Wall clock time and date at job start Tue Mar 31 2020 17:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81392 * 109.47232 * 2 1 4 4 O 1.42098 * 110.54390 * 68.37443 * 3 2 1 5 5 O 1.42103 * 110.54397 * 291.62172 * 3 2 1 6 6 N 1.65605 * 104.44887 * 180.02562 * 3 2 1 7 7 C 1.46491 * 120.00185 * 64.99515 * 6 3 2 8 8 H 1.09004 * 109.47166 * 25.00318 * 7 6 3 9 9 C 1.53000 * 109.47268 * 265.00191 * 7 6 3 10 10 C 1.50702 * 109.46957 * 145.00052 * 7 6 3 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 7 6 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 7 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.46716 * 64.99947 * 14 13 12 16 16 N 1.46496 * 109.47141 * 305.00435 * 14 13 12 17 17 C 1.36944 * 120.00042 * 154.99672 * 16 14 13 18 18 H 1.07996 * 119.99561 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99744 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00400 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99736 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47316 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47336 * 119.99778 * 21 19 17 24 24 H 1.48500 * 109.47142 * 239.99870 * 21 19 17 25 25 C 1.53002 * 109.47339 * 185.00128 * 14 13 12 26 26 C 1.53005 * 117.49847 * 248.74842 * 25 14 13 27 27 C 1.52998 * 117.49486 * 180.09099 * 25 14 13 28 28 H 1.09004 * 109.47094 * 299.99849 * 1 2 3 29 29 H 1.08994 * 109.47004 * 59.99938 * 1 2 3 30 30 H 1.09001 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46993 * 239.99469 * 2 1 3 32 32 H 1.09003 * 109.47075 * 120.00210 * 2 1 3 33 33 H 0.97007 * 119.99668 * 244.99686 * 6 3 2 34 34 H 1.08994 * 109.47175 * 60.00166 * 9 7 6 35 35 H 1.09001 * 109.46739 * 179.97438 * 9 7 6 36 36 H 1.08996 * 109.46783 * 299.99597 * 9 7 6 37 37 H 0.97000 * 120.00317 * 0.28382 * 12 10 7 38 38 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 39 39 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 40 40 H 0.96998 * 120.00378 * 334.99902 * 16 14 13 41 41 H 0.96998 * 119.99891 * 180.02562 * 20 19 17 42 42 H 1.08993 * 115.54595 * 34.41974 * 25 14 13 43 43 H 1.08996 * 117.49481 * 0.02562 * 26 25 14 44 44 H 1.08991 * 117.49647 * 145.02380 * 26 25 14 45 45 H 1.09009 * 117.49579 * 214.97633 * 27 25 14 46 46 H 1.09001 * 117.50251 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2369 5 8 1.8387 2.3438 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4666 0.9670 -1.1508 8 1 3.8493 1.0854 -2.0414 9 6 4.7012 -0.5217 -0.8871 10 6 5.7909 1.6544 -1.3625 11 8 6.1315 2.5550 -0.6250 12 7 6.5995 1.2644 -2.3678 13 6 7.8896 1.9285 -2.5699 14 6 8.6044 1.3006 -3.7681 15 1 8.0335 1.4972 -4.6756 16 7 8.7174 -0.1460 -3.5661 17 6 8.8323 -0.9812 -4.6453 18 1 8.8392 -0.5734 -5.6452 19 6 8.9389 -2.3518 -4.4538 20 7 8.9300 -2.8488 -3.2351 21 14 9.0963 -3.4910 -5.9259 22 1 9.0815 -2.6895 -7.1759 23 1 10.3733 -4.2436 -5.8351 24 1 7.9589 -4.4456 -5.9370 25 6 10.0024 1.9074 -3.9034 26 6 10.2672 2.8090 -5.1109 27 6 10.8810 1.4080 -5.0521 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 4.2989 1.8763 0.7605 34 1 3.7434 -1.0189 -0.7340 35 1 5.2084 -0.9668 -1.7431 36 1 5.3185 -0.6401 0.0034 37 1 6.3273 0.5439 -2.9575 38 1 7.7263 2.9893 -2.7598 39 1 8.5033 1.8096 -1.6770 40 1 8.7108 -0.5123 -2.6679 41 1 9.0048 -3.8066 -3.1014 42 1 10.4964 2.1633 -2.9662 43 1 9.4454 2.9701 -5.8085 44 1 10.9360 3.6577 -4.9681 45 1 11.9535 1.3357 -4.8706 46 1 10.4634 0.6468 -5.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490666607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:51 Heat of formation + Delta-G solvation = -77.655051 kcal Electronic energy + Delta-G solvation = -27389.359833 eV Core-core repulsion = 23442.294153 eV Total energy + Delta-G solvation = -3947.065680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79754 -37.68663 -37.28238 -36.14378 -35.61904 -34.72573 -33.52987 -33.47120 -31.19868 -29.93347 -27.96850 -24.97301 -24.17458 -23.45699 -22.22058 -21.72872 -20.30075 -19.64177 -19.53257 -18.35437 -17.60816 -17.08703 -16.50975 -16.06329 -15.83266 -15.35691 -15.04647 -14.88719 -14.58114 -14.35122 -14.08598 -13.70181 -13.58009 -13.35629 -13.18876 -13.04190 -12.84831 -12.47739 -12.28951 -12.20919 -12.12448 -12.02507 -11.84367 -11.71726 -11.42359 -11.22362 -10.94649 -10.91429 -10.88829 -10.77308 -10.15867 -10.03614 -9.98775 -9.68105 -9.45160 -9.33227 -9.06030 -8.73651 -7.12774 -5.89967 -3.19345 0.01390 2.44779 2.76714 3.33037 3.39645 3.41143 3.42222 3.56335 3.94626 4.24888 4.35677 4.45181 4.53372 4.60848 4.81129 4.83720 4.94233 5.14717 5.17340 5.22751 5.31209 5.40539 5.46559 5.51821 5.55170 5.55652 5.69909 5.82884 5.85456 5.95523 6.02219 6.07938 6.13197 6.33719 6.49439 6.54207 6.71659 6.79959 6.83941 6.92742 7.58869 7.79691 8.26981 8.41143 9.39776 9.93181 10.29694 11.31742 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003081 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.115837 B = 9086.941860 C =10615.531024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.614 3.386 4 O -0.956 6.956 5 O -0.955 6.955 6 N -1.100 6.100 7 C 0.127 3.873 8 H 0.116 0.884 9 C -0.176 4.176 10 C 0.512 3.488 11 O -0.543 6.543 12 N -0.707 5.707 13 C 0.118 3.882 14 C 0.193 3.807 15 H 0.056 0.944 16 N -0.717 5.717 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.159 4.159 26 C -0.196 4.196 27 C -0.156 4.156 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.425 0.575 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 4.902 4.467 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.705 3.295 4 O -0.947 6.947 5 O -0.945 6.945 6 N -0.860 5.860 7 C 0.016 3.984 8 H 0.134 0.866 9 C -0.235 4.235 10 C 0.296 3.704 11 O -0.421 6.421 12 N -0.359 5.359 13 C -0.006 4.006 14 C 0.082 3.918 15 H 0.074 0.926 16 N -0.358 5.358 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.181 4.181 26 C -0.234 4.234 27 C -0.193 4.193 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.354 6.193 4.666 14.586 hybrid contribution 0.688 -1.894 -0.441 2.063 sum -11.665 4.300 4.225 13.131 Atomic orbital electron populations 1.21503 0.90449 1.05127 1.03444 1.30659 1.07321 1.26466 1.12069 1.04943 0.72899 0.77213 0.74406 1.93608 1.83009 1.72961 1.45087 1.93612 1.83315 1.71933 1.45591 1.55363 1.25525 1.77532 1.27597 1.20710 0.94139 0.93627 0.89949 0.86617 1.22436 1.03341 0.92667 1.05083 1.20321 0.85689 0.83421 0.81005 1.90674 1.74889 1.30561 1.45942 1.45925 1.19201 1.38672 1.32104 1.21633 0.83427 0.96169 0.99377 1.20064 0.91119 0.85664 0.94951 0.92584 1.42463 1.87466 0.98819 1.07035 1.19209 1.42467 0.87726 0.87370 0.91064 1.24698 1.02765 0.96809 0.96204 1.69662 1.57129 1.11932 1.18929 0.86206 0.77292 0.81155 0.82016 1.20574 1.21936 1.21941 1.23017 0.99940 1.02365 0.92789 1.22964 1.03686 0.94200 1.02542 1.22783 0.97962 0.96034 1.02520 0.91012 0.90894 0.89924 0.84626 0.84612 0.73759 0.91418 0.89203 0.90735 0.75144 0.91487 0.91649 0.78056 0.93546 0.89153 0.89508 0.90079 0.90229 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.92 37.16 0.37 -0.53 16 2 C -0.64 -4.15 5.94 37.16 0.22 -3.93 16 3 S 2.61 27.19 5.44 -107.50 -0.58 26.61 16 4 O -0.96 -12.82 18.08 -57.54 -1.04 -13.86 16 5 O -0.95 -13.06 17.39 -57.54 -1.00 -14.06 16 6 N -1.10 -12.01 5.15 -5.88 -0.03 -12.04 16 7 C 0.13 1.44 3.22 -69.09 -0.22 1.22 16 8 H 0.12 1.14 7.48 -51.93 -0.39 0.75 16 9 C -0.18 -1.72 9.37 37.16 0.35 -1.37 16 10 C 0.51 7.65 7.22 -10.98 -0.08 7.57 16 11 O -0.54 -9.77 15.99 5.55 0.09 -9.68 16 12 N -0.71 -10.52 5.28 -60.29 -0.32 -10.83 16 13 C 0.12 1.88 5.22 -4.04 -0.02 1.86 16 14 C 0.19 3.34 2.70 -67.93 -0.18 3.15 16 15 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 16 N -0.72 -15.23 4.54 -53.43 -0.24 -15.47 16 17 C -0.24 -5.68 8.63 -15.06 -0.13 -5.81 16 18 H 0.07 1.69 6.91 -52.49 -0.36 1.33 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -25.26 13.06 55.49 0.72 -24.53 16 21 Si 0.90 20.59 29.55 -169.99 -5.02 15.56 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 C -0.16 -2.64 5.36 -90.62 -0.49 -3.13 16 26 C -0.20 -2.86 10.18 -26.69 -0.27 -3.14 16 27 C -0.16 -2.65 9.78 -26.69 -0.26 -2.91 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 0.69 6.77 -51.93 -0.35 0.34 16 32 H 0.14 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.43 4.77 8.17 -34.47 -0.28 4.49 16 34 H 0.07 0.47 5.78 -51.93 -0.30 0.17 16 35 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 5.98 7.55 -40.82 -0.31 5.67 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.39 8.95 7.80 -40.82 -0.32 8.63 16 41 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.09 1.48 8.11 -51.93 -0.42 1.05 16 43 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 46 H 0.10 2.00 6.23 -51.93 -0.32 1.67 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -32.95 388.67 -9.59 -42.54 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -7.21 Total: 17.23 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.81 Total: -7.33 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.13 Total: -62.87 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.95 Total: -37.60 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 27.19 SS G_CDS: -0.58 Total: 26.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.95 -9.59 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490666607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.111 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds