 * 12 11 10 37 37 H 1.08008 * 119.99498 * 179.74641 * 13 12 11 38 38 H 0.96999 * 119.99716 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.00021 * 180.02562 * 24 14 13 40 40 H 1.08001 * 119.99922 * 180.02562 * 25 24 14 41 41 H 1.09003 * 109.60850 * 64.27202 * 26 7 6 42 42 H 1.09004 * 109.60759 * 184.77548 * 26 7 6 43 43 H 1.08996 * 109.60684 * 244.49578 * 27 4 2 44 44 H 1.08999 * 109.60841 * 4.83424 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6449 -1.1856 0.1282 6 6 4.2307 -1.9593 -1.0594 7 7 3.5148 -3.2364 -1.1871 8 6 4.1887 -4.4035 -1.1875 9 8 5.3881 -4.4130 -0.9878 10 7 3.5333 -5.5601 -1.4093 11 6 4.2464 -6.7612 -1.5080 12 6 3.8251 -7.7486 -2.3896 13 6 4.5246 -8.9345 -2.4828 14 6 5.6564 -9.1365 -1.7031 15 8 6.3480 -10.3009 -1.7992 16 6 5.8246 -11.2603 -2.5885 17 1 4.9396 -11.0558 -3.1725 18 6 6.4228 -12.5095 -2.6506 19 7 5.9116 -13.4460 -3.4206 20 14 7.9534 -12.8634 -1.6401 21 1 7.5573 -13.3937 -0.3108 22 1 8.7902 -13.8678 -2.3445 23 1 8.7295 -11.6100 -1.4617 24 6 6.0807 -8.1470 -0.8254 25 6 5.3782 -6.9630 -0.7284 26 6 2.0513 -3.2176 -1.3203 27 6 1.4649 -2.4443 -0.1271 28 1 -0.3633 -1.0230 0.0982 29 1 -0.3633 0.5964 0.8370 30 1 -0.3634 0.4265 -0.9349 31 1 3.9246 -1.6781 1.0594 32 1 4.0254 -0.1642 0.1229 33 1 5.2898 -2.1494 -0.8856 34 1 4.1087 -1.3785 -1.9737 35 1 2.5676 -5.5604 -1.5005 36 1 2.9479 -7.5897 -2.9993 37 1 4.1947 -9.7039 -3.1652 38 1 6.3299 -14.3201 -3.4638 39 1 6.9608 -8.3038 -0.2195 40 1 5.7084 -6.1935 -0.0463 41 1 1.7751 -2.7231 -2.2516 42 1 1.6708 -4.2391 -1.3189 43 1 1.5895 -3.0263 0.7860 44 1 0.4053 -2.2541 -0.2980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771592767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:02 Heat of formation + Delta-G solvation = -51.889603 kcal Electronic energy + Delta-G solvation = -27854.148499 eV Core-core repulsion = 23772.756141 eV Total energy + Delta-G solvation = -4081.392358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -42.00578 -41.03562 -40.48233 -38.71006 -37.80567 -35.66774 -35.05203 -34.32892 -32.83625 -31.87245 -30.62193 -29.85678 -28.21289 -27.05995 -24.94123 -24.20398 -23.84719 -22.72222 -21.41668 -20.44964 -19.67228 -19.26707 -19.02150 -18.14748 -17.81968 -17.03393 -16.83708 -16.62042 -16.48536 -16.35363 -15.77229 -15.65766 -15.45876 -15.27459 -15.00608 -14.67289 -14.49387 -14.45350 -14.14789 -13.98038 -13.92121 -13.41923 -13.26555 -13.06038 -12.95088 -12.75996 -12.58531 -12.53671 -12.48024 -12.30976 -11.99579 -11.40374 -11.30397 -10.98878 -10.89030 -10.66671 -10.36465 -9.84240 -9.45648 -8.61744 -8.47238 -6.17787 0.51444 0.55471 1.33331 1.35015 1.37955 1.53698 1.56797 2.00730 2.04197 2.30245 2.77571 2.79460 3.08134 3.17937 3.57026 3.74470 3.86363 4.02729 4.06110 4.10308 4.14608 4.25094 4.40883 4.43310 4.49769 4.57097 4.62770 4.66142 4.69162 4.76634 4.77985 4.93916 5.07061 5.15286 5.17917 5.29811 5.38269 5.42602 5.51639 5.58092 5.78694 5.82486 5.94099 6.23289 6.35571 6.83483 6.87709 7.10741 7.44188 7.62977 8.63853 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.002011 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.420179 B =13917.749684 C =14373.302846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.600 6.600 4 N -0.613 5.613 5 C 0.102 3.898 6 C 0.121 3.879 7 N -0.623 5.623 8 C 0.702 3.298 9 O -0.615 6.615 10 N -0.661 5.661 11 C 0.090 3.910 12 C -0.083 4.083 13 C -0.213 4.213 14 C 0.112 3.888 15 O -0.246 6.246 16 C -0.396 4.396 17 H 0.088 0.912 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.178 4.178 25 C -0.075 4.075 26 C 0.088 3.912 27 C 0.087 3.913 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.284 0.716 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.431 24.622 6.676 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.481 6.481 4 N -0.346 5.346 5 C -0.022 4.022 6 C -0.003 4.003 7 N -0.360 5.360 8 C 0.404 3.596 9 O -0.495 6.495 10 N -0.313 5.313 11 C -0.004 4.004 12 C -0.103 4.103 13 C -0.233 4.233 14 C 0.063 3.937 15 O -0.154 6.154 16 C -0.472 4.472 17 H 0.106 0.894 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.197 4.197 25 C -0.095 4.095 26 C -0.035 4.035 27 C -0.035 4.035 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.261 0.739 36 H 0.173 0.827 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.088 24.938 6.833 29.938 hybrid contribution 0.468 -0.638 -0.045 0.792 sum -14.620 24.301 6.788 29.161 Atomic orbital electron populations 1.22059 0.87963 1.06755 1.06190 1.21700 0.92430 0.82228 0.73861 1.90708 1.72009 1.32938 1.52488 1.48248 1.07005 1.07141 1.72248 1.21865 0.80626 1.01667 0.98037 1.21794 0.97631 0.82349 0.98511 1.47220 1.08166 1.03825 1.76833 1.15986 0.84695 0.80966 0.77911 1.90911 1.14955 1.86009 1.57581 1.42266 1.10536 1.03160 1.75302 1.17162 0.96661 0.86977 0.99641 1.20770 1.00912 0.91912 0.96738 1.21135 0.98139 0.99915 1.04081 1.19604 0.91966 0.86766 0.95395 1.83533 1.47056 1.21752 1.63055 1.20735 1.13016 0.91099 1.22344 0.89447 1.25209 1.01722 0.93824 0.98020 1.69724 1.42172 1.04864 1.39446 0.85283 0.78713 0.78391 0.78765 1.19063 1.19344 1.19133 1.20320 1.03614 0.93552 1.02253 1.20919 0.95028 0.95169 0.98420 1.22500 0.77819 1.03207 0.99934 1.22634 0.98939 0.83118 0.98834 0.86818 0.88283 0.87581 0.90910 0.88956 0.89246 0.90554 0.73904 0.82686 0.85999 0.90662 0.85741 0.84528 0.88919 0.86819 0.89924 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.02 71.24 0.71 0.09 16 2 C 0.51 6.95 7.79 87.66 0.68 7.63 16 3 O -0.60 -14.60 16.51 -3.04 -0.05 -14.65 16 4 N -0.61 -6.70 2.95 -817.18 -2.41 -9.11 16 5 C 0.10 1.51 6.60 86.41 0.57 2.08 16 6 C 0.12 1.98 6.60 86.41 0.57 2.55 16 7 N -0.62 -9.72 2.94 -835.16 -2.46 -12.17 16 8 C 0.70 16.83 8.14 179.05 1.46 18.29 16 9 O -0.61 -20.66 13.18 -4.00 -0.05 -20.71 16 10 N -0.66 -13.97 5.25 -317.04 -1.66 -15.64 16 11 C 0.09 2.73 6.30 38.15 0.24 2.97 16 12 C -0.08 -2.60 9.96 22.38 0.22 -2.38 16 13 C -0.21 -8.84 9.16 22.37 0.20 -8.64 16 14 C 0.11 5.23 6.65 22.59 0.15 5.38 16 15 O -0.25 -13.38 8.58 -22.85 -0.20 -13.58 16 16 C -0.40 -22.92 9.94 67.92 0.68 -22.24 16 17 H 0.09 5.19 5.43 -2.92 -0.02 5.18 16 18 C 0.01 0.61 5.49 84.83 0.47 1.08 16 19 N -0.92 -54.29 13.96 21.61 0.30 -53.99 16 20 Si 0.97 45.61 28.62 68.60 1.96 47.58 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 24 C -0.18 -7.26 9.99 22.38 0.22 -7.04 16 25 C -0.08 -2.68 8.69 22.38 0.19 -2.48 16 26 C 0.09 0.50 6.59 86.56 0.57 1.07 16 27 C 0.09 0.30 6.45 86.56 0.56 0.86 16 28 H 0.11 -0.35 5.29 -2.39 -0.01 -0.36 16 29 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.63 6.99 -2.39 -0.02 1.61 16 33 H 0.09 1.84 6.99 -2.39 -0.02 1.83 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.42 5.06 6.29 -92.70 -0.58 4.48 16 36 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.12 5.43 5.63 -2.91 -0.02 5.42 16 38 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 40 H 0.14 4.83 6.21 -2.91 -0.02 4.81 16 41 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.11 0.15 5.61 -2.38 -0.01 0.14 16 43 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.14 -0.56 5.21 -2.39 -0.01 -0.58 16 Total: -1.00 -82.13 358.61 3.42 -78.71 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.48 Total: 14.33 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 7.50 Total: -0.77 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -6.23 Total: -90.91 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.30 Total: -48.93 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.96 Total: 47.58 kcal Total: -82.13 3.42 -78.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771592767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.825 kcal (2) G-P(sol) polarization free energy of solvation -82.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds