Wall clock time and date at job start Tue Mar 31 2020 19:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00056 * 2 1 4 4 S 1.65596 * 119.99937 * 180.02562 * 2 1 3 5 5 O 1.42100 * 104.28001 * 333.92947 * 4 2 1 6 6 O 1.42098 * 104.27637 * 206.07159 * 4 2 1 7 7 C 1.81399 * 104.44987 * 90.00016 * 4 2 1 8 8 C 1.53004 * 109.47047 * 179.97438 * 7 4 2 9 9 C 1.50707 * 109.47187 * 180.02562 * 8 7 4 10 10 O 1.21285 * 119.99567 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00124 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47196 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.63820 * 56.69151 * 13 12 11 15 15 C 1.55154 * 110.71866 * 180.02562 * 13 12 11 16 16 C 1.54908 * 101.58039 * 153.86876 * 15 13 12 17 17 N 1.47424 * 104.83135 * 322.98767 * 16 15 13 18 18 C 1.36939 * 125.64897 * 204.16934 * 17 16 15 19 19 H 1.08000 * 120.00316 * 161.47543 * 18 17 16 20 20 C 1.38812 * 119.99624 * 341.47140 * 18 17 16 21 21 N 1.31619 * 119.99593 * 157.62169 * 20 18 17 22 22 Si 1.86800 * 120.00239 * 337.61870 * 20 18 17 23 23 H 1.48502 * 109.46917 * 84.53800 * 22 20 18 24 24 H 1.48504 * 109.47069 * 204.53734 * 22 20 18 25 25 H 1.48501 * 109.47210 * 324.53796 * 22 20 18 26 26 C 1.47018 * 108.70415 * 24.13111 * 17 16 15 27 27 H 1.08999 * 109.46951 * 270.00354 * 1 2 3 28 28 H 1.09005 * 109.46808 * 30.00144 * 1 2 3 29 29 H 1.08994 * 109.47048 * 149.99427 * 1 2 3 30 30 H 1.09002 * 109.47507 * 270.00183 * 3 2 1 31 31 H 1.08999 * 109.47530 * 29.99936 * 3 2 1 32 32 H 1.08995 * 109.47120 * 150.00090 * 3 2 1 33 33 H 1.08996 * 109.47584 * 60.00047 * 7 4 2 34 34 H 1.09003 * 109.47204 * 300.00069 * 7 4 2 35 35 H 1.08998 * 109.47414 * 299.99676 * 8 7 4 36 36 H 1.08998 * 109.47305 * 60.00233 * 8 7 4 37 37 H 0.97007 * 119.99909 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46823 * 300.00125 * 12 11 9 39 39 H 1.08998 * 109.46656 * 59.99922 * 12 11 9 40 40 H 1.08999 * 111.00139 * 271.93860 * 15 13 12 41 41 H 1.08993 * 111.00506 * 35.79085 * 15 13 12 42 42 H 1.09001 * 110.36508 * 204.15632 * 16 15 13 43 43 H 1.08994 * 110.46208 * 81.87435 * 16 15 13 44 44 H 0.97001 * 119.99918 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.88261 * 239.52621 * 26 17 16 46 46 H 1.08998 * 110.01383 * 118.42576 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3970 -2.3564 0.6041 6 8 3.5394 -1.1194 0.6047 7 6 2.5193 -1.8253 -1.7574 8 6 3.2819 -3.1449 -1.8919 9 6 3.4705 -3.4697 -3.3514 10 8 3.0372 -2.7197 -4.2004 11 7 4.1198 -4.5939 -3.7132 12 6 4.3026 -4.9098 -5.1321 13 6 5.0654 -6.2294 -5.2665 14 1 4.5434 -7.0300 -4.7424 15 6 5.2759 -6.5919 -6.7604 16 6 6.5530 -7.4659 -6.6913 17 7 7.3836 -6.8386 -5.6473 18 6 8.7449 -6.9426 -5.5408 19 1 9.2961 -6.2295 -4.9457 20 6 9.4163 -7.9647 -6.1976 21 7 10.6968 -7.8390 -6.4748 22 14 8.5025 -9.5183 -6.6880 23 1 7.8260 -9.3038 -7.9925 24 1 9.4659 -10.6420 -6.8089 25 1 7.4891 -9.8444 -5.6526 26 6 6.5085 -6.0820 -4.7399 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 2.3792 1.5834 -1.0277 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0866 -1.0278 -2.2372 34 1 1.5451 -1.9177 -2.2376 35 1 4.2562 -3.0521 -1.4120 36 1 2.7150 -3.9428 -1.4122 37 1 4.4654 -5.1942 -3.0342 38 1 3.3285 -5.0022 -5.6121 39 1 4.8699 -4.1121 -5.6117 40 1 4.4318 -7.1634 -7.1464 41 1 5.4466 -5.6973 -7.3592 42 1 7.0737 -7.4531 -7.6488 43 1 6.3002 -8.4885 -6.4113 44 1 11.1661 -8.5534 -6.9334 45 1 6.7968 -5.0308 -4.7378 46 1 6.5779 -6.4874 -3.7305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:38 Heat of formation + Delta-G solvation = -78.343812 kcal Electronic energy + Delta-G solvation = -26515.208642 eV Core-core repulsion = 22568.113095 eV Total energy + Delta-G solvation = -3947.095547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.98055 -38.09127 -37.57083 -36.70056 -36.26589 -34.92837 -33.59098 -32.55512 -30.49803 -28.77128 -28.58169 -26.58571 -25.35210 -24.71143 -23.10050 -21.24150 -20.39466 -19.79733 -19.31798 -18.31778 -17.41515 -16.91524 -16.87541 -16.55948 -16.10900 -15.97012 -15.44896 -15.08628 -14.92600 -14.78564 -14.17781 -13.83520 -13.60646 -13.52975 -13.26909 -13.10526 -12.96838 -12.83345 -12.75809 -12.48212 -12.32004 -12.19152 -12.08239 -11.99049 -11.90181 -11.62572 -11.35775 -11.25279 -11.05475 -10.65879 -10.59122 -10.19806 -10.03998 -9.95320 -9.55396 -9.46093 -9.16914 -8.71029 -7.07573 -5.96895 -3.27602 -0.23000 2.13738 2.42080 2.97416 3.32178 3.41968 3.45606 3.47757 3.71384 3.92140 4.22600 4.33321 4.51490 4.52418 4.77051 4.81750 4.88057 4.91911 4.96201 5.03808 5.05231 5.10073 5.17703 5.28215 5.32915 5.35164 5.43718 5.44939 5.56136 5.73493 5.79398 5.96563 5.96664 6.05903 6.22465 6.28691 6.45413 6.57484 6.67569 6.71663 7.33056 7.68541 8.02077 8.28966 8.80927 9.66382 10.14871 11.19201 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.027005 B = 0.002013 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.596522 B =13903.426769 C =14292.872595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.008 6.008 3 C 0.080 3.920 4 S 2.610 3.390 5 O -0.951 6.951 6 O -0.950 6.950 7 C -0.611 4.611 8 C -0.137 4.137 9 C 0.521 3.479 10 O -0.540 6.540 11 N -0.724 5.724 12 C 0.132 3.868 13 C -0.117 4.117 14 H 0.081 0.919 15 C -0.121 4.121 16 C 0.110 3.890 17 N -0.609 5.609 18 C -0.244 4.244 19 H 0.092 0.908 20 C 0.021 3.979 21 N -0.908 5.908 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.278 1.278 26 C 0.140 3.860 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.263 0.737 45 H 0.034 0.966 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.939 15.304 11.499 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.847 5.847 3 C -0.065 4.065 4 S 2.703 3.297 5 O -0.941 6.941 6 O -0.940 6.940 7 C -0.740 4.740 8 C -0.179 4.179 9 C 0.305 3.695 10 O -0.418 6.418 11 N -0.375 5.375 12 C 0.009 3.991 13 C -0.137 4.137 14 H 0.099 0.901 15 C -0.160 4.160 16 C -0.015 4.015 17 N -0.336 5.336 18 C -0.371 4.371 19 H 0.109 0.891 20 C -0.178 4.178 21 N -0.551 5.551 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.204 1.204 26 C 0.014 3.986 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -22.734 15.337 11.596 29.775 hybrid contribution -0.327 -1.112 -0.732 1.370 sum -23.061 14.225 10.864 29.192 Atomic orbital electron populations 1.21502 0.78064 1.03145 1.02535 1.57320 1.15347 1.21870 1.90173 1.21651 0.97616 0.84988 1.02242 1.05131 0.73975 0.73212 0.77374 1.93609 1.64590 1.62483 1.73452 1.93604 1.44073 1.82827 1.73494 1.30452 1.10723 1.06133 1.26725 1.21378 1.03053 0.96443 0.97021 1.20134 0.77908 0.81085 0.90354 1.90703 1.49561 1.48935 1.52566 1.46043 1.57810 1.24149 1.09515 1.21449 1.00105 0.96939 0.80657 1.22485 0.96898 0.95915 0.98382 0.90062 1.22713 0.98304 1.00537 0.94443 1.21966 0.90873 0.94806 0.93875 1.44767 1.03108 1.58934 1.26774 1.18635 0.78515 1.09898 1.30003 0.89084 1.25009 0.95190 0.98343 0.99209 1.69848 1.09269 1.33316 1.42712 0.86950 0.78466 0.84723 0.78351 1.21211 1.23031 1.20352 1.21396 0.87639 0.96128 0.93430 0.92143 0.90849 0.90944 0.92501 0.90527 0.89560 0.84159 0.84337 0.87002 0.87218 0.76068 0.91404 0.90894 0.91345 0.90784 0.92180 0.95670 0.92685 0.94757 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.20 59.85 0.61 1.04 16 2 N -1.01 -6.32 3.52 -129.21 -0.45 -6.78 16 3 C 0.08 0.39 10.64 59.85 0.64 1.03 16 4 S 2.61 21.16 5.38 -107.50 -0.58 20.58 16 5 O -0.95 -10.24 17.09 -57.54 -0.98 -11.23 16 6 O -0.95 -10.49 16.57 -57.54 -0.95 -11.44 16 7 C -0.61 -4.38 5.47 37.16 0.20 -4.18 16 8 C -0.14 -1.10 5.71 -27.88 -0.16 -1.25 16 9 C 0.52 5.93 7.83 -10.99 -0.09 5.85 16 10 O -0.54 -8.00 15.98 5.55 0.09 -7.91 16 11 N -0.72 -7.87 5.40 -60.29 -0.33 -8.20 16 12 C 0.13 1.66 4.99 -4.04 -0.02 1.64 16 13 C -0.12 -1.68 3.02 -88.78 -0.27 -1.94 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.12 -1.89 6.53 -24.58 -0.16 -2.05 16 16 C 0.11 2.32 4.70 -2.53 -0.01 2.30 16 17 N -0.61 -14.42 3.21 -170.08 -0.55 -14.96 16 18 C -0.24 -6.87 10.57 -15.06 -0.16 -7.03 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 21 N -0.91 -27.97 13.97 55.49 0.78 -27.19 16 22 Si 0.88 22.44 24.27 -169.99 -4.13 18.32 16 23 H -0.29 -6.93 6.49 56.52 0.37 -6.57 16 24 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 25 H -0.28 -6.92 6.66 56.52 0.38 -6.54 16 26 C 0.14 2.57 6.52 -3.07 -0.02 2.55 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 29 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 32 H 0.09 0.50 6.91 -51.93 -0.36 0.14 16 33 H 0.14 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.14 0.88 8.10 -51.92 -0.42 0.46 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 3.56 8.33 -40.82 -0.34 3.22 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 42 H 0.06 1.37 6.64 -51.93 -0.34 1.02 16 43 H 0.03 0.55 5.57 -51.93 -0.29 0.27 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.03 0.64 7.76 -51.93 -0.40 0.24 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -38.44 380.19 -8.56 -47.00 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.66 Total: -2.38 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 0.47 Total: -1.53 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.55 Total: -57.14 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.85 Total: -30.58 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.13 Total: 18.32 kcal Atomic # 16 Polarization: 21.16 SS G_CDS: -0.58 Total: 20.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.44 -8.56 -47.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.346 kcal (2) G-P(sol) polarization free energy of solvation -38.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds