Wall clock time and date at job start Tue Mar 31 2020 17:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81402 * 109.47127 * 2 1 4 4 O 1.42100 * 110.54626 * 68.37320 * 3 2 1 5 5 O 1.42101 * 110.53678 * 291.62219 * 3 2 1 6 6 N 1.65597 * 104.45066 * 180.02562 * 3 2 1 7 7 C 1.46499 * 119.99926 * 64.71997 * 6 3 2 8 8 H 1.09008 * 109.47522 * 335.27388 * 7 6 3 9 9 C 1.52996 * 109.47213 * 95.27634 * 7 6 3 10 10 C 1.50697 * 109.47249 * 215.27890 * 7 6 3 11 11 O 1.21288 * 120.00184 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00285 * 180.02562 * 10 7 6 13 13 C 1.46501 * 120.00087 * 179.97438 * 12 10 7 14 14 C 1.53778 * 113.61437 * 254.13460 * 13 12 10 15 15 C 1.54048 * 86.98760 * 270.83956 * 14 13 12 16 16 C 1.53008 * 113.62001 * 220.02335 * 15 14 13 17 17 N 1.46503 * 109.46848 * 272.49474 * 16 15 14 18 18 C 1.36938 * 119.99671 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00226 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99356 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00703 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99394 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46864 * 120.00178 * 22 20 18 25 25 H 1.48496 * 109.46865 * 240.00041 * 22 20 18 26 26 C 1.53781 * 87.07795 * 334.56635 * 15 14 13 27 27 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47124 * 300.00530 * 1 2 3 29 29 H 1.08998 * 109.47317 * 60.00145 * 1 2 3 30 30 H 1.08990 * 109.47200 * 239.99419 * 2 1 3 31 31 H 1.09004 * 109.47018 * 119.99218 * 2 1 3 32 32 H 0.97001 * 120.00224 * 245.00210 * 6 3 2 33 33 H 1.09006 * 109.46787 * 60.00195 * 9 7 6 34 34 H 1.09005 * 109.47504 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.47409 * 300.00056 * 9 7 6 36 36 H 0.96994 * 120.00288 * 359.97438 * 12 10 7 37 37 H 1.09001 * 112.84977 * 25.33198 * 13 12 10 38 38 H 1.09003 * 113.61484 * 25.43689 * 14 13 12 39 39 H 1.09008 * 113.61446 * 156.33323 * 14 13 12 40 40 H 1.08996 * 113.69322 * 89.12557 * 15 14 13 41 41 H 1.09001 * 109.46916 * 32.49278 * 16 15 14 42 42 H 1.08998 * 109.46684 * 152.49252 * 16 15 14 43 43 H 0.97001 * 120.00266 * 359.97438 * 17 16 15 44 44 H 0.96996 * 120.00314 * 180.02562 * 21 20 18 45 45 H 1.08996 * 113.61504 * 270.88294 * 26 15 14 46 46 H 1.08994 * 113.61194 * 139.97385 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 1.2369 5 8 1.8386 2.3437 -1.2371 6 7 3.7843 1.5654 -0.0007 7 6 4.4661 0.9617 -1.1483 8 1 3.7783 0.2970 -1.6712 9 6 4.9338 2.0636 -2.1011 10 6 5.6576 0.1742 -0.6675 11 8 5.9125 0.1227 0.5171 12 7 6.4406 -0.4720 -1.5540 13 6 7.5992 -1.2371 -1.0866 14 6 8.9459 -0.5517 -1.3722 15 6 8.9400 -1.2862 -2.7263 16 6 10.3125 -1.8219 -3.1391 17 7 11.0441 -0.7816 -3.8664 18 6 12.3052 -1.0334 -4.3371 19 1 12.7603 -1.9989 -4.1725 20 6 12.9982 -0.0479 -5.0266 21 7 12.4434 1.1286 -5.2277 22 14 14.7188 -0.3911 -5.6681 23 1 15.1118 -1.7784 -5.3130 24 1 14.7369 -0.2345 -7.1447 25 1 15.6750 0.5666 -5.0569 26 6 8.0416 -2.3419 -2.0607 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8934 -0.5137 0.8901 32 1 4.2989 1.8764 0.7605 33 1 5.6216 2.7282 -1.5783 34 1 5.4415 1.6145 -2.9548 35 1 4.0720 2.6332 -2.4489 36 1 6.2370 -0.4305 -2.5014 37 1 7.4931 -1.5793 -0.0572 38 1 8.8739 0.5323 -1.4615 39 1 9.7479 -0.8702 -0.7062 40 1 8.4450 -0.7314 -3.5233 41 1 10.8741 -2.1064 -2.2493 42 1 10.1842 -2.6928 -3.7818 43 1 10.6353 0.0854 -4.0146 44 1 12.9275 1.8171 -5.7098 45 1 8.5967 -3.1489 -1.5825 46 1 7.2400 -2.7021 -2.7054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505498708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:22 Heat of formation + Delta-G solvation = -81.599458 kcal Electronic energy + Delta-G solvation = -26663.989352 eV Core-core repulsion = 22716.752630 eV Total energy + Delta-G solvation = -3947.236722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55429 -38.70836 -37.50679 -36.36771 -35.76874 -34.63488 -33.67986 -33.33943 -30.99255 -30.05426 -26.93012 -25.58320 -24.84143 -24.58584 -23.29929 -21.54233 -20.98226 -19.84121 -19.20622 -18.61057 -17.47465 -17.10509 -16.78255 -16.54279 -16.08000 -15.50451 -15.38454 -14.82688 -14.65357 -14.46978 -14.03920 -13.91245 -13.81648 -13.55025 -13.31223 -13.04966 -12.91874 -12.73809 -12.52429 -12.44087 -12.36273 -12.19814 -12.17908 -12.12389 -11.99455 -11.70268 -11.17320 -11.07166 -10.86555 -10.55320 -10.39365 -10.32232 -10.12190 -9.89551 -9.81345 -9.64832 -9.15586 -8.87494 -6.92444 -5.78058 -3.06306 -0.19879 2.15939 2.26984 2.87727 3.35541 3.41992 3.47617 3.49894 3.71248 4.03093 4.13430 4.30070 4.36855 4.55223 4.57685 4.61636 4.65532 4.75633 4.85783 5.03122 5.04440 5.06932 5.16387 5.38125 5.41407 5.53972 5.56267 5.63364 5.77528 5.86776 5.89991 5.93556 6.04795 6.15888 6.23486 6.36653 6.54190 6.54806 6.74173 6.88617 7.24191 7.69027 7.90872 8.41156 9.52316 10.11091 10.45317 11.44918 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.002008 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.308714 B =13939.934468 C =14434.206461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.613 3.387 4 O -0.953 6.953 5 O -0.950 6.950 6 N -1.101 6.101 7 C 0.135 3.865 8 H 0.107 0.893 9 C -0.171 4.171 10 C 0.510 3.490 11 O -0.530 6.530 12 N -0.703 5.703 13 C 0.114 3.886 14 C -0.138 4.138 15 C -0.113 4.113 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.427 0.573 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.404 0.596 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.095 0.905 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 -4.188 9.656 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.765 4.765 3 S 2.704 3.296 4 O -0.943 6.943 5 O -0.940 6.940 6 N -0.861 5.861 7 C 0.024 3.976 8 H 0.125 0.875 9 C -0.230 4.230 10 C 0.294 3.706 11 O -0.406 6.406 12 N -0.355 5.355 13 C 0.009 3.991 14 C -0.177 4.177 15 C -0.132 4.132 16 C 0.034 3.966 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.176 4.176 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.264 0.736 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.239 0.761 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.298 -3.579 10.339 27.562 hybrid contribution 1.290 -0.515 -0.651 1.534 sum -24.008 -4.094 9.688 26.211 Atomic orbital electron populations 1.21508 0.90243 1.05238 1.03584 1.30540 1.07504 1.26579 1.11842 1.05060 0.72749 0.77269 0.74517 1.93624 1.82772 1.72936 1.44996 1.93622 1.83159 1.71811 1.45384 1.55503 1.25842 1.76831 1.27915 1.20639 0.94196 0.95511 0.87281 0.87543 1.22320 1.03641 0.98506 0.98540 1.20613 0.84019 0.79324 0.86631 1.90713 1.72082 1.61443 1.16389 1.45668 1.28180 1.51281 1.10338 1.21991 0.85142 0.92918 0.99028 1.23454 0.96015 1.00540 0.97655 1.22817 0.97285 0.96609 0.96492 1.20639 0.89226 0.92162 0.94536 1.42350 1.16083 1.13156 1.65996 1.19284 0.91723 0.97973 1.28013 0.91188 1.24747 0.98731 0.96089 1.01570 1.69662 1.37687 1.04166 1.46713 0.86121 0.84467 0.77289 0.78341 1.20579 1.21889 1.21879 1.23308 0.99399 0.96895 0.97989 0.89884 0.90860 0.90799 0.85186 0.84641 0.73579 0.90963 0.90495 0.89470 0.76121 0.88274 0.91214 0.89082 0.89345 0.96232 0.96415 0.78339 0.93583 0.88639 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.92 37.16 0.37 -0.29 16 2 C -0.64 -3.02 6.67 37.16 0.25 -2.78 16 3 S 2.61 20.64 5.38 -107.50 -0.58 20.06 16 4 O -0.95 -10.84 18.08 -57.54 -1.04 -11.88 16 5 O -0.95 -9.81 17.14 -57.54 -0.99 -10.79 16 6 N -1.10 -8.77 5.15 -5.88 -0.03 -8.80 16 7 C 0.14 1.00 3.09 -69.09 -0.21 0.79 16 8 H 0.11 0.43 7.13 -51.92 -0.37 0.06 16 9 C -0.17 -1.30 9.41 37.16 0.35 -0.95 16 10 C 0.51 5.10 7.22 -10.99 -0.08 5.02 16 11 O -0.53 -7.15 15.61 5.55 0.09 -7.06 16 12 N -0.70 -6.42 5.16 -53.01 -0.27 -6.69 16 13 C 0.11 1.25 4.30 -67.12 -0.29 0.97 16 14 C -0.14 -1.89 7.45 -25.78 -0.19 -2.08 16 15 C -0.11 -1.61 3.65 -89.66 -0.33 -1.93 16 16 C 0.16 3.08 6.10 -4.04 -0.02 3.06 16 17 N -0.73 -18.13 5.60 -59.90 -0.34 -18.46 16 18 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C -0.14 -1.45 7.38 -25.91 -0.19 -1.64 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.13 0.37 7.43 -51.93 -0.39 -0.01 16 31 H 0.14 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.43 3.65 8.17 -34.47 -0.28 3.37 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 35 H 0.09 0.69 7.45 -51.93 -0.39 0.30 16 36 H 0.40 2.78 8.12 -40.82 -0.33 2.45 16 37 H 0.10 1.16 7.50 -51.93 -0.39 0.77 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.30 7.90 -51.92 -0.41 0.89 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 9.97 7.67 -40.82 -0.31 9.65 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -37.14 391.03 -9.60 -46.74 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.44 Total: 8.21 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.60 Total: -7.17 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.09 Total: -61.29 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.94 Total: -29.74 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 20.64 SS G_CDS: -0.58 Total: 20.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.14 -9.60 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505498708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.857 kcal (2) G-P(sol) polarization free energy of solvation -37.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds